Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00920

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00915 and DDA3937_RS00920 are separated by 9 nucleotidesDDA3937_RS00920 and DDA3937_RS00925 are separated by 85 nucleotides DDA3937_RS00915: DDA3937_RS00915 - HslU--HslV peptidase ATPase subunit, at 209,945 to 211,276 _RS00915 DDA3937_RS00920: DDA3937_RS00920 - ATP-dependent protease subunit HslV, at 211,286 to 211,816 _RS00920 DDA3937_RS00925: DDA3937_RS00925 - cell division protein FtsN, at 211,902 to 212,831 _RS00925 Position (kb) 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 210.413 kb on - strand, within DDA3937_RS00915at 210.479 kb on - strand, within DDA3937_RS00915at 210.559 kb on + strand, within DDA3937_RS00915at 210.559 kb on + strand, within DDA3937_RS00915at 210.732 kb on - strand, within DDA3937_RS00915at 211.006 kb on - strand, within DDA3937_RS00915at 211.228 kb on + strandat 211.229 kb on - strandat 211.229 kb on - strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.234 kb on + strandat 211.234 kb on + strandat 211.234 kb on + strandat 211.234 kb on + strandat 211.235 kb on - strandat 211.235 kb on - strandat 211.235 kb on - strandat 211.235 kb on - strandat 211.250 kb on + strandat 211.250 kb on + strandat 211.276 kb on + strandat 211.276 kb on + strandat 211.276 kb on + strandat 211.277 kb on - strandat 211.277 kb on - strandat 211.287 kb on + strandat 211.288 kb on - strandat 211.302 kb on - strandat 211.332 kb on + strandat 211.332 kb on + strandat 211.332 kb on + strandat 211.333 kb on - strandat 211.333 kb on - strandat 211.343 kb on - strand, within DDA3937_RS00920at 211.343 kb on - strand, within DDA3937_RS00920at 211.388 kb on + strand, within DDA3937_RS00920at 211.701 kb on + strand, within DDA3937_RS00920at 211.701 kb on + strand, within DDA3937_RS00920at 211.702 kb on - strand, within DDA3937_RS00920at 211.736 kb on + strand, within DDA3937_RS00920at 211.797 kb on - strandat 211.803 kb on - strandat 211.803 kb on - strandat 211.867 kb on - strandat 211.876 kb on - strandat 211.991 kb on - strandat 212.226 kb on + strand, within DDA3937_RS00925at 212.273 kb on + strand, within DDA3937_RS00925at 212.274 kb on - strand, within DDA3937_RS00925at 212.274 kb on - strand, within DDA3937_RS00925at 212.333 kb on + strand, within DDA3937_RS00925at 212.387 kb on + strand, within DDA3937_RS00925at 212.416 kb on + strand, within DDA3937_RS00925at 212.416 kb on + strand, within DDA3937_RS00925at 212.416 kb on + strand, within DDA3937_RS00925at 212.416 kb on + strand, within DDA3937_RS00925at 212.417 kb on - strand, within DDA3937_RS00925at 212.417 kb on - strand, within DDA3937_RS00925at 212.417 kb on - strand, within DDA3937_RS00925at 212.417 kb on - strand, within DDA3937_RS00925at 212.417 kb on - strand, within DDA3937_RS00925at 212.496 kb on - strand, within DDA3937_RS00925at 212.496 kb on - strand, within DDA3937_RS00925at 212.816 kb on - strandat 212.816 kb on - strandat 212.816 kb on - strandat 212.816 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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210,413 - DDA3937_RS00915 0.35 -0.6
210,479 - DDA3937_RS00915 0.40 -0.7
210,559 + DDA3937_RS00915 0.46 -0.6
210,559 + DDA3937_RS00915 0.46 -1.6
210,732 - DDA3937_RS00915 0.59 -1.5
211,006 - DDA3937_RS00915 0.80 -1.1
211,228 + -0.6
211,229 - -1.2
211,229 - -1.4
211,230 + -0.9
211,230 + -0.2
211,230 + -0.6
211,230 + -0.0
211,230 + -0.0
211,230 + -0.6
211,230 + -0.6
211,230 + -1.2
211,230 + -0.4
211,230 + -0.9
211,230 + -0.2
211,230 + -0.4
211,230 + -1.6
211,230 + +0.8
211,230 + -1.7
211,230 + -0.5
211,231 - -3.2
211,231 - -0.6
211,231 - -2.3
211,231 - -1.0
211,231 - -0.4
211,231 - -0.7
211,231 - -1.0
211,231 - -0.6
211,231 - +0.7
211,231 - -1.7
211,231 - -1.9
211,231 - -0.6
211,231 - -1.3
211,234 + +0.9
211,234 + -2.0
211,234 + -1.1
211,234 + +0.0
211,235 - -2.6
211,235 - +1.0
211,235 - +3.0
211,235 - +1.4
211,250 + +0.1
211,250 + -0.9
211,276 + -0.4
211,276 + +2.0
211,276 + +0.1
211,277 - -1.7
211,277 - +1.2
211,287 + -0.6
211,288 - -1.7
211,302 - -0.7
211,332 + -1.2
211,332 + -2.4
211,332 + -0.4
211,333 - -0.0
211,333 - -0.4
211,343 - DDA3937_RS00920 0.11 -1.3
211,343 - DDA3937_RS00920 0.11 -1.6
211,388 + DDA3937_RS00920 0.19 -0.5
211,701 + DDA3937_RS00920 0.78 -1.3
211,701 + DDA3937_RS00920 0.78 +0.3
211,702 - DDA3937_RS00920 0.78 -0.9
211,736 + DDA3937_RS00920 0.85 -1.9
211,797 - -1.6
211,803 - +0.2
211,803 - -1.1
211,867 - -0.3
211,876 - +0.1
211,991 - -1.1
212,226 + DDA3937_RS00925 0.35 +0.1
212,273 + DDA3937_RS00925 0.40 +1.4
212,274 - DDA3937_RS00925 0.40 -1.9
212,274 - DDA3937_RS00925 0.40 -0.4
212,333 + DDA3937_RS00925 0.46 -1.1
212,387 + DDA3937_RS00925 0.52 -2.2
212,416 + DDA3937_RS00925 0.55 -0.9
212,416 + DDA3937_RS00925 0.55 +2.4
212,416 + DDA3937_RS00925 0.55 -0.8
212,416 + DDA3937_RS00925 0.55 -0.5
212,417 - DDA3937_RS00925 0.55 -0.1
212,417 - DDA3937_RS00925 0.55 -0.9
212,417 - DDA3937_RS00925 0.55 +1.4
212,417 - DDA3937_RS00925 0.55 -0.4
212,417 - DDA3937_RS00925 0.55 +1.4
212,496 - DDA3937_RS00925 0.64 -1.6
212,496 - DDA3937_RS00925 0.64 -0.2
212,816 - -2.3
212,816 - +1.4
212,816 - -2.0
212,816 - -0.2

Or see this region's nucleotide sequence