Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01180 and DDA3937_RS01185 are separated by 103 nucleotides DDA3937_RS01185 and DDA3937_RS01190 are separated by 55 nucleotides DDA3937_RS01190 and DDA3937_RS01195 overlap by 1 nucleotides DDA3937_RS01195 and DDA3937_RS01200 are separated by 91 nucleotides
DDA3937_RS01180: DDA3937_RS01180 - Rsd/AlgQ family anti-sigma factor, at 269,940 to 270,389
_RS01180
DDA3937_RS01185: DDA3937_RS01185 - NAD(+) diphosphatase, at 270,493 to 271,266
_RS01185
DDA3937_RS01190: DDA3937_RS01190 - uroporphyrinogen decarboxylase, at 271,322 to 272,395
_RS01190
DDA3937_RS01195: DDA3937_RS01195 - deoxyribonuclease V, at 272,395 to 273,069
_RS01195
DDA3937_RS01200: DDA3937_RS01200 - YjaG family protein, at 273,161 to 273,751
_RS01200
Position (kb) 271
272
273 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 270.343 kb on + strand, within DDA3937_RS01180 at 270.343 kb on + strand, within DDA3937_RS01180 at 270.344 kb on - strand, within DDA3937_RS01180 at 270.344 kb on - strand, within DDA3937_RS01180 at 270.344 kb on - strand, within DDA3937_RS01180 at 270.344 kb on - strand, within DDA3937_RS01180 at 270.375 kb on + strand at 270.375 kb on + strand at 270.376 kb on - strand at 270.409 kb on + strand at 270.409 kb on + strand at 270.409 kb on + strand at 270.409 kb on + strand at 270.430 kb on + strand at 270.430 kb on + strand at 270.431 kb on - strand at 270.431 kb on - strand at 270.436 kb on + strand at 270.437 kb on - strand at 270.442 kb on + strand at 270.448 kb on + strand at 270.448 kb on + strand at 270.454 kb on + strand at 270.454 kb on + strand at 270.454 kb on + strand at 270.454 kb on + strand at 270.455 kb on - strand at 270.474 kb on - strand at 270.538 kb on + strand at 270.538 kb on + strand at 270.538 kb on + strand at 270.539 kb on - strand at 270.791 kb on - strand, within DDA3937_RS01185 at 270.816 kb on + strand, within DDA3937_RS01185 at 270.816 kb on + strand, within DDA3937_RS01185 at 270.817 kb on - strand, within DDA3937_RS01185 at 270.859 kb on + strand, within DDA3937_RS01185 at 270.859 kb on + strand, within DDA3937_RS01185 at 270.859 kb on + strand, within DDA3937_RS01185 at 270.860 kb on - strand, within DDA3937_RS01185 at 270.860 kb on - strand, within DDA3937_RS01185 at 270.863 kb on - strand, within DDA3937_RS01185 at 270.952 kb on + strand, within DDA3937_RS01185 at 270.952 kb on + strand, within DDA3937_RS01185 at 270.952 kb on + strand, within DDA3937_RS01185 at 270.952 kb on + strand, within DDA3937_RS01185 at 270.952 kb on + strand, within DDA3937_RS01185 at 270.952 kb on + strand, within DDA3937_RS01185 at 270.952 kb on + strand, within DDA3937_RS01185 at 270.952 kb on + strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 271.054 kb on + strand, within DDA3937_RS01185 at 271.054 kb on + strand, within DDA3937_RS01185 at 271.054 kb on + strand, within DDA3937_RS01185 at 271.055 kb on - strand, within DDA3937_RS01185 at 271.174 kb on + strand, within DDA3937_RS01185 at 271.238 kb on + strand at 271.238 kb on + strand at 271.238 kb on + strand at 271.239 kb on - strand at 271.239 kb on - strand at 271.241 kb on + strand at 271.241 kb on + strand at 271.242 kb on - strand at 271.242 kb on - strand at 271.307 kb on + strand at 272.400 kb on + strand at 272.578 kb on + strand, within DDA3937_RS01195 at 272.601 kb on + strand, within DDA3937_RS01195 at 272.601 kb on + strand, within DDA3937_RS01195 at 272.602 kb on - strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.613 kb on + strand, within DDA3937_RS01195 at 272.613 kb on + strand, within DDA3937_RS01195 at 272.715 kb on - strand, within DDA3937_RS01195 at 272.715 kb on - strand, within DDA3937_RS01195 at 272.756 kb on + strand, within DDA3937_RS01195 at 272.756 kb on + strand, within DDA3937_RS01195 at 273.067 kb on + strand at 273.068 kb on - strand at 273.068 kb on - strand at 273.072 kb on + strand at 273.073 kb on - strand at 273.104 kb on + strand at 273.104 kb on + strand at 273.105 kb on - strand at 273.105 kb on - strand at 273.105 kb on - strand at 273.106 kb on + strand at 273.107 kb on - strand at 273.144 kb on + strand at 273.144 kb on + strand at 273.145 kb on - strand at 273.145 kb on - strand at 273.145 kb on - strand at 273.145 kb on - strand at 273.147 kb on + strand at 273.147 kb on + strand at 273.148 kb on - strand at 273.155 kb on + strand at 273.165 kb on + strand at 273.166 kb on - strand at 273.170 kb on - strand at 273.217 kb on + strand at 273.217 kb on + strand at 273.218 kb on - strand at 273.218 kb on - strand at 273.218 kb on - strand at 273.223 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.258 kb on - strand, within DDA3937_RS01200 at 273.258 kb on - strand, within DDA3937_RS01200 at 273.258 kb on - strand, within DDA3937_RS01200
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 270,343 + DDA3937_RS01180 0.90 -0.5 270,343 + DDA3937_RS01180 0.90 -0.4 270,344 - DDA3937_RS01180 0.90 -1.6 270,344 - DDA3937_RS01180 0.90 +0.6 270,344 - DDA3937_RS01180 0.90 -1.0 270,344 - DDA3937_RS01180 0.90 +0.1 270,375 + +0.7 270,375 + -0.7 270,376 - -1.6 270,409 + -0.9 270,409 + +2.1 270,409 + -0.6 270,409 + +0.7 270,430 + +0.0 270,430 + -0.7 270,431 - -0.2 270,431 - -0.7 270,436 + -0.1 270,437 - +0.4 270,442 + +0.2 270,448 + +0.4 270,448 + +0.3 270,454 + -1.5 270,454 + -0.6 270,454 + -0.4 270,454 + -1.7 270,455 - -0.4 270,474 - -0.3 270,538 + -0.2 270,538 + +1.4 270,538 + -0.4 270,539 - +0.0 270,791 - DDA3937_RS01185 0.39 +4.3 270,816 + DDA3937_RS01185 0.42 -0.5 270,816 + DDA3937_RS01185 0.42 -0.4 270,817 - DDA3937_RS01185 0.42 +0.2 270,859 + DDA3937_RS01185 0.47 -0.0 270,859 + DDA3937_RS01185 0.47 -1.5 270,859 + DDA3937_RS01185 0.47 +0.6 270,860 - DDA3937_RS01185 0.47 +1.3 270,860 - DDA3937_RS01185 0.47 +0.2 270,863 - DDA3937_RS01185 0.48 +0.4 270,952 + DDA3937_RS01185 0.59 -0.7 270,952 + DDA3937_RS01185 0.59 -0.4 270,952 + DDA3937_RS01185 0.59 -1.7 270,952 + DDA3937_RS01185 0.59 -0.2 270,952 + DDA3937_RS01185 0.59 -0.3 270,952 + DDA3937_RS01185 0.59 -0.9 270,952 + DDA3937_RS01185 0.59 -0.9 270,952 + DDA3937_RS01185 0.59 +1.3 270,953 - DDA3937_RS01185 0.59 -0.2 270,953 - DDA3937_RS01185 0.59 -0.5 270,953 - DDA3937_RS01185 0.59 -1.7 270,953 - DDA3937_RS01185 0.59 +0.3 270,953 - DDA3937_RS01185 0.59 +1.7 270,953 - DDA3937_RS01185 0.59 -1.4 270,953 - DDA3937_RS01185 0.59 -0.2 270,953 - DDA3937_RS01185 0.59 -0.2 270,953 - DDA3937_RS01185 0.59 -0.3 271,054 + DDA3937_RS01185 0.72 -0.0 271,054 + DDA3937_RS01185 0.72 +1.3 271,054 + DDA3937_RS01185 0.72 -0.4 271,055 - DDA3937_RS01185 0.73 +1.3 271,174 + DDA3937_RS01185 0.88 -0.3 271,238 + +1.7 271,238 + -2.1 271,238 + +2.4 271,239 - -0.6 271,239 - +1.0 271,241 + -1.0 271,241 + -0.6 271,242 - -0.0 271,242 - +0.4 271,307 + +0.0 272,400 + +0.3 272,578 + DDA3937_RS01195 0.27 -0.5 272,601 + DDA3937_RS01195 0.31 +1.4 272,601 + DDA3937_RS01195 0.31 -1.3 272,602 - DDA3937_RS01195 0.31 +1.5 272,611 + DDA3937_RS01195 0.32 +0.4 272,611 + DDA3937_RS01195 0.32 -1.8 272,611 + DDA3937_RS01195 0.32 -2.0 272,611 + DDA3937_RS01195 0.32 -0.2 272,611 + DDA3937_RS01195 0.32 -1.7 272,611 + DDA3937_RS01195 0.32 +0.3 272,611 + DDA3937_RS01195 0.32 +0.1 272,611 + DDA3937_RS01195 0.32 -0.0 272,611 + DDA3937_RS01195 0.32 -1.2 272,611 + DDA3937_RS01195 0.32 +0.8 272,611 + +0.8 272,612 - DDA3937_RS01195 0.32 -0.7 272,612 - DDA3937_RS01195 0.32 -0.2 272,612 - DDA3937_RS01195 0.32 +0.3 272,612 - DDA3937_RS01195 0.32 +0.3 272,612 - DDA3937_RS01195 0.32 -0.9 272,612 - DDA3937_RS01195 0.32 +0.2 272,612 - DDA3937_RS01195 0.32 +0.6 272,612 - DDA3937_RS01195 0.32 -0.3 272,613 + DDA3937_RS01195 0.32 -0.3 272,613 + DDA3937_RS01195 0.32 +1.1 272,715 - DDA3937_RS01195 0.47 +0.1 272,715 - DDA3937_RS01195 0.47 -1.4 272,756 + DDA3937_RS01195 0.53 -0.5 272,756 + DDA3937_RS01195 0.53 +0.2 273,067 + -0.3 273,068 - -0.0 273,068 - +0.5 273,072 + +0.7 273,073 - -1.6 273,104 + +1.0 273,104 + -0.0 273,105 - +0.1 273,105 - -0.4 273,105 - -0.4 273,106 + -1.3 273,107 - -0.5 273,144 + +0.4 273,144 + +0.2 273,145 - +1.3 273,145 - -0.1 273,145 - -0.6 273,145 - -1.0 273,147 + -1.4 273,147 + +1.6 273,148 - +1.9 273,155 + -0.5 273,165 + -2.4 273,166 - -0.3 273,170 - -0.2 273,217 + -0.5 273,217 + -1.0 273,218 - -0.4 273,218 - -0.2 273,218 - +2.1 273,223 + DDA3937_RS01200 0.10 +1.4 273,244 + DDA3937_RS01200 0.14 +4.3 273,244 + DDA3937_RS01200 0.14 -1.6 273,244 + DDA3937_RS01200 0.14 +0.6 273,244 + DDA3937_RS01200 0.14 -0.4 273,244 + DDA3937_RS01200 0.14 -0.7 273,244 + DDA3937_RS01200 0.14 -0.1 273,244 + DDA3937_RS01200 0.14 +2.4 273,244 + DDA3937_RS01200 0.14 -1.7 273,244 + DDA3937_RS01200 0.14 -0.1 273,244 + DDA3937_RS01200 0.14 -0.7 273,244 + DDA3937_RS01200 0.14 -3.9 273,244 + DDA3937_RS01200 0.14 -1.7 273,244 + DDA3937_RS01200 0.14 -0.7 273,244 + DDA3937_RS01200 0.14 -1.5 273,244 + DDA3937_RS01200 0.14 +0.3 273,244 + DDA3937_RS01200 0.14 +1.0 273,244 + DDA3937_RS01200 0.14 +0.2 273,244 + DDA3937_RS01200 0.14 +0.2 273,244 + DDA3937_RS01200 0.14 +0.8 273,244 + DDA3937_RS01200 0.14 -1.2 273,244 + DDA3937_RS01200 0.14 -1.2 273,244 + DDA3937_RS01200 0.14 +0.3 273,245 - DDA3937_RS01200 0.14 -0.4 273,245 - DDA3937_RS01200 0.14 -0.2 273,245 - +0.8 273,245 - DDA3937_RS01200 0.14 +3.2 273,245 - DDA3937_RS01200 0.14 +0.2 273,245 - DDA3937_RS01200 0.14 -0.1 273,245 - DDA3937_RS01200 0.14 -0.2 273,245 - DDA3937_RS01200 0.14 +1.8 273,245 - DDA3937_RS01200 0.14 +0.3 273,245 - DDA3937_RS01200 0.14 -1.9 273,245 - DDA3937_RS01200 0.14 -0.9 273,245 - DDA3937_RS01200 0.14 -0.7 273,245 - DDA3937_RS01200 0.14 +0.5 273,245 - DDA3937_RS01200 0.14 +0.6 273,257 + DDA3937_RS01200 0.16 -0.5 273,257 + DDA3937_RS01200 0.16 -1.4 273,257 + DDA3937_RS01200 0.16 -0.6 273,257 + DDA3937_RS01200 0.16 -0.2 273,257 + DDA3937_RS01200 0.16 +1.3 273,258 - DDA3937_RS01200 0.16 +0.3 273,258 - DDA3937_RS01200 0.16 +0.3 273,258 - DDA3937_RS01200 0.16 -0.9
Or see this region's nucleotide sequence