Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02175 and DDA3937_RS02180 are separated by 43 nucleotides DDA3937_RS02180 and DDA3937_RS02185 are separated by 50 nucleotides DDA3937_RS02185 and DDA3937_RS02190 are separated by 16 nucleotides
DDA3937_RS02175: DDA3937_RS02175 - D-ribose ABC transporter substrate-binding protein, at 482,815 to 483,750
_RS02175
DDA3937_RS02180: DDA3937_RS02180 - DUF2291 domain-containing protein, at 483,794 to 484,426
_RS02180
DDA3937_RS02185: DDA3937_RS02185 - sugar ABC transporter ATP-binding protein, at 484,477 to 486,036
_RS02185
DDA3937_RS02190: DDA3937_RS02190 - ABC transporter permease, at 486,053 to 487,120
_RS02190
Position (kb) 484
485
486
487 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 483.643 kb on + strand, within DDA3937_RS02175 at 483.643 kb on + strand, within DDA3937_RS02175 at 483.643 kb on + strand, within DDA3937_RS02175 at 483.643 kb on + strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.703 kb on - strand at 483.703 kb on - strand at 483.703 kb on - strand at 483.793 kb on + strand at 483.793 kb on + strand at 483.793 kb on + strand at 483.793 kb on + strand at 483.793 kb on + strand at 483.794 kb on - strand at 483.794 kb on - strand at 483.794 kb on - strand at 483.907 kb on + strand, within DDA3937_RS02180 at 484.078 kb on - strand, within DDA3937_RS02180 at 484.167 kb on + strand, within DDA3937_RS02180 at 484.167 kb on + strand, within DDA3937_RS02180 at 484.167 kb on + strand, within DDA3937_RS02180 at 484.168 kb on - strand, within DDA3937_RS02180 at 484.168 kb on - strand, within DDA3937_RS02180 at 484.168 kb on - strand, within DDA3937_RS02180 at 484.168 kb on - strand, within DDA3937_RS02180 at 484.227 kb on - strand, within DDA3937_RS02180 at 484.227 kb on - strand, within DDA3937_RS02180 at 484.443 kb on - strand at 484.485 kb on + strand at 484.486 kb on - strand at 484.486 kb on - strand at 484.538 kb on + strand at 484.538 kb on + strand at 484.538 kb on + strand at 484.538 kb on + strand at 484.539 kb on - strand at 484.539 kb on - strand at 484.543 kb on - strand at 484.568 kb on + strand at 484.568 kb on + strand at 484.568 kb on + strand at 484.569 kb on - strand at 484.569 kb on - strand at 484.569 kb on - strand at 484.569 kb on - strand at 484.604 kb on - strand at 484.612 kb on + strand at 484.613 kb on - strand at 484.620 kb on + strand at 484.621 kb on - strand at 484.621 kb on - strand at 484.933 kb on + strand, within DDA3937_RS02185 at 485.113 kb on + strand, within DDA3937_RS02185 at 485.113 kb on + strand, within DDA3937_RS02185 at 485.113 kb on + strand, within DDA3937_RS02185 at 485.113 kb on + strand, within DDA3937_RS02185 at 485.113 kb on + strand, within DDA3937_RS02185 at 485.113 kb on + strand, within DDA3937_RS02185 at 485.113 kb on + strand, within DDA3937_RS02185 at 485.113 kb on + strand, within DDA3937_RS02185 at 485.114 kb on - strand, within DDA3937_RS02185 at 485.114 kb on - strand at 485.114 kb on - strand, within DDA3937_RS02185 at 485.114 kb on - strand, within DDA3937_RS02185 at 485.114 kb on - strand, within DDA3937_RS02185 at 485.114 kb on - strand, within DDA3937_RS02185 at 485.114 kb on - strand, within DDA3937_RS02185 at 485.114 kb on - strand, within DDA3937_RS02185 at 485.117 kb on - strand, within DDA3937_RS02185 at 485.266 kb on + strand, within DDA3937_RS02185 at 485.392 kb on + strand, within DDA3937_RS02185 at 485.392 kb on + strand, within DDA3937_RS02185 at 485.392 kb on + strand, within DDA3937_RS02185 at 485.392 kb on + strand, within DDA3937_RS02185 at 485.393 kb on - strand, within DDA3937_RS02185 at 485.393 kb on - strand, within DDA3937_RS02185 at 485.393 kb on - strand, within DDA3937_RS02185 at 485.393 kb on - strand, within DDA3937_RS02185 at 485.393 kb on - strand, within DDA3937_RS02185 at 485.393 kb on - strand, within DDA3937_RS02185 at 485.824 kb on - strand, within DDA3937_RS02185 at 485.851 kb on + strand, within DDA3937_RS02185 at 485.852 kb on - strand, within DDA3937_RS02185 at 486.074 kb on + strand at 486.074 kb on + strand at 486.074 kb on + strand at 486.074 kb on + strand at 486.074 kb on + strand at 486.074 kb on + strand at 486.074 kb on + strand at 486.074 kb on + strand at 486.074 kb on + strand at 486.074 kb on + strand at 486.074 kb on + strand at 486.074 kb on + strand at 486.074 kb on + strand at 486.074 kb on + strand at 486.075 kb on - strand at 486.075 kb on - strand at 486.075 kb on - strand at 486.075 kb on - strand at 486.075 kb on - strand at 486.075 kb on - strand at 486.075 kb on - strand at 486.075 kb on - strand at 486.075 kb on - strand at 486.075 kb on - strand at 486.075 kb on - strand at 486.075 kb on - strand at 486.075 kb on - strand at 486.075 kb on - strand at 486.075 kb on - strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.076 kb on + strand at 486.077 kb on - strand at 486.077 kb on - strand at 486.077 kb on - strand at 486.077 kb on - strand at 486.077 kb on - strand at 486.077 kb on - strand at 486.077 kb on - strand at 486.077 kb on - strand at 486.077 kb on - strand at 486.077 kb on - strand at 486.077 kb on - strand at 486.077 kb on - strand at 486.077 kb on - strand at 486.077 kb on - strand at 486.080 kb on + strand at 486.080 kb on + strand at 486.080 kb on + strand at 486.080 kb on + strand at 486.081 kb on - strand at 486.081 kb on - strand at 486.081 kb on - strand at 486.081 kb on - strand at 486.081 kb on - strand at 486.081 kb on - strand at 486.081 kb on - strand at 486.220 kb on + strand, within DDA3937_RS02190 at 486.220 kb on + strand, within DDA3937_RS02190 at 486.220 kb on + strand, within DDA3937_RS02190 at 486.220 kb on + strand, within DDA3937_RS02190 at 486.451 kb on + strand, within DDA3937_RS02190 at 486.451 kb on + strand, within DDA3937_RS02190 at 486.451 kb on + strand, within DDA3937_RS02190 at 486.452 kb on - strand, within DDA3937_RS02190 at 486.467 kb on + strand, within DDA3937_RS02190 at 486.467 kb on + strand, within DDA3937_RS02190 at 486.467 kb on + strand, within DDA3937_RS02190 at 486.467 kb on + strand, within DDA3937_RS02190 at 486.467 kb on + strand, within DDA3937_RS02190 at 486.467 kb on + strand, within DDA3937_RS02190 at 486.467 kb on + strand, within DDA3937_RS02190 at 486.467 kb on + strand, within DDA3937_RS02190 at 486.467 kb on + strand, within DDA3937_RS02190 at 486.467 kb on + strand, within DDA3937_RS02190 at 486.468 kb on - strand, within DDA3937_RS02190 at 486.468 kb on - strand, within DDA3937_RS02190 at 486.468 kb on - strand at 486.468 kb on - strand, within DDA3937_RS02190 at 486.468 kb on - strand, within DDA3937_RS02190 at 486.468 kb on - strand, within DDA3937_RS02190 at 486.468 kb on - strand, within DDA3937_RS02190 at 486.468 kb on - strand, within DDA3937_RS02190 at 486.468 kb on - strand, within DDA3937_RS02190 at 486.512 kb on + strand, within DDA3937_RS02190 at 486.586 kb on + strand, within DDA3937_RS02190 at 486.586 kb on + strand, within DDA3937_RS02190 at 486.586 kb on + strand, within DDA3937_RS02190 at 486.586 kb on + strand, within DDA3937_RS02190 at 486.586 kb on + strand, within DDA3937_RS02190 at 486.587 kb on - strand, within DDA3937_RS02190 at 486.587 kb on - strand, within DDA3937_RS02190 at 486.591 kb on - strand, within DDA3937_RS02190 at 486.591 kb on - strand, within DDA3937_RS02190 at 486.636 kb on - strand, within DDA3937_RS02190 at 486.665 kb on + strand, within DDA3937_RS02190 at 486.665 kb on + strand, within DDA3937_RS02190 at 486.665 kb on + strand, within DDA3937_RS02190 at 486.666 kb on - strand, within DDA3937_RS02190 at 486.666 kb on - strand, within DDA3937_RS02190 at 486.666 kb on - strand, within DDA3937_RS02190 at 486.667 kb on + strand, within DDA3937_RS02190 at 486.667 kb on + strand, within DDA3937_RS02190 at 486.667 kb on + strand, within DDA3937_RS02190 at 486.667 kb on + strand, within DDA3937_RS02190 at 486.667 kb on + strand, within DDA3937_RS02190 at 486.668 kb on - strand, within DDA3937_RS02190 at 486.668 kb on - strand, within DDA3937_RS02190 at 486.668 kb on - strand, within DDA3937_RS02190 at 486.668 kb on - strand, within DDA3937_RS02190 at 486.668 kb on - strand, within DDA3937_RS02190 at 486.668 kb on - strand, within DDA3937_RS02190 at 486.668 kb on - strand, within DDA3937_RS02190 at 486.668 kb on - strand, within DDA3937_RS02190 at 486.668 kb on - strand, within DDA3937_RS02190 at 486.668 kb on - strand, within DDA3937_RS02190 at 486.671 kb on + strand, within DDA3937_RS02190 at 486.671 kb on + strand, within DDA3937_RS02190 at 486.672 kb on - strand, within DDA3937_RS02190 at 486.989 kb on - strand, within DDA3937_RS02190
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 483,643 + DDA3937_RS02175 0.88 -0.7 483,643 + DDA3937_RS02175 0.88 +0.8 483,643 + DDA3937_RS02175 0.88 -0.6 483,643 + DDA3937_RS02175 0.88 -0.4 483,644 - DDA3937_RS02175 0.89 +1.4 483,644 - DDA3937_RS02175 0.89 -1.1 483,644 - DDA3937_RS02175 0.89 -1.2 483,644 - DDA3937_RS02175 0.89 +0.6 483,644 - DDA3937_RS02175 0.89 +0.1 483,703 - +0.8 483,703 - -0.9 483,703 - +0.0 483,793 + -1.4 483,793 + +1.0 483,793 + -0.6 483,793 + -1.9 483,793 + -0.4 483,794 - +0.2 483,794 - +0.1 483,794 - -0.4 483,907 + DDA3937_RS02180 0.18 +0.5 484,078 - DDA3937_RS02180 0.45 +0.7 484,167 + DDA3937_RS02180 0.59 +1.0 484,167 + DDA3937_RS02180 0.59 -0.4 484,167 + DDA3937_RS02180 0.59 -0.2 484,168 - DDA3937_RS02180 0.59 +0.5 484,168 - DDA3937_RS02180 0.59 +0.9 484,168 - DDA3937_RS02180 0.59 -0.7 484,168 - DDA3937_RS02180 0.59 -1.9 484,227 - DDA3937_RS02180 0.68 -1.6 484,227 - DDA3937_RS02180 0.68 -0.4 484,443 - +1.7 484,485 + -1.6 484,486 - -0.2 484,486 - -0.5 484,538 + -1.8 484,538 + -0.8 484,538 + +0.1 484,538 + -1.2 484,539 - -0.2 484,539 - -1.1 484,543 - +1.1 484,568 + +0.2 484,568 + +0.3 484,568 + -1.3 484,569 - -1.0 484,569 - -0.3 484,569 - +1.7 484,569 - -0.3 484,604 - +2.0 484,612 + +0.4 484,613 - -0.7 484,620 + -0.8 484,621 - -0.7 484,621 - -0.8 484,933 + DDA3937_RS02185 0.29 -0.4 485,113 + DDA3937_RS02185 0.41 +0.3 485,113 + DDA3937_RS02185 0.41 -0.7 485,113 + DDA3937_RS02185 0.41 +1.2 485,113 + DDA3937_RS02185 0.41 -1.6 485,113 + DDA3937_RS02185 0.41 -0.6 485,113 + DDA3937_RS02185 0.41 -0.5 485,113 + DDA3937_RS02185 0.41 +0.9 485,113 + DDA3937_RS02185 0.41 +2.0 485,114 - DDA3937_RS02185 0.41 +0.5 485,114 - -0.6 485,114 - DDA3937_RS02185 0.41 -1.6 485,114 - DDA3937_RS02185 0.41 -0.8 485,114 - DDA3937_RS02185 0.41 +2.4 485,114 - DDA3937_RS02185 0.41 +1.7 485,114 - DDA3937_RS02185 0.41 -0.7 485,114 - DDA3937_RS02185 0.41 +0.2 485,117 - DDA3937_RS02185 0.41 +1.0 485,266 + DDA3937_RS02185 0.51 -0.1 485,392 + DDA3937_RS02185 0.59 -0.1 485,392 + DDA3937_RS02185 0.59 +0.7 485,392 + DDA3937_RS02185 0.59 +2.0 485,392 + DDA3937_RS02185 0.59 +0.1 485,393 - DDA3937_RS02185 0.59 +0.3 485,393 - DDA3937_RS02185 0.59 -1.6 485,393 - DDA3937_RS02185 0.59 -0.3 485,393 - DDA3937_RS02185 0.59 +3.7 485,393 - DDA3937_RS02185 0.59 -0.2 485,393 - DDA3937_RS02185 0.59 -0.7 485,824 - DDA3937_RS02185 0.86 +0.1 485,851 + DDA3937_RS02185 0.88 +0.4 485,852 - DDA3937_RS02185 0.88 -2.2 486,074 + +0.4 486,074 + +1.1 486,074 + +0.3 486,074 + +0.2 486,074 + +2.1 486,074 + +0.5 486,074 + +0.1 486,074 + +0.4 486,074 + -1.9 486,074 + -0.3 486,074 + -1.2 486,074 + +1.6 486,074 + -2.3 486,074 + -2.2 486,075 - +0.6 486,075 - -1.6 486,075 - -0.4 486,075 - -0.6 486,075 - +2.7 486,075 - -0.8 486,075 - -0.2 486,075 - +2.4 486,075 - -1.4 486,075 - +1.2 486,075 - +3.0 486,075 - +3.0 486,075 - -0.1 486,075 - +0.4 486,075 - -1.8 486,076 + -0.4 486,076 + +0.3 486,076 + -1.2 486,076 + +0.6 486,076 + -0.6 486,076 + -2.5 486,076 + -0.9 486,076 + +0.7 486,076 + -0.8 486,076 + -1.1 486,076 + +2.1 486,076 + -2.1 486,077 - +0.5 486,077 - +0.6 486,077 - +1.4 486,077 - -2.7 486,077 - -0.9 486,077 - -0.5 486,077 - -0.6 486,077 - -0.7 486,077 - -0.9 486,077 - +0.7 486,077 - -1.3 486,077 - -1.4 486,077 - -0.5 486,077 - -0.4 486,080 + -0.2 486,080 + +3.8 486,080 + +1.3 486,080 + -0.0 486,081 - -0.2 486,081 - +1.1 486,081 - +0.1 486,081 - -2.3 486,081 - +0.5 486,081 - +0.3 486,081 - -1.2 486,220 + DDA3937_RS02190 0.16 +0.7 486,220 + DDA3937_RS02190 0.16 +1.2 486,220 + DDA3937_RS02190 0.16 -0.6 486,220 + DDA3937_RS02190 0.16 +0.1 486,451 + DDA3937_RS02190 0.37 +0.4 486,451 + DDA3937_RS02190 0.37 +0.2 486,451 + DDA3937_RS02190 0.37 +0.8 486,452 - DDA3937_RS02190 0.37 -0.2 486,467 + DDA3937_RS02190 0.39 -0.7 486,467 + DDA3937_RS02190 0.39 -0.4 486,467 + DDA3937_RS02190 0.39 +0.6 486,467 + DDA3937_RS02190 0.39 +0.6 486,467 + DDA3937_RS02190 0.39 -0.0 486,467 + DDA3937_RS02190 0.39 +0.0 486,467 + DDA3937_RS02190 0.39 -0.1 486,467 + DDA3937_RS02190 0.39 -0.6 486,467 + DDA3937_RS02190 0.39 -0.4 486,467 + DDA3937_RS02190 0.39 -0.5 486,468 - DDA3937_RS02190 0.39 +0.8 486,468 - DDA3937_RS02190 0.39 +0.4 486,468 - -0.2 486,468 - DDA3937_RS02190 0.39 -1.4 486,468 - DDA3937_RS02190 0.39 -0.8 486,468 - DDA3937_RS02190 0.39 +1.0 486,468 - DDA3937_RS02190 0.39 -0.2 486,468 - DDA3937_RS02190 0.39 -0.4 486,468 - DDA3937_RS02190 0.39 +0.1 486,512 + DDA3937_RS02190 0.43 -1.6 486,586 + DDA3937_RS02190 0.50 -0.7 486,586 + DDA3937_RS02190 0.50 -0.6 486,586 + DDA3937_RS02190 0.50 +0.1 486,586 + DDA3937_RS02190 0.50 -0.5 486,586 + DDA3937_RS02190 0.50 +0.0 486,587 - DDA3937_RS02190 0.50 -1.4 486,587 - DDA3937_RS02190 0.50 +0.5 486,591 - DDA3937_RS02190 0.50 +1.0 486,591 - DDA3937_RS02190 0.50 +0.4 486,636 - DDA3937_RS02190 0.55 -2.6 486,665 + DDA3937_RS02190 0.57 +1.4 486,665 + DDA3937_RS02190 0.57 +2.3 486,665 + DDA3937_RS02190 0.57 +0.4 486,666 - DDA3937_RS02190 0.57 +1.1 486,666 - DDA3937_RS02190 0.57 +0.7 486,666 - DDA3937_RS02190 0.57 -0.9 486,667 + DDA3937_RS02190 0.57 +1.2 486,667 + DDA3937_RS02190 0.57 +0.3 486,667 + DDA3937_RS02190 0.57 +1.1 486,667 + DDA3937_RS02190 0.57 +0.3 486,667 + DDA3937_RS02190 0.57 +0.8 486,668 - DDA3937_RS02190 0.58 -0.1 486,668 - DDA3937_RS02190 0.58 +0.3 486,668 - DDA3937_RS02190 0.58 -1.0 486,668 - DDA3937_RS02190 0.58 -0.2 486,668 - DDA3937_RS02190 0.58 -0.4 486,668 - DDA3937_RS02190 0.58 -1.7 486,668 - DDA3937_RS02190 0.58 -0.6 486,668 - DDA3937_RS02190 0.58 +0.9 486,668 - DDA3937_RS02190 0.58 -0.8 486,668 - DDA3937_RS02190 0.58 -1.4 486,671 + DDA3937_RS02190 0.58 -1.5 486,671 + DDA3937_RS02190 0.58 -1.8 486,672 - DDA3937_RS02190 0.58 +2.1 486,989 - DDA3937_RS02190 0.88 -0.6
Or see this region's nucleotide sequence