Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02095 and DDA3937_RS02100 are separated by 2 nucleotides DDA3937_RS02100 and DDA3937_RS22985 are separated by 132 nucleotides DDA3937_RS22985 and DDA3937_RS02105 overlap by 5 nucleotides DDA3937_RS02105 and DDA3937_RS02110 are separated by 48 nucleotides DDA3937_RS02110 and DDA3937_RS02115 are separated by 70 nucleotides
DDA3937_RS02095: DDA3937_RS02095 - Dabb family protein, at 468,753 to 469,127
_RS02095
DDA3937_RS02100: DDA3937_RS02100 - DUF2000 domain-containing protein, at 469,130 to 469,552
_RS02100
DDA3937_RS22985: DDA3937_RS22985 - phenylacetate--CoA ligase, at 469,685 to 470,092
_RS22985
DDA3937_RS02105: DDA3937_RS02105 - bacilysin biosynthesis protein BacA, at 470,088 to 470,440
_RS02105
DDA3937_RS02110: DDA3937_RS02110 - LysE family translocator, at 470,489 to 471,115
_RS02110
DDA3937_RS02115: DDA3937_RS02115 - amino acid transporter, at 471,186 to 471,812
_RS02115
Position (kb) 470
471 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 469.100 kb on + strand at 469.101 kb on - strand at 469.126 kb on - strand at 469.222 kb on + strand, within DDA3937_RS02100 at 469.289 kb on + strand, within DDA3937_RS02100 at 469.289 kb on + strand, within DDA3937_RS02100 at 469.304 kb on + strand, within DDA3937_RS02100 at 469.304 kb on + strand, within DDA3937_RS02100 at 469.304 kb on + strand, within DDA3937_RS02100 at 469.304 kb on + strand, within DDA3937_RS02100 at 469.305 kb on - strand, within DDA3937_RS02100 at 469.305 kb on - strand, within DDA3937_RS02100 at 469.305 kb on - strand, within DDA3937_RS02100 at 469.305 kb on - strand, within DDA3937_RS02100 at 469.341 kb on - strand, within DDA3937_RS02100 at 469.341 kb on - strand, within DDA3937_RS02100 at 469.386 kb on - strand at 469.386 kb on - strand, within DDA3937_RS02100 at 469.407 kb on + strand, within DDA3937_RS02100 at 469.427 kb on + strand, within DDA3937_RS02100 at 469.427 kb on + strand, within DDA3937_RS02100 at 469.427 kb on + strand, within DDA3937_RS02100 at 469.437 kb on - strand, within DDA3937_RS02100 at 469.437 kb on - strand, within DDA3937_RS02100 at 469.437 kb on - strand, within DDA3937_RS02100 at 469.479 kb on + strand, within DDA3937_RS02100 at 469.480 kb on - strand, within DDA3937_RS02100 at 469.494 kb on + strand, within DDA3937_RS02100 at 469.494 kb on + strand, within DDA3937_RS02100 at 469.679 kb on + strand at 469.684 kb on + strand at 469.685 kb on - strand at 469.685 kb on - strand at 469.689 kb on - strand at 469.689 kb on - strand at 469.694 kb on - strand at 469.729 kb on + strand, within DDA3937_RS22985 at 469.729 kb on + strand, within DDA3937_RS22985 at 469.729 kb on + strand, within DDA3937_RS22985 at 469.729 kb on + strand, within DDA3937_RS22985 at 469.730 kb on - strand, within DDA3937_RS22985 at 469.730 kb on - strand, within DDA3937_RS22985 at 469.732 kb on - strand, within DDA3937_RS22985 at 469.732 kb on - strand, within DDA3937_RS22985 at 469.733 kb on + strand, within DDA3937_RS22985 at 469.819 kb on - strand, within DDA3937_RS22985 at 469.877 kb on - strand, within DDA3937_RS22985 at 469.877 kb on - strand, within DDA3937_RS22985 at 469.909 kb on - strand, within DDA3937_RS22985 at 469.927 kb on + strand, within DDA3937_RS22985 at 469.995 kb on - strand, within DDA3937_RS22985 at 470.058 kb on + strand at 470.059 kb on - strand at 470.059 kb on - strand at 470.059 kb on - strand at 470.059 kb on - strand at 470.062 kb on + strand at 470.063 kb on - strand at 470.063 kb on - strand at 470.063 kb on - strand at 470.068 kb on + strand at 470.121 kb on - strand at 470.168 kb on + strand, within DDA3937_RS02105 at 470.168 kb on + strand, within DDA3937_RS02105 at 470.168 kb on + strand, within DDA3937_RS02105 at 470.169 kb on - strand, within DDA3937_RS02105 at 470.171 kb on - strand, within DDA3937_RS02105 at 470.212 kb on + strand, within DDA3937_RS02105 at 470.223 kb on - strand, within DDA3937_RS02105 at 470.296 kb on + strand, within DDA3937_RS02105 at 470.297 kb on - strand, within DDA3937_RS02105 at 470.322 kb on + strand, within DDA3937_RS02105 at 470.323 kb on - strand, within DDA3937_RS02105 at 470.396 kb on - strand, within DDA3937_RS02105 at 470.438 kb on + strand at 470.456 kb on - strand at 470.457 kb on + strand at 470.457 kb on + strand at 470.457 kb on + strand at 470.457 kb on + strand at 470.458 kb on - strand at 470.458 kb on - strand at 470.516 kb on + strand at 470.516 kb on + strand at 470.516 kb on + strand at 470.516 kb on + strand at 470.516 kb on + strand at 470.517 kb on - strand at 470.517 kb on - strand at 470.517 kb on - strand at 470.518 kb on + strand at 470.518 kb on + strand at 470.518 kb on + strand at 470.519 kb on - strand at 470.519 kb on - strand at 470.519 kb on - strand at 470.519 kb on - strand at 470.519 kb on - strand at 470.519 kb on - strand at 470.519 kb on - strand at 470.611 kb on + strand, within DDA3937_RS02110 at 470.611 kb on + strand, within DDA3937_RS02110 at 470.611 kb on + strand, within DDA3937_RS02110 at 470.611 kb on + strand, within DDA3937_RS02110 at 470.611 kb on + strand, within DDA3937_RS02110 at 470.611 kb on + strand, within DDA3937_RS02110 at 470.612 kb on - strand at 470.612 kb on - strand, within DDA3937_RS02110 at 470.612 kb on - strand, within DDA3937_RS02110 at 470.612 kb on - strand, within DDA3937_RS02110 at 470.614 kb on + strand, within DDA3937_RS02110 at 470.614 kb on + strand, within DDA3937_RS02110 at 470.614 kb on + strand at 470.614 kb on + strand, within DDA3937_RS02110 at 470.614 kb on + strand, within DDA3937_RS02110 at 470.615 kb on - strand, within DDA3937_RS02110 at 470.648 kb on + strand, within DDA3937_RS02110 at 470.648 kb on + strand, within DDA3937_RS02110 at 470.648 kb on + strand, within DDA3937_RS02110 at 470.649 kb on - strand, within DDA3937_RS02110 at 470.693 kb on + strand, within DDA3937_RS02110 at 470.693 kb on + strand, within DDA3937_RS02110 at 470.693 kb on + strand, within DDA3937_RS02110 at 470.693 kb on + strand, within DDA3937_RS02110 at 470.693 kb on + strand, within DDA3937_RS02110 at 470.693 kb on + strand, within DDA3937_RS02110 at 470.693 kb on + strand, within DDA3937_RS02110 at 470.694 kb on - strand, within DDA3937_RS02110 at 470.694 kb on - strand, within DDA3937_RS02110 at 470.694 kb on - strand, within DDA3937_RS02110 at 470.694 kb on - strand, within DDA3937_RS02110 at 470.707 kb on + strand, within DDA3937_RS02110 at 470.845 kb on + strand, within DDA3937_RS02110 at 470.845 kb on + strand, within DDA3937_RS02110 at 470.846 kb on - strand, within DDA3937_RS02110 at 470.846 kb on - strand, within DDA3937_RS02110 at 470.848 kb on + strand, within DDA3937_RS02110 at 470.849 kb on - strand, within DDA3937_RS02110 at 470.879 kb on + strand, within DDA3937_RS02110 at 470.879 kb on + strand, within DDA3937_RS02110 at 470.880 kb on - strand, within DDA3937_RS02110 at 470.880 kb on - strand, within DDA3937_RS02110 at 470.880 kb on - strand, within DDA3937_RS02110 at 470.979 kb on + strand, within DDA3937_RS02110 at 470.979 kb on + strand, within DDA3937_RS02110 at 470.979 kb on + strand, within DDA3937_RS02110 at 470.980 kb on - strand, within DDA3937_RS02110 at 471.024 kb on + strand, within DDA3937_RS02110 at 471.073 kb on + strand at 471.073 kb on + strand at 471.073 kb on + strand at 471.113 kb on + strand at 471.113 kb on + strand at 471.114 kb on - strand at 471.114 kb on - strand at 471.114 kb on - strand at 471.129 kb on + strand at 471.130 kb on - strand at 471.145 kb on + strand at 471.145 kb on + strand at 471.145 kb on + strand at 471.187 kb on + strand at 471.187 kb on + strand at 471.188 kb on - strand at 471.188 kb on - strand at 471.188 kb on - strand at 471.189 kb on + strand at 471.189 kb on + strand at 471.190 kb on - strand at 471.190 kb on - strand at 471.196 kb on + strand at 471.196 kb on + strand at 471.224 kb on + strand at 471.235 kb on + strand at 471.236 kb on - strand at 471.322 kb on + strand, within DDA3937_RS02115 at 471.322 kb on + strand, within DDA3937_RS02115 at 471.323 kb on - strand, within DDA3937_RS02115 at 471.323 kb on - strand, within DDA3937_RS02115 at 471.332 kb on + strand, within DDA3937_RS02115 at 471.333 kb on - strand, within DDA3937_RS02115 at 471.333 kb on - strand, within DDA3937_RS02115 at 471.361 kb on + strand, within DDA3937_RS02115 at 471.361 kb on + strand, within DDA3937_RS02115 at 471.362 kb on - strand, within DDA3937_RS02115 at 471.427 kb on + strand, within DDA3937_RS02115 at 471.427 kb on + strand, within DDA3937_RS02115 at 471.428 kb on - strand, within DDA3937_RS02115
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 469,100 + -1.3 469,101 - -1.4 469,126 - +0.3 469,222 + DDA3937_RS02100 0.22 +1.0 469,289 + DDA3937_RS02100 0.38 -0.3 469,289 + DDA3937_RS02100 0.38 -0.8 469,304 + DDA3937_RS02100 0.41 -0.0 469,304 + DDA3937_RS02100 0.41 +0.6 469,304 + DDA3937_RS02100 0.41 -0.1 469,304 + DDA3937_RS02100 0.41 +0.3 469,305 - DDA3937_RS02100 0.41 +2.0 469,305 - DDA3937_RS02100 0.41 +0.8 469,305 - DDA3937_RS02100 0.41 -1.1 469,305 - DDA3937_RS02100 0.41 -0.7 469,341 - DDA3937_RS02100 0.50 -1.0 469,341 - DDA3937_RS02100 0.50 +2.0 469,386 - +2.4 469,386 - DDA3937_RS02100 0.61 -1.1 469,407 + DDA3937_RS02100 0.65 -0.3 469,427 + DDA3937_RS02100 0.70 -1.4 469,427 + DDA3937_RS02100 0.70 -1.7 469,427 + DDA3937_RS02100 0.70 -0.1 469,437 - DDA3937_RS02100 0.73 -0.3 469,437 - DDA3937_RS02100 0.73 -0.2 469,437 - DDA3937_RS02100 0.73 -1.1 469,479 + DDA3937_RS02100 0.83 +0.6 469,480 - DDA3937_RS02100 0.83 +1.1 469,494 + DDA3937_RS02100 0.86 +2.6 469,494 + DDA3937_RS02100 0.86 -0.0 469,679 + +2.7 469,684 + -0.7 469,685 - +0.7 469,685 - +0.4 469,689 - +0.5 469,689 - -1.4 469,694 - -0.6 469,729 + DDA3937_RS22985 0.11 +0.3 469,729 + DDA3937_RS22985 0.11 -1.1 469,729 + DDA3937_RS22985 0.11 -0.3 469,729 + DDA3937_RS22985 0.11 +0.5 469,730 - DDA3937_RS22985 0.11 +0.8 469,730 - DDA3937_RS22985 0.11 -0.0 469,732 - DDA3937_RS22985 0.12 -0.6 469,732 - DDA3937_RS22985 0.12 -2.5 469,733 + DDA3937_RS22985 0.12 +1.5 469,819 - DDA3937_RS22985 0.33 -0.1 469,877 - DDA3937_RS22985 0.47 -0.7 469,877 - DDA3937_RS22985 0.47 +0.0 469,909 - DDA3937_RS22985 0.55 -0.9 469,927 + DDA3937_RS22985 0.59 -0.3 469,995 - DDA3937_RS22985 0.76 +2.4 470,058 + +0.7 470,059 - -0.1 470,059 - -0.3 470,059 - +0.0 470,059 - -2.5 470,062 + +0.6 470,063 - -1.2 470,063 - +0.1 470,063 - -1.6 470,068 + +0.2 470,121 - +0.9 470,168 + DDA3937_RS02105 0.23 -0.7 470,168 + DDA3937_RS02105 0.23 -1.5 470,168 + DDA3937_RS02105 0.23 -1.3 470,169 - DDA3937_RS02105 0.23 +0.6 470,171 - DDA3937_RS02105 0.24 -1.4 470,212 + DDA3937_RS02105 0.35 -1.2 470,223 - DDA3937_RS02105 0.38 -0.9 470,296 + DDA3937_RS02105 0.59 +3.5 470,297 - DDA3937_RS02105 0.59 +1.3 470,322 + DDA3937_RS02105 0.66 -1.8 470,323 - DDA3937_RS02105 0.67 -0.6 470,396 - DDA3937_RS02105 0.87 +1.5 470,438 + -0.6 470,456 - +0.2 470,457 + -1.6 470,457 + -0.0 470,457 + -1.1 470,457 + -1.2 470,458 - -2.2 470,458 - +2.3 470,516 + +1.0 470,516 + -0.5 470,516 + -0.2 470,516 + +0.5 470,516 + +0.0 470,517 - +0.4 470,517 - -0.6 470,517 - -0.7 470,518 + +0.2 470,518 + +0.2 470,518 + +0.9 470,519 - +0.5 470,519 - -0.3 470,519 - -0.7 470,519 - -2.1 470,519 - -0.2 470,519 - +0.8 470,519 - -1.8 470,611 + DDA3937_RS02110 0.19 -3.4 470,611 + DDA3937_RS02110 0.19 -0.3 470,611 + DDA3937_RS02110 0.19 +0.4 470,611 + DDA3937_RS02110 0.19 -0.3 470,611 + DDA3937_RS02110 0.19 +1.1 470,611 + DDA3937_RS02110 0.19 -0.2 470,612 - -0.2 470,612 - DDA3937_RS02110 0.20 -0.4 470,612 - DDA3937_RS02110 0.20 +0.7 470,612 - DDA3937_RS02110 0.20 -1.8 470,614 + DDA3937_RS02110 0.20 -0.4 470,614 + DDA3937_RS02110 0.20 +0.2 470,614 + +1.4 470,614 + DDA3937_RS02110 0.20 +0.1 470,614 + DDA3937_RS02110 0.20 -0.9 470,615 - DDA3937_RS02110 0.20 -0.6 470,648 + DDA3937_RS02110 0.25 -0.3 470,648 + DDA3937_RS02110 0.25 -1.0 470,648 + DDA3937_RS02110 0.25 +0.5 470,649 - DDA3937_RS02110 0.26 +2.6 470,693 + DDA3937_RS02110 0.33 +1.0 470,693 + DDA3937_RS02110 0.33 -0.0 470,693 + DDA3937_RS02110 0.33 -1.3 470,693 + DDA3937_RS02110 0.33 -0.2 470,693 + DDA3937_RS02110 0.33 +0.7 470,693 + DDA3937_RS02110 0.33 +1.0 470,693 + DDA3937_RS02110 0.33 +1.2 470,694 - DDA3937_RS02110 0.33 -1.0 470,694 - DDA3937_RS02110 0.33 -0.2 470,694 - DDA3937_RS02110 0.33 -0.9 470,694 - DDA3937_RS02110 0.33 -0.2 470,707 + DDA3937_RS02110 0.35 -1.1 470,845 + DDA3937_RS02110 0.57 +0.1 470,845 + DDA3937_RS02110 0.57 +1.8 470,846 - DDA3937_RS02110 0.57 -0.4 470,846 - DDA3937_RS02110 0.57 -0.6 470,848 + DDA3937_RS02110 0.57 +0.7 470,849 - DDA3937_RS02110 0.57 +0.4 470,879 + DDA3937_RS02110 0.62 -0.0 470,879 + DDA3937_RS02110 0.62 +1.2 470,880 - DDA3937_RS02110 0.62 +1.3 470,880 - DDA3937_RS02110 0.62 -1.4 470,880 - DDA3937_RS02110 0.62 -0.6 470,979 + DDA3937_RS02110 0.78 -0.1 470,979 + DDA3937_RS02110 0.78 +0.5 470,979 + DDA3937_RS02110 0.78 +0.4 470,980 - DDA3937_RS02110 0.78 -0.8 471,024 + DDA3937_RS02110 0.85 +0.0 471,073 + +0.2 471,073 + -0.8 471,073 + -1.5 471,113 + -0.6 471,113 + +0.2 471,114 - -0.5 471,114 - -0.2 471,114 - -0.2 471,129 + -0.9 471,130 - -0.5 471,145 + -0.8 471,145 + -0.8 471,145 + +1.7 471,187 + +0.4 471,187 + -1.4 471,188 - -0.4 471,188 - -1.8 471,188 - -0.9 471,189 + +0.2 471,189 + -1.9 471,190 - -1.4 471,190 - +0.2 471,196 + -0.4 471,196 + -0.7 471,224 + -0.5 471,235 + -0.4 471,236 - -0.0 471,322 + DDA3937_RS02115 0.22 -2.4 471,322 + DDA3937_RS02115 0.22 -0.3 471,323 - DDA3937_RS02115 0.22 +1.1 471,323 - DDA3937_RS02115 0.22 -0.6 471,332 + DDA3937_RS02115 0.23 -0.7 471,333 - DDA3937_RS02115 0.23 -2.4 471,333 - DDA3937_RS02115 0.23 -0.5 471,361 + DDA3937_RS02115 0.28 -2.0 471,361 + DDA3937_RS02115 0.28 -0.2 471,362 - DDA3937_RS02115 0.28 -0.5 471,427 + DDA3937_RS02115 0.38 +0.4 471,427 + DDA3937_RS02115 0.38 +0.5 471,428 - DDA3937_RS02115 0.39 -0.1
Or see this region's nucleotide sequence