Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02225 and DDA3937_RS02230 are separated by 46 nucleotides DDA3937_RS02230 and DDA3937_RS02235 are separated by 9 nucleotides DDA3937_RS02235 and DDA3937_RS02240 are separated by 101 nucleotides
DDA3937_RS02225: DDA3937_RS02225 - ABC transporter substrate-binding protein, at 492,891 to 494,423
_RS02225
DDA3937_RS02230: DDA3937_RS02230 - ABC transporter permease, at 494,470 to 495,387
_RS02230
DDA3937_RS02235: DDA3937_RS02235 - ABC transporter permease, at 495,397 to 496,323
_RS02235
DDA3937_RS02240: DDA3937_RS02240 - ATP-binding cassette domain-containing protein, at 496,425 to 497,399
_RS02240
Position (kb) 495
496
497 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 494.421 kb on + strand at 494.421 kb on + strand at 494.422 kb on - strand at 494.457 kb on - strand at 494.469 kb on + strand at 494.470 kb on - strand at 494.479 kb on + strand at 494.480 kb on - strand at 494.495 kb on + strand at 494.521 kb on - strand at 494.842 kb on - strand, within DDA3937_RS02230 at 495.014 kb on - strand, within DDA3937_RS02230 at 495.014 kb on - strand, within DDA3937_RS02230 at 495.014 kb on - strand, within DDA3937_RS02230 at 495.077 kb on - strand, within DDA3937_RS02230 at 495.114 kb on + strand, within DDA3937_RS02230 at 495.115 kb on - strand, within DDA3937_RS02230 at 495.115 kb on - strand, within DDA3937_RS02230 at 495.319 kb on + strand at 495.320 kb on - strand at 495.385 kb on + strand at 495.385 kb on + strand at 495.386 kb on - strand at 495.546 kb on + strand, within DDA3937_RS02235 at 495.546 kb on + strand, within DDA3937_RS02235 at 495.546 kb on + strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.592 kb on + strand, within DDA3937_RS02235 at 495.689 kb on - strand, within DDA3937_RS02235 at 495.793 kb on + strand, within DDA3937_RS02235 at 495.826 kb on + strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.202 kb on - strand, within DDA3937_RS02235 at 496.202 kb on - strand, within DDA3937_RS02235 at 496.202 kb on - strand, within DDA3937_RS02235 at 496.331 kb on - strand at 496.331 kb on - strand at 496.349 kb on + strand at 496.349 kb on + strand at 496.350 kb on - strand at 496.350 kb on - strand at 496.350 kb on - strand at 496.350 kb on - strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.371 kb on - strand at 496.815 kb on + strand, within DDA3937_RS02240 at 496.815 kb on + strand, within DDA3937_RS02240 at 496.815 kb on + strand, within DDA3937_RS02240 at 497.014 kb on + strand, within DDA3937_RS02240 at 497.014 kb on + strand, within DDA3937_RS02240 at 497.015 kb on - strand, within DDA3937_RS02240 at 497.015 kb on - strand, within DDA3937_RS02240 at 497.015 kb on - strand, within DDA3937_RS02240 at 497.015 kb on - strand, within DDA3937_RS02240 at 497.100 kb on + strand, within DDA3937_RS02240 at 497.100 kb on + strand, within DDA3937_RS02240 at 497.100 kb on + strand, within DDA3937_RS02240 at 497.101 kb on - strand, within DDA3937_RS02240 at 497.101 kb on - strand, within DDA3937_RS02240 at 497.164 kb on - strand, within DDA3937_RS02240 at 497.164 kb on - strand, within DDA3937_RS02240 at 497.164 kb on - strand, within DDA3937_RS02240 at 497.164 kb on - strand, within DDA3937_RS02240
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 494,421 + +1.4 494,421 + -0.2 494,422 - +0.2 494,457 - -0.2 494,469 + -0.5 494,470 - +0.7 494,479 + +0.3 494,480 - -0.6 494,495 + -0.1 494,521 - +0.1 494,842 - DDA3937_RS02230 0.41 +2.7 495,014 - DDA3937_RS02230 0.59 +0.7 495,014 - DDA3937_RS02230 0.59 +3.7 495,014 - DDA3937_RS02230 0.59 -1.1 495,077 - DDA3937_RS02230 0.66 -0.1 495,114 + DDA3937_RS02230 0.70 -0.3 495,115 - DDA3937_RS02230 0.70 +7.3 495,115 - DDA3937_RS02230 0.70 +1.0 495,319 + +3.0 495,320 - +0.7 495,385 + +0.4 495,385 + -1.1 495,386 - -1.0 495,546 + DDA3937_RS02235 0.16 -1.2 495,546 + DDA3937_RS02235 0.16 -0.9 495,546 + DDA3937_RS02235 0.16 -0.6 495,547 - DDA3937_RS02235 0.16 -0.2 495,547 - DDA3937_RS02235 0.16 -0.0 495,547 - DDA3937_RS02235 0.16 -2.3 495,547 - DDA3937_RS02235 0.16 +0.8 495,547 - DDA3937_RS02235 0.16 -0.3 495,547 - -0.6 495,547 - DDA3937_RS02235 0.16 +1.0 495,547 - DDA3937_RS02235 0.16 -2.0 495,549 - DDA3937_RS02235 0.16 +1.4 495,549 - DDA3937_RS02235 0.16 -2.1 495,549 - DDA3937_RS02235 0.16 +2.2 495,549 - DDA3937_RS02235 0.16 +1.6 495,549 - DDA3937_RS02235 0.16 -0.6 495,549 - DDA3937_RS02235 0.16 +0.1 495,592 + DDA3937_RS02235 0.21 +0.1 495,689 - DDA3937_RS02235 0.31 -1.3 495,793 + DDA3937_RS02235 0.43 -1.8 495,826 + DDA3937_RS02235 0.46 -1.4 495,827 - DDA3937_RS02235 0.46 -0.4 495,827 - DDA3937_RS02235 0.46 +0.1 495,827 - DDA3937_RS02235 0.46 -0.5 495,827 - DDA3937_RS02235 0.46 +0.3 495,827 - DDA3937_RS02235 0.46 -0.3 495,827 - DDA3937_RS02235 0.46 -2.4 496,201 + DDA3937_RS02235 0.87 +0.8 496,201 + DDA3937_RS02235 0.87 -0.6 496,201 + DDA3937_RS02235 0.87 -1.3 496,201 + DDA3937_RS02235 0.87 +0.3 496,201 + DDA3937_RS02235 0.87 +2.0 496,201 + DDA3937_RS02235 0.87 +0.4 496,201 + +1.1 496,201 + DDA3937_RS02235 0.87 +0.1 496,201 + DDA3937_RS02235 0.87 +1.6 496,201 + DDA3937_RS02235 0.87 +0.1 496,202 - DDA3937_RS02235 0.87 -0.3 496,202 - DDA3937_RS02235 0.87 -0.2 496,202 - DDA3937_RS02235 0.87 +0.6 496,331 - +0.5 496,331 - -1.9 496,349 + +0.9 496,349 + -0.6 496,350 - -0.9 496,350 - +0.1 496,350 - -1.6 496,350 - -2.5 496,355 + +0.5 496,355 + -2.4 496,355 + -0.8 496,355 + +0.9 496,355 + -1.2 496,355 + +0.0 496,355 + +0.2 496,356 - -0.6 496,356 - -1.6 496,356 - +1.9 496,356 - -1.8 496,356 - -1.0 496,356 - -0.2 496,356 - -3.7 496,356 - -0.1 496,371 - +0.4 496,815 + DDA3937_RS02240 0.40 -0.6 496,815 + DDA3937_RS02240 0.40 -2.4 496,815 + DDA3937_RS02240 0.40 -0.8 497,014 + DDA3937_RS02240 0.60 +0.2 497,014 + DDA3937_RS02240 0.60 -0.5 497,015 - DDA3937_RS02240 0.61 -0.6 497,015 - DDA3937_RS02240 0.61 -0.5 497,015 - DDA3937_RS02240 0.61 -1.1 497,015 - DDA3937_RS02240 0.61 -1.3 497,100 + DDA3937_RS02240 0.69 -0.6 497,100 + DDA3937_RS02240 0.69 +1.4 497,100 + DDA3937_RS02240 0.69 +0.4 497,101 - DDA3937_RS02240 0.69 +0.2 497,101 - DDA3937_RS02240 0.69 -0.8 497,164 - DDA3937_RS02240 0.76 -0.8 497,164 - DDA3937_RS02240 0.76 -2.4 497,164 - DDA3937_RS02240 0.76 +0.1 497,164 - DDA3937_RS02240 0.76 -3.0
Or see this region's nucleotide sequence