Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02200

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02195 and DDA3937_RS02200 are separated by 10 nucleotidesDDA3937_RS02200 and DDA3937_RS02205 are separated by 102 nucleotidesDDA3937_RS02205 and DDA3937_RS02210 are separated by 71 nucleotides DDA3937_RS02195: DDA3937_RS02195 - FGGY-family carbohydrate kinase, at 487,113 to 488,624 _RS02195 DDA3937_RS02200: DDA3937_RS02200 - SDR family oxidoreductase, at 488,635 to 489,432 _RS02200 DDA3937_RS02205: DDA3937_RS02205 - type-1Aa cytolytic delta-endotoxin, at 489,535 to 490,194 _RS02205 DDA3937_RS02210: DDA3937_RS02210 - type-1Ba cytolytic delta-endotoxin, at 490,266 to 490,877 _RS02210 Position (kb) 488 489 490Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 487.682 kb on + strand, within DDA3937_RS02195at 487.683 kb on - strand, within DDA3937_RS02195at 487.899 kb on + strand, within DDA3937_RS02195at 487.899 kb on + strand, within DDA3937_RS02195at 487.900 kb on - strand, within DDA3937_RS02195at 487.900 kb on - strand, within DDA3937_RS02195at 487.900 kb on - strand, within DDA3937_RS02195at 488.002 kb on - strand, within DDA3937_RS02195at 488.053 kb on + strand, within DDA3937_RS02195at 488.054 kb on - strand, within DDA3937_RS02195at 488.054 kb on - strand, within DDA3937_RS02195at 488.054 kb on - strand, within DDA3937_RS02195at 488.145 kb on + strand, within DDA3937_RS02195at 488.145 kb on + strand, within DDA3937_RS02195at 488.146 kb on - strand, within DDA3937_RS02195at 488.146 kb on - strand, within DDA3937_RS02195at 488.146 kb on - strand, within DDA3937_RS02195at 488.146 kb on - strand, within DDA3937_RS02195at 488.519 kb on + strandat 488.519 kb on + strandat 488.651 kb on - strandat 488.655 kb on + strandat 488.655 kb on + strandat 488.655 kb on + strandat 488.655 kb on + strandat 488.655 kb on + strandat 488.783 kb on + strand, within DDA3937_RS02200at 488.783 kb on + strand, within DDA3937_RS02200at 488.783 kb on + strand, within DDA3937_RS02200at 488.783 kb on + strand, within DDA3937_RS02200at 488.784 kb on - strand, within DDA3937_RS02200at 488.784 kb on - strand, within DDA3937_RS02200at 488.784 kb on - strand, within DDA3937_RS02200at 488.847 kb on - strand, within DDA3937_RS02200at 488.847 kb on - strand, within DDA3937_RS02200at 488.857 kb on + strand, within DDA3937_RS02200at 488.858 kb on - strand, within DDA3937_RS02200at 488.858 kb on - strand, within DDA3937_RS02200at 488.858 kb on - strand, within DDA3937_RS02200at 488.929 kb on + strand, within DDA3937_RS02200at 488.930 kb on - strand, within DDA3937_RS02200at 488.979 kb on + strand, within DDA3937_RS02200at 488.990 kb on + strand, within DDA3937_RS02200at 488.991 kb on - strand, within DDA3937_RS02200at 489.019 kb on + strand, within DDA3937_RS02200at 489.020 kb on - strand, within DDA3937_RS02200at 489.020 kb on - strand, within DDA3937_RS02200at 489.020 kb on - strandat 489.051 kb on + strand, within DDA3937_RS02200at 489.051 kb on + strand, within DDA3937_RS02200at 489.052 kb on - strand, within DDA3937_RS02200at 489.054 kb on + strand, within DDA3937_RS02200at 489.055 kb on - strand, within DDA3937_RS02200at 489.055 kb on - strand, within DDA3937_RS02200at 489.084 kb on + strand, within DDA3937_RS02200at 489.084 kb on + strand, within DDA3937_RS02200at 489.085 kb on - strand, within DDA3937_RS02200at 489.085 kb on - strand, within DDA3937_RS02200at 489.085 kb on - strand, within DDA3937_RS02200at 489.085 kb on - strand, within DDA3937_RS02200at 489.088 kb on + strand, within DDA3937_RS02200at 489.088 kb on + strand, within DDA3937_RS02200at 489.088 kb on + strand, within DDA3937_RS02200at 489.088 kb on + strand, within DDA3937_RS02200at 489.088 kb on + strand, within DDA3937_RS02200at 489.088 kb on + strand, within DDA3937_RS02200at 489.089 kb on - strandat 489.089 kb on - strand, within DDA3937_RS02200at 489.089 kb on - strand, within DDA3937_RS02200at 489.090 kb on + strand, within DDA3937_RS02200at 489.091 kb on - strand, within DDA3937_RS02200at 489.220 kb on + strand, within DDA3937_RS02200at 489.300 kb on - strand, within DDA3937_RS02200at 489.382 kb on + strandat 489.383 kb on - strandat 489.383 kb on - strandat 489.383 kb on - strandat 489.402 kb on + strandat 489.403 kb on - strandat 489.544 kb on + strandat 489.545 kb on - strandat 489.584 kb on + strandat 489.584 kb on + strandat 489.584 kb on + strandat 489.584 kb on + strandat 489.584 kb on + strandat 489.585 kb on - strandat 489.585 kb on - strandat 489.587 kb on + strandat 489.587 kb on + strandat 489.587 kb on + strandat 489.588 kb on - strandat 489.588 kb on - strandat 489.588 kb on - strandat 489.588 kb on - strandat 489.588 kb on - strandat 489.588 kb on - strandat 489.588 kb on - strandat 489.588 kb on - strandat 489.588 kb on - strandat 489.610 kb on - strand, within DDA3937_RS02205at 489.700 kb on + strand, within DDA3937_RS02205at 489.701 kb on - strand, within DDA3937_RS02205at 489.701 kb on - strand, within DDA3937_RS02205at 489.701 kb on - strand, within DDA3937_RS02205at 489.705 kb on + strand, within DDA3937_RS02205at 489.713 kb on + strand, within DDA3937_RS02205at 489.713 kb on + strand, within DDA3937_RS02205at 489.713 kb on + strand, within DDA3937_RS02205at 489.714 kb on - strand, within DDA3937_RS02205at 489.714 kb on - strand, within DDA3937_RS02205at 489.714 kb on - strand, within DDA3937_RS02205at 489.720 kb on + strand, within DDA3937_RS02205at 489.721 kb on - strandat 489.795 kb on + strand, within DDA3937_RS02205at 489.796 kb on - strand, within DDA3937_RS02205at 489.796 kb on - strand, within DDA3937_RS02205at 489.858 kb on + strand, within DDA3937_RS02205at 489.859 kb on - strand, within DDA3937_RS02205at 489.859 kb on - strand, within DDA3937_RS02205at 489.929 kb on - strand, within DDA3937_RS02205at 489.958 kb on - strand, within DDA3937_RS02205at 489.958 kb on - strand, within DDA3937_RS02205at 489.958 kb on - strand, within DDA3937_RS02205at 490.038 kb on + strand, within DDA3937_RS02205at 490.038 kb on + strand, within DDA3937_RS02205at 490.039 kb on - strand, within DDA3937_RS02205at 490.040 kb on + strand, within DDA3937_RS02205at 490.040 kb on + strand, within DDA3937_RS02205at 490.040 kb on + strand, within DDA3937_RS02205at 490.174 kb on + strandat 490.174 kb on + strandat 490.174 kb on + strandat 490.174 kb on + strandat 490.175 kb on - strandat 490.190 kb on + strandat 490.191 kb on - strandat 490.191 kb on - strandat 490.191 kb on - strandat 490.191 kb on - strandat 490.191 kb on - strandat 490.197 kb on + strandat 490.253 kb on + strandat 490.356 kb on + strand, within DDA3937_RS02210at 490.357 kb on - strand, within DDA3937_RS02210at 490.391 kb on + strand, within DDA3937_RS02210

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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487,682 + DDA3937_RS02195 0.38 -1.0
487,683 - DDA3937_RS02195 0.38 -0.2
487,899 + DDA3937_RS02195 0.52 -1.4
487,899 + DDA3937_RS02195 0.52 -0.2
487,900 - DDA3937_RS02195 0.52 -1.3
487,900 - DDA3937_RS02195 0.52 +0.1
487,900 - DDA3937_RS02195 0.52 -0.7
488,002 - DDA3937_RS02195 0.59 -0.6
488,053 + DDA3937_RS02195 0.62 -0.2
488,054 - DDA3937_RS02195 0.62 -1.2
488,054 - DDA3937_RS02195 0.62 +1.7
488,054 - DDA3937_RS02195 0.62 -0.4
488,145 + DDA3937_RS02195 0.68 +0.4
488,145 + DDA3937_RS02195 0.68 -0.6
488,146 - DDA3937_RS02195 0.68 -0.8
488,146 - DDA3937_RS02195 0.68 +1.1
488,146 - DDA3937_RS02195 0.68 -0.9
488,146 - DDA3937_RS02195 0.68 -0.2
488,519 + -0.2
488,519 + -0.2
488,651 - +1.4
488,655 + +0.4
488,655 + +0.1
488,655 + -1.6
488,655 + -0.7
488,655 + -0.5
488,783 + DDA3937_RS02200 0.19 +0.6
488,783 + DDA3937_RS02200 0.19 -0.4
488,783 + DDA3937_RS02200 0.19 -2.2
488,783 + DDA3937_RS02200 0.19 -0.6
488,784 - DDA3937_RS02200 0.19 -1.4
488,784 - DDA3937_RS02200 0.19 -2.3
488,784 - DDA3937_RS02200 0.19 -1.1
488,847 - DDA3937_RS02200 0.27 +0.4
488,847 - DDA3937_RS02200 0.27 -1.7
488,857 + DDA3937_RS02200 0.28 +0.2
488,858 - DDA3937_RS02200 0.28 -1.5
488,858 - DDA3937_RS02200 0.28 +0.1
488,858 - DDA3937_RS02200 0.28 +2.4
488,929 + DDA3937_RS02200 0.37 -0.7
488,930 - DDA3937_RS02200 0.37 -0.4
488,979 + DDA3937_RS02200 0.43 +0.1
488,990 + DDA3937_RS02200 0.44 -1.5
488,991 - DDA3937_RS02200 0.45 -1.1
489,019 + DDA3937_RS02200 0.48 -0.5
489,020 - DDA3937_RS02200 0.48 -0.6
489,020 - DDA3937_RS02200 0.48 -0.5
489,020 - +0.4
489,051 + DDA3937_RS02200 0.52 -1.4
489,051 + DDA3937_RS02200 0.52 -0.6
489,052 - DDA3937_RS02200 0.52 -0.9
489,054 + DDA3937_RS02200 0.53 +0.1
489,055 - DDA3937_RS02200 0.53 -0.4
489,055 - DDA3937_RS02200 0.53 +0.6
489,084 + DDA3937_RS02200 0.56 +0.5
489,084 + DDA3937_RS02200 0.56 +2.5
489,085 - DDA3937_RS02200 0.56 -0.1
489,085 - DDA3937_RS02200 0.56 +0.3
489,085 - DDA3937_RS02200 0.56 -1.0
489,085 - DDA3937_RS02200 0.56 -0.6
489,088 + DDA3937_RS02200 0.57 -0.1
489,088 + DDA3937_RS02200 0.57 +0.9
489,088 + DDA3937_RS02200 0.57 -1.5
489,088 + DDA3937_RS02200 0.57 -1.1
489,088 + DDA3937_RS02200 0.57 -0.9
489,088 + DDA3937_RS02200 0.57 +1.1
489,089 - +1.4
489,089 - DDA3937_RS02200 0.57 -1.1
489,089 - DDA3937_RS02200 0.57 +2.3
489,090 + DDA3937_RS02200 0.57 -0.1
489,091 - DDA3937_RS02200 0.57 -0.4
489,220 + DDA3937_RS02200 0.73 +0.7
489,300 - DDA3937_RS02200 0.83 +0.1
489,382 + -1.4
489,383 - -0.2
489,383 - +2.0
489,383 - -0.0
489,402 + +0.2
489,403 - +0.6
489,544 + -1.6
489,545 - +0.7
489,584 + +0.2
489,584 + -1.4
489,584 + -0.2
489,584 + +0.3
489,584 + -2.3
489,585 - +0.0
489,585 - -2.0
489,587 + +0.6
489,587 + +0.3
489,587 + -1.2
489,588 - -1.4
489,588 - -2.1
489,588 - -1.3
489,588 - -2.1
489,588 - -1.4
489,588 - -2.1
489,588 - +0.7
489,588 - -0.2
489,588 - +1.2
489,610 - DDA3937_RS02205 0.11 +0.8
489,700 + DDA3937_RS02205 0.25 -1.8
489,701 - DDA3937_RS02205 0.25 +0.2
489,701 - DDA3937_RS02205 0.25 -1.6
489,701 - DDA3937_RS02205 0.25 +0.4
489,705 + DDA3937_RS02205 0.26 +0.3
489,713 + DDA3937_RS02205 0.27 -0.2
489,713 + DDA3937_RS02205 0.27 +0.2
489,713 + DDA3937_RS02205 0.27 -0.2
489,714 - DDA3937_RS02205 0.27 -1.3
489,714 - DDA3937_RS02205 0.27 +0.9
489,714 - DDA3937_RS02205 0.27 +1.7
489,720 + DDA3937_RS02205 0.28 -0.4
489,721 - +4.1
489,795 + DDA3937_RS02205 0.39 -1.0
489,796 - DDA3937_RS02205 0.40 +2.1
489,796 - DDA3937_RS02205 0.40 +0.6
489,858 + DDA3937_RS02205 0.49 +0.3
489,859 - DDA3937_RS02205 0.49 -1.8
489,859 - DDA3937_RS02205 0.49 -0.4
489,929 - DDA3937_RS02205 0.60 -0.0
489,958 - DDA3937_RS02205 0.64 -0.4
489,958 - DDA3937_RS02205 0.64 -0.2
489,958 - DDA3937_RS02205 0.64 +2.1
490,038 + DDA3937_RS02205 0.76 -0.1
490,038 + DDA3937_RS02205 0.76 +0.6
490,039 - DDA3937_RS02205 0.76 -0.2
490,040 + DDA3937_RS02205 0.77 -1.1
490,040 + DDA3937_RS02205 0.77 -0.7
490,040 + DDA3937_RS02205 0.77 -1.1
490,174 + -0.3
490,174 + +0.1
490,174 + +0.2
490,174 + +0.8
490,175 - -0.8
490,190 + -0.2
490,191 - -0.8
490,191 - -1.4
490,191 - -0.2
490,191 - -0.1
490,191 - +0.3
490,197 + +1.9
490,253 + -2.2
490,356 + DDA3937_RS02210 0.15 -2.5
490,357 - DDA3937_RS02210 0.15 -1.8
490,391 + DDA3937_RS02210 0.20 -1.8

Or see this region's nucleotide sequence