Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02090 and DDA3937_RS02095 are separated by 163 nucleotides DDA3937_RS02095 and DDA3937_RS02100 are separated by 2 nucleotides DDA3937_RS02100 and DDA3937_RS22985 are separated by 132 nucleotides DDA3937_RS22985 and DDA3937_RS02105 overlap by 5 nucleotides DDA3937_RS02105 and DDA3937_RS02110 are separated by 48 nucleotides
DDA3937_RS02090: DDA3937_RS02090 - Lrp/AsnC family transcriptional regulator, at 468,107 to 468,589
_RS02090
DDA3937_RS02095: DDA3937_RS02095 - Dabb family protein, at 468,753 to 469,127
_RS02095
DDA3937_RS02100: DDA3937_RS02100 - DUF2000 domain-containing protein, at 469,130 to 469,552
_RS02100
DDA3937_RS22985: DDA3937_RS22985 - phenylacetate--CoA ligase, at 469,685 to 470,092
_RS22985
DDA3937_RS02105: DDA3937_RS02105 - bacilysin biosynthesis protein BacA, at 470,088 to 470,440
_RS02105
DDA3937_RS02110: DDA3937_RS02110 - LysE family translocator, at 470,489 to 471,115
_RS02110
Position (kb) 469
470 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 468.178 kb on + strand, within DDA3937_RS02090 at 468.179 kb on - strand, within DDA3937_RS02090 at 468.223 kb on + strand, within DDA3937_RS02090 at 468.238 kb on - strand, within DDA3937_RS02090 at 468.297 kb on + strand, within DDA3937_RS02090 at 468.298 kb on - strand, within DDA3937_RS02090 at 468.298 kb on - strand, within DDA3937_RS02090 at 468.389 kb on + strand, within DDA3937_RS02090 at 468.389 kb on + strand, within DDA3937_RS02090 at 468.390 kb on - strand, within DDA3937_RS02090 at 468.499 kb on + strand, within DDA3937_RS02090 at 468.499 kb on + strand, within DDA3937_RS02090 at 468.499 kb on + strand, within DDA3937_RS02090 at 468.499 kb on + strand, within DDA3937_RS02090 at 468.499 kb on + strand, within DDA3937_RS02090 at 468.499 kb on + strand, within DDA3937_RS02090 at 468.499 kb on + strand, within DDA3937_RS02090 at 468.500 kb on - strand, within DDA3937_RS02090 at 468.500 kb on - strand, within DDA3937_RS02090 at 468.500 kb on - strand, within DDA3937_RS02090 at 468.500 kb on - strand, within DDA3937_RS02090 at 468.500 kb on - strand, within DDA3937_RS02090 at 468.500 kb on - strand, within DDA3937_RS02090 at 468.500 kb on - strand, within DDA3937_RS02090 at 468.500 kb on - strand, within DDA3937_RS02090 at 468.500 kb on - strand, within DDA3937_RS02090 at 468.500 kb on - strand, within DDA3937_RS02090 at 468.500 kb on - strand, within DDA3937_RS02090 at 468.500 kb on - strand, within DDA3937_RS02090 at 468.500 kb on - strand, within DDA3937_RS02090 at 468.503 kb on + strand, within DDA3937_RS02090 at 468.503 kb on + strand, within DDA3937_RS02090 at 468.503 kb on + strand, within DDA3937_RS02090 at 468.504 kb on - strand, within DDA3937_RS02090 at 468.504 kb on - strand, within DDA3937_RS02090 at 468.504 kb on - strand, within DDA3937_RS02090 at 468.504 kb on - strand, within DDA3937_RS02090 at 468.504 kb on - strand, within DDA3937_RS02090 at 468.576 kb on - strand at 468.619 kb on + strand at 468.620 kb on - strand at 468.620 kb on - strand at 468.663 kb on - strand at 468.664 kb on + strand at 468.664 kb on + strand at 468.664 kb on + strand at 468.664 kb on + strand at 468.664 kb on + strand at 468.664 kb on + strand at 468.664 kb on + strand at 468.664 kb on + strand at 468.664 kb on + strand at 468.664 kb on + strand at 468.664 kb on + strand at 468.664 kb on + strand at 468.664 kb on + strand at 468.664 kb on + strand at 468.665 kb on - strand at 468.665 kb on - strand at 468.665 kb on - strand at 468.665 kb on - strand at 468.665 kb on - strand at 468.665 kb on - strand at 468.665 kb on - strand at 468.711 kb on + strand at 468.752 kb on + strand at 468.752 kb on + strand at 468.752 kb on + strand at 468.752 kb on + strand at 468.753 kb on - strand at 468.753 kb on - strand at 468.753 kb on - strand at 468.764 kb on + strand at 468.764 kb on + strand at 468.765 kb on - strand at 468.765 kb on - strand at 468.765 kb on - strand at 468.765 kb on - strand at 468.765 kb on - strand at 468.765 kb on - strand at 468.793 kb on - strand, within DDA3937_RS02095 at 468.794 kb on + strand, within DDA3937_RS02095 at 468.794 kb on + strand, within DDA3937_RS02095 at 468.795 kb on - strand, within DDA3937_RS02095 at 468.795 kb on - strand, within DDA3937_RS02095 at 468.795 kb on - strand, within DDA3937_RS02095 at 468.795 kb on - strand, within DDA3937_RS02095 at 468.795 kb on - strand, within DDA3937_RS02095 at 468.795 kb on - strand, within DDA3937_RS02095 at 468.833 kb on + strand, within DDA3937_RS02095 at 468.833 kb on + strand, within DDA3937_RS02095 at 468.833 kb on + strand at 468.854 kb on + strand, within DDA3937_RS02095 at 468.854 kb on + strand, within DDA3937_RS02095 at 468.855 kb on - strand, within DDA3937_RS02095 at 468.855 kb on - strand, within DDA3937_RS02095 at 468.890 kb on + strand, within DDA3937_RS02095 at 468.890 kb on + strand, within DDA3937_RS02095 at 468.891 kb on - strand, within DDA3937_RS02095 at 468.891 kb on - strand, within DDA3937_RS02095 at 468.893 kb on + strand, within DDA3937_RS02095 at 468.894 kb on - strand, within DDA3937_RS02095 at 468.900 kb on - strand, within DDA3937_RS02095 at 468.900 kb on - strand, within DDA3937_RS02095 at 468.928 kb on + strand, within DDA3937_RS02095 at 468.929 kb on - strand, within DDA3937_RS02095 at 468.932 kb on + strand, within DDA3937_RS02095 at 468.932 kb on + strand, within DDA3937_RS02095 at 468.933 kb on - strand, within DDA3937_RS02095 at 468.933 kb on - strand, within DDA3937_RS02095 at 468.933 kb on - strand, within DDA3937_RS02095 at 468.933 kb on - strand, within DDA3937_RS02095 at 468.933 kb on - strand, within DDA3937_RS02095 at 468.933 kb on - strand, within DDA3937_RS02095 at 468.933 kb on - strand, within DDA3937_RS02095 at 468.963 kb on + strand, within DDA3937_RS02095 at 468.963 kb on + strand, within DDA3937_RS02095 at 468.963 kb on + strand, within DDA3937_RS02095 at 468.964 kb on - strand, within DDA3937_RS02095 at 469.027 kb on + strand, within DDA3937_RS02095 at 469.065 kb on + strand, within DDA3937_RS02095 at 469.066 kb on - strand, within DDA3937_RS02095 at 469.066 kb on - strand, within DDA3937_RS02095 at 469.066 kb on - strand, within DDA3937_RS02095 at 469.066 kb on - strand, within DDA3937_RS02095 at 469.066 kb on - strand, within DDA3937_RS02095 at 469.066 kb on - strand, within DDA3937_RS02095 at 469.066 kb on - strand, within DDA3937_RS02095 at 469.075 kb on + strand, within DDA3937_RS02095 at 469.076 kb on - strand, within DDA3937_RS02095 at 469.100 kb on + strand at 469.101 kb on - strand at 469.126 kb on - strand at 469.222 kb on + strand, within DDA3937_RS02100 at 469.289 kb on + strand, within DDA3937_RS02100 at 469.289 kb on + strand, within DDA3937_RS02100 at 469.304 kb on + strand, within DDA3937_RS02100 at 469.304 kb on + strand, within DDA3937_RS02100 at 469.304 kb on + strand, within DDA3937_RS02100 at 469.304 kb on + strand, within DDA3937_RS02100 at 469.305 kb on - strand, within DDA3937_RS02100 at 469.305 kb on - strand, within DDA3937_RS02100 at 469.305 kb on - strand, within DDA3937_RS02100 at 469.305 kb on - strand, within DDA3937_RS02100 at 469.341 kb on - strand, within DDA3937_RS02100 at 469.341 kb on - strand, within DDA3937_RS02100 at 469.386 kb on - strand at 469.386 kb on - strand, within DDA3937_RS02100 at 469.407 kb on + strand, within DDA3937_RS02100 at 469.427 kb on + strand, within DDA3937_RS02100 at 469.427 kb on + strand, within DDA3937_RS02100 at 469.427 kb on + strand, within DDA3937_RS02100 at 469.437 kb on - strand, within DDA3937_RS02100 at 469.437 kb on - strand, within DDA3937_RS02100 at 469.437 kb on - strand, within DDA3937_RS02100 at 469.479 kb on + strand, within DDA3937_RS02100 at 469.480 kb on - strand, within DDA3937_RS02100 at 469.494 kb on + strand, within DDA3937_RS02100 at 469.494 kb on + strand, within DDA3937_RS02100 at 469.679 kb on + strand at 469.684 kb on + strand at 469.685 kb on - strand at 469.685 kb on - strand at 469.689 kb on - strand at 469.689 kb on - strand at 469.694 kb on - strand at 469.729 kb on + strand, within DDA3937_RS22985 at 469.729 kb on + strand, within DDA3937_RS22985 at 469.729 kb on + strand, within DDA3937_RS22985 at 469.729 kb on + strand, within DDA3937_RS22985 at 469.730 kb on - strand, within DDA3937_RS22985 at 469.730 kb on - strand, within DDA3937_RS22985 at 469.732 kb on - strand, within DDA3937_RS22985 at 469.732 kb on - strand, within DDA3937_RS22985 at 469.733 kb on + strand, within DDA3937_RS22985 at 469.819 kb on - strand, within DDA3937_RS22985 at 469.877 kb on - strand, within DDA3937_RS22985 at 469.877 kb on - strand, within DDA3937_RS22985 at 469.909 kb on - strand, within DDA3937_RS22985 at 469.927 kb on + strand, within DDA3937_RS22985 at 469.995 kb on - strand, within DDA3937_RS22985 at 470.058 kb on + strand at 470.059 kb on - strand at 470.059 kb on - strand at 470.059 kb on - strand at 470.059 kb on - strand at 470.062 kb on + strand at 470.063 kb on - strand at 470.063 kb on - strand at 470.063 kb on - strand at 470.068 kb on + strand at 470.121 kb on - strand at 470.168 kb on + strand, within DDA3937_RS02105 at 470.168 kb on + strand, within DDA3937_RS02105 at 470.168 kb on + strand, within DDA3937_RS02105 at 470.169 kb on - strand, within DDA3937_RS02105 at 470.171 kb on - strand, within DDA3937_RS02105 at 470.212 kb on + strand, within DDA3937_RS02105 at 470.223 kb on - strand, within DDA3937_RS02105 at 470.296 kb on + strand, within DDA3937_RS02105 at 470.297 kb on - strand, within DDA3937_RS02105 at 470.322 kb on + strand, within DDA3937_RS02105 at 470.323 kb on - strand, within DDA3937_RS02105 at 470.396 kb on - strand, within DDA3937_RS02105 at 470.438 kb on + strand at 470.456 kb on - strand at 470.457 kb on + strand at 470.457 kb on + strand at 470.457 kb on + strand at 470.457 kb on + strand at 470.458 kb on - strand at 470.458 kb on - strand at 470.516 kb on + strand at 470.516 kb on + strand at 470.516 kb on + strand at 470.516 kb on + strand at 470.516 kb on + strand at 470.517 kb on - strand at 470.517 kb on - strand at 470.517 kb on - strand at 470.518 kb on + strand at 470.518 kb on + strand at 470.518 kb on + strand at 470.519 kb on - strand at 470.519 kb on - strand at 470.519 kb on - strand at 470.519 kb on - strand at 470.519 kb on - strand at 470.519 kb on - strand at 470.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 468,178 + DDA3937_RS02090 0.15 +1.4 468,179 - DDA3937_RS02090 0.15 -1.2 468,223 + DDA3937_RS02090 0.24 -0.5 468,238 - DDA3937_RS02090 0.27 -0.3 468,297 + DDA3937_RS02090 0.39 -0.5 468,298 - DDA3937_RS02090 0.40 -1.5 468,298 - DDA3937_RS02090 0.40 -0.1 468,389 + DDA3937_RS02090 0.58 -0.2 468,389 + DDA3937_RS02090 0.58 +0.1 468,390 - DDA3937_RS02090 0.59 -0.7 468,499 + DDA3937_RS02090 0.81 -1.0 468,499 + DDA3937_RS02090 0.81 -0.5 468,499 + DDA3937_RS02090 0.81 +0.1 468,499 + DDA3937_RS02090 0.81 -1.2 468,499 + DDA3937_RS02090 0.81 -0.2 468,499 + DDA3937_RS02090 0.81 -1.2 468,499 + DDA3937_RS02090 0.81 -0.8 468,500 - DDA3937_RS02090 0.81 -0.2 468,500 - DDA3937_RS02090 0.81 -0.1 468,500 - DDA3937_RS02090 0.81 +1.2 468,500 - DDA3937_RS02090 0.81 +0.6 468,500 - DDA3937_RS02090 0.81 -0.8 468,500 - DDA3937_RS02090 0.81 +0.9 468,500 - DDA3937_RS02090 0.81 -0.7 468,500 - DDA3937_RS02090 0.81 -0.2 468,500 - DDA3937_RS02090 0.81 +0.1 468,500 - DDA3937_RS02090 0.81 -1.4 468,500 - DDA3937_RS02090 0.81 +0.1 468,500 - DDA3937_RS02090 0.81 -0.3 468,500 - DDA3937_RS02090 0.81 +0.1 468,503 + DDA3937_RS02090 0.82 -0.3 468,503 + DDA3937_RS02090 0.82 -1.6 468,503 + DDA3937_RS02090 0.82 +0.9 468,504 - DDA3937_RS02090 0.82 +1.1 468,504 - DDA3937_RS02090 0.82 -0.1 468,504 - DDA3937_RS02090 0.82 +2.9 468,504 - DDA3937_RS02090 0.82 -0.8 468,504 - DDA3937_RS02090 0.82 -0.3 468,576 - +0.3 468,619 + +0.7 468,620 - +0.1 468,620 - +0.1 468,663 - -0.7 468,664 + +0.2 468,664 + -0.2 468,664 + -1.0 468,664 + +0.6 468,664 + +1.8 468,664 + -0.3 468,664 + -1.6 468,664 + -2.5 468,664 + -0.4 468,664 + -2.2 468,664 + -0.2 468,664 + -0.2 468,664 + -0.1 468,664 + +0.1 468,665 - -1.3 468,665 - -1.8 468,665 - -0.8 468,665 - -0.5 468,665 - -0.8 468,665 - +3.9 468,665 - +0.2 468,711 + -0.6 468,752 + +0.3 468,752 + -1.2 468,752 + -1.2 468,752 + -0.4 468,753 - -0.4 468,753 - +2.1 468,753 - -1.1 468,764 + -0.2 468,764 + -2.6 468,765 - +1.5 468,765 - -1.9 468,765 - -1.2 468,765 - +0.3 468,765 - +0.4 468,765 - +0.3 468,793 - DDA3937_RS02095 0.11 -0.8 468,794 + DDA3937_RS02095 0.11 -0.0 468,794 + DDA3937_RS02095 0.11 -0.4 468,795 - DDA3937_RS02095 0.11 -0.6 468,795 - DDA3937_RS02095 0.11 -0.4 468,795 - DDA3937_RS02095 0.11 -1.4 468,795 - DDA3937_RS02095 0.11 +0.2 468,795 - DDA3937_RS02095 0.11 -0.2 468,795 - DDA3937_RS02095 0.11 +0.7 468,833 + DDA3937_RS02095 0.21 -0.5 468,833 + DDA3937_RS02095 0.21 +0.2 468,833 + +3.0 468,854 + DDA3937_RS02095 0.27 +0.6 468,854 + DDA3937_RS02095 0.27 -1.5 468,855 - DDA3937_RS02095 0.27 -0.2 468,855 - DDA3937_RS02095 0.27 +1.6 468,890 + DDA3937_RS02095 0.37 -1.4 468,890 + DDA3937_RS02095 0.37 +0.4 468,891 - DDA3937_RS02095 0.37 -1.3 468,891 - DDA3937_RS02095 0.37 -0.4 468,893 + DDA3937_RS02095 0.37 -0.3 468,894 - DDA3937_RS02095 0.38 -1.4 468,900 - DDA3937_RS02095 0.39 +0.5 468,900 - DDA3937_RS02095 0.39 -0.7 468,928 + DDA3937_RS02095 0.47 -0.4 468,929 - DDA3937_RS02095 0.47 +2.2 468,932 + DDA3937_RS02095 0.48 -0.8 468,932 + DDA3937_RS02095 0.48 +1.2 468,933 - DDA3937_RS02095 0.48 +0.1 468,933 - DDA3937_RS02095 0.48 -0.4 468,933 - DDA3937_RS02095 0.48 +2.0 468,933 - DDA3937_RS02095 0.48 +0.9 468,933 - DDA3937_RS02095 0.48 -0.6 468,933 - DDA3937_RS02095 0.48 -0.9 468,933 - DDA3937_RS02095 0.48 +0.1 468,963 + DDA3937_RS02095 0.56 -0.4 468,963 + DDA3937_RS02095 0.56 -2.6 468,963 + DDA3937_RS02095 0.56 -0.3 468,964 - DDA3937_RS02095 0.56 +0.2 469,027 + DDA3937_RS02095 0.73 +1.0 469,065 + DDA3937_RS02095 0.83 -2.4 469,066 - DDA3937_RS02095 0.83 -0.7 469,066 - DDA3937_RS02095 0.83 -0.2 469,066 - DDA3937_RS02095 0.83 -0.9 469,066 - DDA3937_RS02095 0.83 -1.1 469,066 - DDA3937_RS02095 0.83 -0.6 469,066 - DDA3937_RS02095 0.83 -0.2 469,066 - DDA3937_RS02095 0.83 -0.3 469,075 + DDA3937_RS02095 0.86 -0.3 469,076 - DDA3937_RS02095 0.86 -1.3 469,100 + -1.3 469,101 - -1.4 469,126 - +0.3 469,222 + DDA3937_RS02100 0.22 +1.0 469,289 + DDA3937_RS02100 0.38 -0.3 469,289 + DDA3937_RS02100 0.38 -0.8 469,304 + DDA3937_RS02100 0.41 -0.0 469,304 + DDA3937_RS02100 0.41 +0.6 469,304 + DDA3937_RS02100 0.41 -0.1 469,304 + DDA3937_RS02100 0.41 +0.3 469,305 - DDA3937_RS02100 0.41 +2.0 469,305 - DDA3937_RS02100 0.41 +0.8 469,305 - DDA3937_RS02100 0.41 -1.1 469,305 - DDA3937_RS02100 0.41 -0.7 469,341 - DDA3937_RS02100 0.50 -1.0 469,341 - DDA3937_RS02100 0.50 +2.0 469,386 - +2.4 469,386 - DDA3937_RS02100 0.61 -1.1 469,407 + DDA3937_RS02100 0.65 -0.3 469,427 + DDA3937_RS02100 0.70 -1.4 469,427 + DDA3937_RS02100 0.70 -1.7 469,427 + DDA3937_RS02100 0.70 -0.1 469,437 - DDA3937_RS02100 0.73 -0.3 469,437 - DDA3937_RS02100 0.73 -0.2 469,437 - DDA3937_RS02100 0.73 -1.1 469,479 + DDA3937_RS02100 0.83 +0.6 469,480 - DDA3937_RS02100 0.83 +1.1 469,494 + DDA3937_RS02100 0.86 +2.6 469,494 + DDA3937_RS02100 0.86 -0.0 469,679 + +2.7 469,684 + -0.7 469,685 - +0.7 469,685 - +0.4 469,689 - +0.5 469,689 - -1.4 469,694 - -0.6 469,729 + DDA3937_RS22985 0.11 +0.3 469,729 + DDA3937_RS22985 0.11 -1.1 469,729 + DDA3937_RS22985 0.11 -0.3 469,729 + DDA3937_RS22985 0.11 +0.5 469,730 - DDA3937_RS22985 0.11 +0.8 469,730 - DDA3937_RS22985 0.11 -0.0 469,732 - DDA3937_RS22985 0.12 -0.6 469,732 - DDA3937_RS22985 0.12 -2.5 469,733 + DDA3937_RS22985 0.12 +1.5 469,819 - DDA3937_RS22985 0.33 -0.1 469,877 - DDA3937_RS22985 0.47 -0.7 469,877 - DDA3937_RS22985 0.47 +0.0 469,909 - DDA3937_RS22985 0.55 -0.9 469,927 + DDA3937_RS22985 0.59 -0.3 469,995 - DDA3937_RS22985 0.76 +2.4 470,058 + +0.7 470,059 - -0.1 470,059 - -0.3 470,059 - +0.0 470,059 - -2.5 470,062 + +0.6 470,063 - -1.2 470,063 - +0.1 470,063 - -1.6 470,068 + +0.2 470,121 - +0.9 470,168 + DDA3937_RS02105 0.23 -0.7 470,168 + DDA3937_RS02105 0.23 -1.5 470,168 + DDA3937_RS02105 0.23 -1.3 470,169 - DDA3937_RS02105 0.23 +0.6 470,171 - DDA3937_RS02105 0.24 -1.4 470,212 + DDA3937_RS02105 0.35 -1.2 470,223 - DDA3937_RS02105 0.38 -0.9 470,296 + DDA3937_RS02105 0.59 +3.5 470,297 - DDA3937_RS02105 0.59 +1.3 470,322 + DDA3937_RS02105 0.66 -1.8 470,323 - DDA3937_RS02105 0.67 -0.6 470,396 - DDA3937_RS02105 0.87 +1.5 470,438 + -0.6 470,456 - +0.2 470,457 + -1.6 470,457 + -0.0 470,457 + -1.1 470,457 + -1.2 470,458 - -2.2 470,458 - +2.3 470,516 + +1.0 470,516 + -0.5 470,516 + -0.2 470,516 + +0.5 470,516 + +0.0 470,517 - +0.4 470,517 - -0.6 470,517 - -0.7 470,518 + +0.2 470,518 + +0.2 470,518 + +0.9 470,519 - +0.5 470,519 - -0.3 470,519 - -0.7 470,519 - -2.1 470,519 - -0.2 470,519 - +0.8 470,519 - -1.8
Or see this region's nucleotide sequence