Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01710

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01695 and DDA3937_RS01700 are separated by 10 nucleotidesDDA3937_RS01700 and DDA3937_RS01705 are separated by 37 nucleotidesDDA3937_RS01705 and DDA3937_RS01710 overlap by 4 nucleotidesDDA3937_RS01710 and DDA3937_RS01715 are separated by 59 nucleotides DDA3937_RS01695: DDA3937_RS01695 - divisome-associated lipoprotein YraP, at 376,127 to 376,702 _RS01695 DDA3937_RS01700: DDA3937_RS01700 - DnaA initiator-associating protein DiaA, at 376,713 to 377,303 _RS01700 DDA3937_RS01705: DDA3937_RS01705 - YraN family protein, at 377,341 to 377,697 _RS01705 DDA3937_RS01710: DDA3937_RS01710 - penicillin-binding protein activator, at 377,694 to 379,745 _RS01710 DDA3937_RS01715: DDA3937_RS01715 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 379,805 to 380,674 _RS01715 Position (kb) 377 378 379 380Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 376.714 kb on + strandat 376.715 kb on - strandat 376.742 kb on + strandat 376.779 kb on - strand, within DDA3937_RS01700at 376.779 kb on - strand, within DDA3937_RS01700at 376.779 kb on - strand, within DDA3937_RS01700at 376.779 kb on - strand, within DDA3937_RS01700at 376.779 kb on - strand, within DDA3937_RS01700at 376.870 kb on + strand, within DDA3937_RS01700at 376.871 kb on - strand, within DDA3937_RS01700at 377.008 kb on + strand, within DDA3937_RS01700at 377.008 kb on + strand, within DDA3937_RS01700at 377.011 kb on - strand, within DDA3937_RS01700at 377.066 kb on + strand, within DDA3937_RS01700at 377.067 kb on - strand, within DDA3937_RS01700at 377.111 kb on + strand, within DDA3937_RS01700at 377.153 kb on + strand, within DDA3937_RS01700at 377.153 kb on + strand, within DDA3937_RS01700at 377.154 kb on - strand, within DDA3937_RS01700at 377.253 kb on + strandat 377.288 kb on + strandat 377.402 kb on - strand, within DDA3937_RS01705at 377.500 kb on - strand, within DDA3937_RS01705at 377.500 kb on - strand, within DDA3937_RS01705at 377.578 kb on - strand, within DDA3937_RS01705at 377.669 kb on + strandat 377.884 kb on + strandat 378.010 kb on + strand, within DDA3937_RS01710at 378.010 kb on + strand, within DDA3937_RS01710at 378.107 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.110 kb on + strand, within DDA3937_RS01710at 378.111 kb on - strand, within DDA3937_RS01710at 378.112 kb on + strand, within DDA3937_RS01710at 378.112 kb on + strand, within DDA3937_RS01710at 378.112 kb on + strand, within DDA3937_RS01710at 378.113 kb on - strand, within DDA3937_RS01710at 378.113 kb on - strand, within DDA3937_RS01710at 378.113 kb on - strand, within DDA3937_RS01710at 378.113 kb on - strand, within DDA3937_RS01710at 378.283 kb on + strand, within DDA3937_RS01710at 378.283 kb on + strand, within DDA3937_RS01710at 378.283 kb on + strand, within DDA3937_RS01710at 378.284 kb on - strand, within DDA3937_RS01710at 378.284 kb on - strand, within DDA3937_RS01710at 378.284 kb on - strand, within DDA3937_RS01710at 378.284 kb on - strand, within DDA3937_RS01710at 378.407 kb on + strand, within DDA3937_RS01710at 378.469 kb on + strand, within DDA3937_RS01710at 378.470 kb on - strand, within DDA3937_RS01710at 378.470 kb on - strand, within DDA3937_RS01710at 378.476 kb on + strand, within DDA3937_RS01710at 378.476 kb on + strand, within DDA3937_RS01710at 378.477 kb on - strand, within DDA3937_RS01710at 378.477 kb on - strand, within DDA3937_RS01710at 378.477 kb on - strand, within DDA3937_RS01710at 378.477 kb on - strand, within DDA3937_RS01710at 378.485 kb on + strand, within DDA3937_RS01710at 378.638 kb on + strand, within DDA3937_RS01710at 378.639 kb on - strand, within DDA3937_RS01710at 378.639 kb on - strand, within DDA3937_RS01710at 378.668 kb on + strand, within DDA3937_RS01710at 378.761 kb on + strand, within DDA3937_RS01710at 379.066 kb on - strand, within DDA3937_RS01710at 379.142 kb on + strand, within DDA3937_RS01710at 379.143 kb on - strand, within DDA3937_RS01710at 379.143 kb on - strand, within DDA3937_RS01710at 379.143 kb on - strand, within DDA3937_RS01710at 379.143 kb on - strand, within DDA3937_RS01710at 379.267 kb on + strand, within DDA3937_RS01710at 379.267 kb on + strand, within DDA3937_RS01710at 379.267 kb on + strand, within DDA3937_RS01710at 379.268 kb on - strand, within DDA3937_RS01710at 379.268 kb on - strand, within DDA3937_RS01710at 379.268 kb on - strand, within DDA3937_RS01710at 379.268 kb on - strand, within DDA3937_RS01710at 379.268 kb on - strand, within DDA3937_RS01710at 379.324 kb on + strand, within DDA3937_RS01710at 379.324 kb on + strand, within DDA3937_RS01710at 379.324 kb on + strand, within DDA3937_RS01710at 379.325 kb on - strand, within DDA3937_RS01710at 379.327 kb on + strand, within DDA3937_RS01710at 379.327 kb on + strand, within DDA3937_RS01710at 379.328 kb on - strand, within DDA3937_RS01710at 379.328 kb on - strand, within DDA3937_RS01710at 379.328 kb on - strand, within DDA3937_RS01710at 379.379 kb on + strand, within DDA3937_RS01710at 379.539 kb on + strand, within DDA3937_RS01710at 379.540 kb on - strandat 379.540 kb on - strandat 379.540 kb on - strandat 379.540 kb on - strandat 379.559 kb on + strandat 379.559 kb on + strandat 379.559 kb on + strandat 379.560 kb on - strandat 379.592 kb on - strandat 379.594 kb on + strandat 379.595 kb on - strandat 379.623 kb on + strandat 379.623 kb on + strandat 379.623 kb on + strandat 379.623 kb on + strandat 379.623 kb on + strandat 379.624 kb on - strandat 379.722 kb on - strandat 379.745 kb on + strandat 379.745 kb on + strandat 379.745 kb on + strandat 379.745 kb on + strandat 379.745 kb on + strandat 379.746 kb on - strandat 379.746 kb on - strandat 379.746 kb on - strandat 379.746 kb on - strandat 379.746 kb on - strandat 379.750 kb on + strandat 379.750 kb on + strandat 379.751 kb on - strandat 379.751 kb on - strandat 379.779 kb on - strandat 379.781 kb on + strandat 379.847 kb on + strandat 379.847 kb on + strandat 379.847 kb on + strandat 379.848 kb on - strandat 379.848 kb on - strandat 379.924 kb on + strand, within DDA3937_RS01715at 379.924 kb on + strand, within DDA3937_RS01715at 379.925 kb on - strand, within DDA3937_RS01715at 379.939 kb on + strand, within DDA3937_RS01715at 379.939 kb on + strand, within DDA3937_RS01715at 379.939 kb on + strand, within DDA3937_RS01715at 379.956 kb on + strand, within DDA3937_RS01715at 379.956 kb on + strand, within DDA3937_RS01715at 379.957 kb on - strandat 379.963 kb on - strand, within DDA3937_RS01715at 379.978 kb on + strandat 379.978 kb on + strand, within DDA3937_RS01715at 379.978 kb on + strand, within DDA3937_RS01715at 379.978 kb on + strand, within DDA3937_RS01715at 379.979 kb on - strand, within DDA3937_RS01715at 379.979 kb on - strand, within DDA3937_RS01715at 380.225 kb on + strand, within DDA3937_RS01715at 380.226 kb on - strand, within DDA3937_RS01715at 380.226 kb on - strand, within DDA3937_RS01715at 380.226 kb on - strand, within DDA3937_RS01715at 380.261 kb on - strand, within DDA3937_RS01715at 380.266 kb on + strand, within DDA3937_RS01715at 380.267 kb on - strand, within DDA3937_RS01715at 380.375 kb on + strand, within DDA3937_RS01715at 380.375 kb on + strand, within DDA3937_RS01715at 380.375 kb on + strand, within DDA3937_RS01715at 380.421 kb on - strandat 380.421 kb on - strand, within DDA3937_RS01715at 380.636 kb on + strandat 380.672 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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376,714 + -0.6
376,715 - -0.1
376,742 + +0.4
376,779 - DDA3937_RS01700 0.11 +1.1
376,779 - DDA3937_RS01700 0.11 +0.2
376,779 - DDA3937_RS01700 0.11 +1.2
376,779 - DDA3937_RS01700 0.11 -0.1
376,779 - DDA3937_RS01700 0.11 -1.2
376,870 + DDA3937_RS01700 0.27 +2.1
376,871 - DDA3937_RS01700 0.27 +1.9
377,008 + DDA3937_RS01700 0.50 +0.8
377,008 + DDA3937_RS01700 0.50 -1.0
377,011 - DDA3937_RS01700 0.50 +0.1
377,066 + DDA3937_RS01700 0.60 +1.0
377,067 - DDA3937_RS01700 0.60 +2.2
377,111 + DDA3937_RS01700 0.67 +1.1
377,153 + DDA3937_RS01700 0.74 +0.3
377,153 + DDA3937_RS01700 0.74 +0.7
377,154 - DDA3937_RS01700 0.75 +0.9
377,253 + -0.6
377,288 + -0.9
377,402 - DDA3937_RS01705 0.17 -0.2
377,500 - DDA3937_RS01705 0.45 -0.3
377,500 - DDA3937_RS01705 0.45 +0.8
377,578 - DDA3937_RS01705 0.66 -0.6
377,669 + +0.6
377,884 + +1.8
378,010 + DDA3937_RS01710 0.15 +1.5
378,010 + DDA3937_RS01710 0.15 +2.4
378,107 + DDA3937_RS01710 0.20 +0.8
378,110 + DDA3937_RS01710 0.20 +0.5
378,110 + DDA3937_RS01710 0.20 +0.9
378,110 + DDA3937_RS01710 0.20 +1.1
378,110 + DDA3937_RS01710 0.20 +1.2
378,110 + DDA3937_RS01710 0.20 -0.6
378,110 + DDA3937_RS01710 0.20 +1.5
378,110 + DDA3937_RS01710 0.20 +0.4
378,110 + DDA3937_RS01710 0.20 -0.7
378,110 + DDA3937_RS01710 0.20 +0.2
378,110 + DDA3937_RS01710 0.20 +5.0
378,110 + DDA3937_RS01710 0.20 +1.0
378,111 - DDA3937_RS01710 0.20 +1.0
378,112 + DDA3937_RS01710 0.20 +0.7
378,112 + DDA3937_RS01710 0.20 +0.4
378,112 + DDA3937_RS01710 0.20 +1.0
378,113 - DDA3937_RS01710 0.20 +1.0
378,113 - DDA3937_RS01710 0.20 -1.6
378,113 - DDA3937_RS01710 0.20 +1.8
378,113 - DDA3937_RS01710 0.20 +0.3
378,283 + DDA3937_RS01710 0.29 -0.4
378,283 + DDA3937_RS01710 0.29 +1.6
378,283 + DDA3937_RS01710 0.29 +0.2
378,284 - DDA3937_RS01710 0.29 +0.4
378,284 - DDA3937_RS01710 0.29 +0.0
378,284 - DDA3937_RS01710 0.29 -0.4
378,284 - DDA3937_RS01710 0.29 +0.2
378,407 + DDA3937_RS01710 0.35 +0.4
378,469 + DDA3937_RS01710 0.38 +1.4
378,470 - DDA3937_RS01710 0.38 +0.6
378,470 - DDA3937_RS01710 0.38 +1.4
378,476 + DDA3937_RS01710 0.38 +0.2
378,476 + DDA3937_RS01710 0.38 +4.1
378,477 - DDA3937_RS01710 0.38 +0.0
378,477 - DDA3937_RS01710 0.38 +0.6
378,477 - DDA3937_RS01710 0.38 +0.4
378,477 - DDA3937_RS01710 0.38 +0.8
378,485 + DDA3937_RS01710 0.39 +0.5
378,638 + DDA3937_RS01710 0.46 -0.2
378,639 - DDA3937_RS01710 0.46 +0.2
378,639 - DDA3937_RS01710 0.46 -1.6
378,668 + DDA3937_RS01710 0.47 +0.7
378,761 + DDA3937_RS01710 0.52 +1.3
379,066 - DDA3937_RS01710 0.67 +0.3
379,142 + DDA3937_RS01710 0.71 +1.0
379,143 - DDA3937_RS01710 0.71 +0.7
379,143 - DDA3937_RS01710 0.71 +0.1
379,143 - DDA3937_RS01710 0.71 -0.8
379,143 - DDA3937_RS01710 0.71 -0.5
379,267 + DDA3937_RS01710 0.77 +1.0
379,267 + DDA3937_RS01710 0.77 +0.5
379,267 + DDA3937_RS01710 0.77 +1.3
379,268 - DDA3937_RS01710 0.77 -0.2
379,268 - DDA3937_RS01710 0.77 -0.0
379,268 - DDA3937_RS01710 0.77 +0.2
379,268 - DDA3937_RS01710 0.77 +1.6
379,268 - DDA3937_RS01710 0.77 +0.6
379,324 + DDA3937_RS01710 0.79 +1.1
379,324 + DDA3937_RS01710 0.79 +0.7
379,324 + DDA3937_RS01710 0.79 +0.9
379,325 - DDA3937_RS01710 0.79 -0.4
379,327 + DDA3937_RS01710 0.80 -0.2
379,327 + DDA3937_RS01710 0.80 +0.4
379,328 - DDA3937_RS01710 0.80 +0.6
379,328 - DDA3937_RS01710 0.80 +5.0
379,328 - DDA3937_RS01710 0.80 -1.3
379,379 + DDA3937_RS01710 0.82 +0.3
379,539 + DDA3937_RS01710 0.90 +1.2
379,540 - +0.5
379,540 - +0.6
379,540 - -0.6
379,540 - +1.4
379,559 + +0.2
379,559 + -1.6
379,559 + -1.3
379,560 - +1.2
379,592 - -1.4
379,594 + -0.4
379,595 - -0.2
379,623 + +2.7
379,623 + +1.8
379,623 + +0.6
379,623 + -0.0
379,623 + +0.6
379,624 - -0.8
379,722 - +1.4
379,745 + -0.0
379,745 + +0.1
379,745 + +1.5
379,745 + +0.7
379,745 + +0.5
379,746 - +0.9
379,746 - -0.7
379,746 - +0.2
379,746 - +0.0
379,746 - +0.6
379,750 + +1.9
379,750 + +0.8
379,751 - +0.4
379,751 - +1.0
379,779 - -2.4
379,781 + +1.4
379,847 + +0.2
379,847 + +0.3
379,847 + -1.2
379,848 - +0.7
379,848 - +0.7
379,924 + DDA3937_RS01715 0.14 -0.1
379,924 + DDA3937_RS01715 0.14 -1.9
379,925 - DDA3937_RS01715 0.14 -1.0
379,939 + DDA3937_RS01715 0.15 -0.7
379,939 + DDA3937_RS01715 0.15 -0.1
379,939 + DDA3937_RS01715 0.15 -0.8
379,956 + DDA3937_RS01715 0.17 +0.6
379,956 + DDA3937_RS01715 0.17 -0.1
379,957 - -0.9
379,963 - DDA3937_RS01715 0.18 -1.1
379,978 + +0.4
379,978 + DDA3937_RS01715 0.20 -0.5
379,978 + DDA3937_RS01715 0.20 -0.4
379,978 + DDA3937_RS01715 0.20 -1.2
379,979 - DDA3937_RS01715 0.20 -1.9
379,979 - DDA3937_RS01715 0.20 -0.6
380,225 + DDA3937_RS01715 0.48 -1.4
380,226 - DDA3937_RS01715 0.48 +1.0
380,226 - DDA3937_RS01715 0.48 -0.7
380,226 - DDA3937_RS01715 0.48 -3.0
380,261 - DDA3937_RS01715 0.52 +1.1
380,266 + DDA3937_RS01715 0.53 -1.5
380,267 - DDA3937_RS01715 0.53 -1.1
380,375 + DDA3937_RS01715 0.66 +0.9
380,375 + DDA3937_RS01715 0.66 -0.4
380,375 + DDA3937_RS01715 0.66 +0.1
380,421 - +0.1
380,421 - DDA3937_RS01715 0.71 -0.7
380,636 + -0.2
380,672 + -0.8

Or see this region's nucleotide sequence