Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00690 and DDA3937_RS00695 are separated by 758 nucleotides DDA3937_RS00695 and DDA3937_RS00700 are separated by 98 nucleotides
DDA3937_RS00690: DDA3937_RS00690 - MCP four helix bundle domain-containing protein, at 158,331 to 159,968
_RS00690
DDA3937_RS00695: DDA3937_RS00695 - hypothetical protein, at 160,727 to 161,644
_RS00695
DDA3937_RS00700: DDA3937_RS00700 - MCP four helix bundle domain-containing protein, at 161,743 to 163,362
_RS00700
Position (kb) 160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 159.752 kb on + strand, within DDA3937_RS00690 at 159.752 kb on + strand, within DDA3937_RS00690 at 159.752 kb on + strand, within DDA3937_RS00690 at 159.753 kb on - strand, within DDA3937_RS00690 at 159.753 kb on - strand, within DDA3937_RS00690 at 159.753 kb on - strand, within DDA3937_RS00690 at 159.753 kb on - strand, within DDA3937_RS00690 at 159.753 kb on - strand, within DDA3937_RS00690 at 159.761 kb on + strand, within DDA3937_RS00690 at 159.776 kb on + strand, within DDA3937_RS00690 at 159.779 kb on + strand, within DDA3937_RS00690 at 159.779 kb on + strand, within DDA3937_RS00690 at 159.779 kb on + strand, within DDA3937_RS00690 at 159.780 kb on - strand, within DDA3937_RS00690 at 159.782 kb on + strand, within DDA3937_RS00690 at 159.783 kb on - strand, within DDA3937_RS00690 at 159.783 kb on - strand, within DDA3937_RS00690 at 159.783 kb on - strand, within DDA3937_RS00690 at 159.793 kb on + strand, within DDA3937_RS00690 at 159.793 kb on + strand, within DDA3937_RS00690 at 159.793 kb on + strand, within DDA3937_RS00690 at 159.794 kb on - strand, within DDA3937_RS00690 at 159.797 kb on + strand, within DDA3937_RS00690 at 159.797 kb on + strand, within DDA3937_RS00690 at 159.803 kb on + strand, within DDA3937_RS00690 at 159.804 kb on - strand, within DDA3937_RS00690 at 159.808 kb on - strand at 159.808 kb on - strand at 159.808 kb on - strand at 159.923 kb on + strand at 159.923 kb on + strand at 159.923 kb on + strand at 159.927 kb on - strand at 159.960 kb on + strand at 159.969 kb on - strand at 159.989 kb on - strand at 160.075 kb on + strand at 160.075 kb on + strand at 160.076 kb on - strand at 160.076 kb on - strand at 160.080 kb on - strand at 160.163 kb on - strand at 160.217 kb on + strand at 160.217 kb on + strand at 160.217 kb on + strand at 160.217 kb on + strand at 160.217 kb on + strand at 160.217 kb on + strand at 160.217 kb on + strand at 160.218 kb on - strand at 160.218 kb on - strand at 160.218 kb on - strand at 160.218 kb on - strand at 160.218 kb on - strand at 160.218 kb on - strand at 160.251 kb on + strand at 160.251 kb on + strand at 160.252 kb on - strand at 160.322 kb on + strand at 160.322 kb on + strand at 160.322 kb on + strand at 160.323 kb on - strand at 160.323 kb on - strand at 160.323 kb on - strand at 160.323 kb on - strand at 160.323 kb on - strand at 160.323 kb on - strand at 160.323 kb on - strand at 160.323 kb on - strand at 160.323 kb on - strand at 160.327 kb on + strand at 160.379 kb on + strand at 160.407 kb on + strand at 160.407 kb on + strand at 160.408 kb on - strand at 160.416 kb on + strand at 160.416 kb on + strand at 160.428 kb on + strand at 160.428 kb on + strand at 160.428 kb on + strand at 160.429 kb on - strand at 160.429 kb on - strand at 160.429 kb on - strand at 160.429 kb on - strand at 160.453 kb on + strand at 160.454 kb on - strand at 160.454 kb on - strand at 160.535 kb on + strand at 160.535 kb on + strand at 160.535 kb on + strand at 160.535 kb on + strand at 160.535 kb on + strand at 160.535 kb on + strand at 160.536 kb on - strand at 160.536 kb on - strand at 160.536 kb on - strand at 160.536 kb on - strand at 160.536 kb on - strand at 160.536 kb on - strand at 160.565 kb on + strand at 160.565 kb on + strand at 160.565 kb on + strand at 160.565 kb on + strand at 160.566 kb on - strand at 160.566 kb on - strand at 160.566 kb on - strand at 160.566 kb on - strand at 160.567 kb on + strand at 160.567 kb on + strand at 160.567 kb on + strand at 160.568 kb on - strand at 160.568 kb on - strand at 160.568 kb on - strand at 160.568 kb on - strand at 160.568 kb on - strand at 160.568 kb on - strand at 160.568 kb on - strand at 160.571 kb on + strand at 160.571 kb on + strand at 160.578 kb on + strand at 160.628 kb on + strand at 160.628 kb on + strand at 160.628 kb on + strand at 160.628 kb on + strand at 160.628 kb on + strand at 160.628 kb on + strand at 160.628 kb on + strand at 160.629 kb on - strand at 160.629 kb on - strand at 160.629 kb on - strand at 160.629 kb on - strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.665 kb on - strand at 160.765 kb on + strand at 160.765 kb on + strand at 160.894 kb on + strand, within DDA3937_RS00695 at 160.924 kb on + strand, within DDA3937_RS00695 at 160.924 kb on + strand, within DDA3937_RS00695 at 160.924 kb on + strand, within DDA3937_RS00695 at 160.924 kb on + strand, within DDA3937_RS00695 at 160.925 kb on - strand, within DDA3937_RS00695 at 160.946 kb on - strand, within DDA3937_RS00695 at 161.049 kb on + strand, within DDA3937_RS00695 at 161.371 kb on + strand, within DDA3937_RS00695 at 161.527 kb on + strand, within DDA3937_RS00695 at 161.617 kb on + strand at 161.726 kb on - strand at 161.739 kb on + strand at 161.739 kb on + strand at 161.740 kb on - strand at 161.815 kb on + strand at 162.399 kb on + strand, within DDA3937_RS00700
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 159,752 + DDA3937_RS00690 0.87 +2.7 159,752 + DDA3937_RS00690 0.87 -2.8 159,752 + DDA3937_RS00690 0.87 +0.1 159,753 - DDA3937_RS00690 0.87 +0.4 159,753 - DDA3937_RS00690 0.87 -0.9 159,753 - DDA3937_RS00690 0.87 +0.1 159,753 - DDA3937_RS00690 0.87 -0.0 159,753 - DDA3937_RS00690 0.87 -0.2 159,761 + DDA3937_RS00690 0.87 +0.1 159,776 + DDA3937_RS00690 0.88 -1.7 159,779 + DDA3937_RS00690 0.88 -1.6 159,779 + DDA3937_RS00690 0.88 -0.1 159,779 + DDA3937_RS00690 0.88 +1.0 159,780 - DDA3937_RS00690 0.88 -1.5 159,782 + DDA3937_RS00690 0.89 -0.6 159,783 - DDA3937_RS00690 0.89 +0.0 159,783 - DDA3937_RS00690 0.89 -0.4 159,783 - DDA3937_RS00690 0.89 +0.1 159,793 + DDA3937_RS00690 0.89 -0.1 159,793 + DDA3937_RS00690 0.89 +2.6 159,793 + DDA3937_RS00690 0.89 -0.3 159,794 - DDA3937_RS00690 0.89 -0.2 159,797 + DDA3937_RS00690 0.89 -0.3 159,797 + DDA3937_RS00690 0.89 -0.3 159,803 + DDA3937_RS00690 0.90 -1.4 159,804 - DDA3937_RS00690 0.90 +0.9 159,808 - -0.3 159,808 - +0.4 159,808 - +0.1 159,923 + +0.1 159,923 + +0.3 159,923 + +0.2 159,927 - -0.9 159,960 + +0.2 159,969 - -0.6 159,989 - -1.3 160,075 + +1.1 160,075 + -0.1 160,076 - +0.1 160,076 - +1.6 160,080 - -0.9 160,163 - -0.1 160,217 + +0.1 160,217 + +0.2 160,217 + -0.9 160,217 + -0.8 160,217 + +1.2 160,217 + +0.4 160,217 + +1.4 160,218 - +0.9 160,218 - -1.7 160,218 - -0.5 160,218 - -0.0 160,218 - -1.4 160,218 - +1.0 160,251 + +1.6 160,251 + +0.2 160,252 - -0.6 160,322 + -0.3 160,322 + -0.7 160,322 + -0.7 160,323 - +0.8 160,323 - +0.4 160,323 - -0.3 160,323 - -0.3 160,323 - -0.6 160,323 - +0.6 160,323 - -0.2 160,323 - -0.2 160,323 - +0.4 160,327 + -0.3 160,379 + +0.2 160,407 + -0.4 160,407 + +0.0 160,408 - +0.1 160,416 + -0.2 160,416 + -0.3 160,428 + -1.3 160,428 + -0.8 160,428 + +0.8 160,429 - -1.8 160,429 - -0.4 160,429 - +1.8 160,429 - -1.5 160,453 + +0.1 160,454 - +1.8 160,454 - -0.1 160,535 + -0.8 160,535 + +0.4 160,535 + -0.4 160,535 + +0.0 160,535 + -0.5 160,535 + +0.5 160,536 - +0.5 160,536 - +0.4 160,536 - -2.5 160,536 - +0.1 160,536 - -0.3 160,536 - -0.8 160,565 + -1.7 160,565 + -0.3 160,565 + -0.1 160,565 + -0.6 160,566 - +0.4 160,566 - +0.4 160,566 - -0.6 160,566 - -1.4 160,567 + +0.2 160,567 + +0.5 160,567 + -1.0 160,568 - -1.4 160,568 - -1.1 160,568 - +0.2 160,568 - -0.7 160,568 - +0.2 160,568 - -0.8 160,568 - +0.2 160,571 + -0.1 160,571 + +0.9 160,578 + -0.4 160,628 + -0.1 160,628 + -1.7 160,628 + -1.8 160,628 + -1.1 160,628 + -1.8 160,628 + -0.4 160,628 + +0.0 160,629 - +0.5 160,629 - +0.3 160,629 - -0.1 160,629 - -1.2 160,630 + -0.1 160,630 + +1.0 160,630 + -1.0 160,630 + +0.4 160,631 - +0.3 160,631 - -0.4 160,631 - -0.7 160,631 - +0.4 160,631 - +0.2 160,631 - +0.9 160,665 - -0.7 160,765 + +0.1 160,765 + +1.3 160,894 + DDA3937_RS00695 0.18 +0.3 160,924 + DDA3937_RS00695 0.21 +0.2 160,924 + DDA3937_RS00695 0.21 +2.8 160,924 + DDA3937_RS00695 0.21 -1.7 160,924 + DDA3937_RS00695 0.21 +0.3 160,925 - DDA3937_RS00695 0.22 -0.1 160,946 - DDA3937_RS00695 0.24 -0.6 161,049 + DDA3937_RS00695 0.35 -0.9 161,371 + DDA3937_RS00695 0.70 -0.1 161,527 + DDA3937_RS00695 0.87 +0.2 161,617 + -0.0 161,726 - -2.6 161,739 + +0.3 161,739 + -0.4 161,740 - -0.4 161,815 + -1.5 162,399 + DDA3937_RS00700 0.40 +0.2
Or see this region's nucleotide sequence