Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00510

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00500 and DDA3937_RS00505 are separated by 119 nucleotidesDDA3937_RS00505 and DDA3937_RS00510 are separated by 121 nucleotidesDDA3937_RS00510 and DDA3937_RS00515 are separated by 163 nucleotides DDA3937_RS00500: DDA3937_RS00500 - PLP-dependent aminotransferase family protein, at 116,276 to 117,709 _RS00500 DDA3937_RS00505: DDA3937_RS00505 - VOC family protein, at 117,829 to 118,200 _RS00505 DDA3937_RS00510: DDA3937_RS00510 - YafY family transcriptional regulator, at 118,322 to 119,023 _RS00510 DDA3937_RS00515: DDA3937_RS00515 - EamA family transporter, at 119,187 to 120,095 _RS00515 Position (kb) 118 119 120Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 117.422 kb on + strand, within DDA3937_RS00500at 117.422 kb on + strand, within DDA3937_RS00500at 117.422 kb on + strand, within DDA3937_RS00500at 117.422 kb on + strand, within DDA3937_RS00500at 117.422 kb on + strand, within DDA3937_RS00500at 117.423 kb on - strand, within DDA3937_RS00500at 117.423 kb on - strand, within DDA3937_RS00500at 117.747 kb on + strandat 117.748 kb on - strandat 117.748 kb on - strandat 117.748 kb on - strandat 117.886 kb on - strand, within DDA3937_RS00505at 117.891 kb on + strand, within DDA3937_RS00505at 117.891 kb on + strand, within DDA3937_RS00505at 117.891 kb on + strand, within DDA3937_RS00505at 117.891 kb on + strand, within DDA3937_RS00505at 117.891 kb on + strand, within DDA3937_RS00505at 117.891 kb on + strand, within DDA3937_RS00505at 117.892 kb on - strand, within DDA3937_RS00505at 117.892 kb on - strand, within DDA3937_RS00505at 117.892 kb on - strand, within DDA3937_RS00505at 117.892 kb on - strandat 117.893 kb on + strand, within DDA3937_RS00505at 117.893 kb on + strand, within DDA3937_RS00505at 117.893 kb on + strand, within DDA3937_RS00505at 117.894 kb on - strand, within DDA3937_RS00505at 117.894 kb on - strand, within DDA3937_RS00505at 117.956 kb on + strand, within DDA3937_RS00505at 117.957 kb on - strand, within DDA3937_RS00505at 118.140 kb on - strand, within DDA3937_RS00505at 118.172 kb on + strandat 118.172 kb on + strandat 118.173 kb on - strandat 118.184 kb on + strandat 118.184 kb on + strandat 118.185 kb on - strandat 118.287 kb on - strandat 118.287 kb on - strandat 118.292 kb on + strandat 118.292 kb on + strandat 118.292 kb on + strandat 118.292 kb on + strandat 118.293 kb on - strandat 118.297 kb on + strandat 118.297 kb on + strandat 118.298 kb on - strandat 118.298 kb on - strandat 118.298 kb on - strandat 118.298 kb on - strandat 118.298 kb on - strandat 118.298 kb on - strandat 118.561 kb on - strand, within DDA3937_RS00510at 118.848 kb on + strand, within DDA3937_RS00510at 118.848 kb on + strand, within DDA3937_RS00510at 118.849 kb on - strand, within DDA3937_RS00510at 118.849 kb on - strand, within DDA3937_RS00510at 118.849 kb on - strand, within DDA3937_RS00510at 118.912 kb on - strand, within DDA3937_RS00510at 118.912 kb on - strand, within DDA3937_RS00510at 118.912 kb on - strandat 118.985 kb on + strandat 118.986 kb on - strandat 119.040 kb on + strandat 119.060 kb on + strandat 119.060 kb on + strandat 119.060 kb on + strandat 119.060 kb on + strandat 119.061 kb on - strandat 119.061 kb on - strandat 119.079 kb on + strandat 119.094 kb on + strandat 119.095 kb on - strandat 119.095 kb on - strandat 119.095 kb on - strandat 119.095 kb on - strandat 119.095 kb on - strandat 119.098 kb on - strandat 119.151 kb on + strandat 119.151 kb on + strandat 119.152 kb on - strandat 119.172 kb on - strandat 119.172 kb on - strandat 119.194 kb on + strandat 119.195 kb on - strandat 119.273 kb on + strandat 119.274 kb on - strandat 119.376 kb on + strand, within DDA3937_RS00515at 119.672 kb on + strand, within DDA3937_RS00515at 119.672 kb on + strand, within DDA3937_RS00515at 119.672 kb on + strand, within DDA3937_RS00515at 119.829 kb on - strand, within DDA3937_RS00515at 119.842 kb on + strand, within DDA3937_RS00515at 119.842 kb on + strand, within DDA3937_RS00515at 119.842 kb on + strand, within DDA3937_RS00515at 119.843 kb on - strand, within DDA3937_RS00515at 119.847 kb on + strand, within DDA3937_RS00515at 119.847 kb on + strand, within DDA3937_RS00515at 119.847 kb on + strand, within DDA3937_RS00515at 119.847 kb on + strand, within DDA3937_RS00515at 119.847 kb on + strand, within DDA3937_RS00515at 119.848 kb on - strand, within DDA3937_RS00515at 119.848 kb on - strand, within DDA3937_RS00515at 119.848 kb on - strand, within DDA3937_RS00515at 119.848 kb on - strand, within DDA3937_RS00515at 119.848 kb on - strand, within DDA3937_RS00515at 119.848 kb on - strand, within DDA3937_RS00515at 119.848 kb on - strand, within DDA3937_RS00515at 119.848 kb on - strand, within DDA3937_RS00515at 119.848 kb on - strand, within DDA3937_RS00515at 119.858 kb on + strand, within DDA3937_RS00515at 119.858 kb on + strand, within DDA3937_RS00515at 120.022 kb on + strandat 120.022 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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117,422 + DDA3937_RS00500 0.80 +0.7
117,422 + DDA3937_RS00500 0.80 -0.9
117,422 + DDA3937_RS00500 0.80 -1.1
117,422 + DDA3937_RS00500 0.80 -0.7
117,422 + DDA3937_RS00500 0.80 -0.4
117,423 - DDA3937_RS00500 0.80 -0.0
117,423 - DDA3937_RS00500 0.80 +0.0
117,747 + -0.3
117,748 - +1.8
117,748 - -0.4
117,748 - -1.2
117,886 - DDA3937_RS00505 0.15 -1.4
117,891 + DDA3937_RS00505 0.17 -1.0
117,891 + DDA3937_RS00505 0.17 -0.6
117,891 + DDA3937_RS00505 0.17 +0.2
117,891 + DDA3937_RS00505 0.17 -1.2
117,891 + DDA3937_RS00505 0.17 +0.2
117,891 + DDA3937_RS00505 0.17 +2.6
117,892 - DDA3937_RS00505 0.17 +0.1
117,892 - DDA3937_RS00505 0.17 -1.2
117,892 - DDA3937_RS00505 0.17 -0.2
117,892 - +1.4
117,893 + DDA3937_RS00505 0.17 +0.8
117,893 + DDA3937_RS00505 0.17 -3.1
117,893 + DDA3937_RS00505 0.17 -0.4
117,894 - DDA3937_RS00505 0.17 -0.6
117,894 - DDA3937_RS00505 0.17 -0.7
117,956 + DDA3937_RS00505 0.34 +0.8
117,957 - DDA3937_RS00505 0.34 -0.1
118,140 - DDA3937_RS00505 0.84 -1.5
118,172 + +0.4
118,172 + +0.7
118,173 - -0.7
118,184 + +0.4
118,184 + -2.3
118,185 - -1.6
118,287 - -0.7
118,287 - -2.7
118,292 + -0.8
118,292 + -0.2
118,292 + -0.3
118,292 + -0.3
118,293 - +0.9
118,297 + -0.2
118,297 + +0.4
118,298 - +0.4
118,298 - +1.3
118,298 - +0.3
118,298 - -0.2
118,298 - +1.6
118,298 - -1.4
118,561 - DDA3937_RS00510 0.34 -0.9
118,848 + DDA3937_RS00510 0.75 -0.3
118,848 + DDA3937_RS00510 0.75 +0.2
118,849 - DDA3937_RS00510 0.75 -0.9
118,849 - DDA3937_RS00510 0.75 -0.6
118,849 - DDA3937_RS00510 0.75 +0.8
118,912 - DDA3937_RS00510 0.84 -2.0
118,912 - DDA3937_RS00510 0.84 -0.2
118,912 - -1.4
118,985 + +1.4
118,986 - -0.0
119,040 + -0.8
119,060 + -0.9
119,060 + +0.9
119,060 + +0.4
119,060 + +0.4
119,061 - +0.5
119,061 - +0.4
119,079 + -1.4
119,094 + -1.1
119,095 - -1.4
119,095 - +0.3
119,095 - +0.2
119,095 - -0.7
119,095 - +0.2
119,098 - +0.4
119,151 + -2.1
119,151 + +2.4
119,152 - +0.7
119,172 - +0.1
119,172 - +0.7
119,194 + -1.6
119,195 - -0.2
119,273 + +2.0
119,274 - -0.9
119,376 + DDA3937_RS00515 0.21 -1.4
119,672 + DDA3937_RS00515 0.53 +0.2
119,672 + DDA3937_RS00515 0.53 +1.1
119,672 + DDA3937_RS00515 0.53 -2.0
119,829 - DDA3937_RS00515 0.71 -0.9
119,842 + DDA3937_RS00515 0.72 -1.2
119,842 + DDA3937_RS00515 0.72 +0.8
119,842 + DDA3937_RS00515 0.72 +1.0
119,843 - DDA3937_RS00515 0.72 -0.8
119,847 + DDA3937_RS00515 0.73 -0.7
119,847 + DDA3937_RS00515 0.73 -1.8
119,847 + DDA3937_RS00515 0.73 -0.6
119,847 + DDA3937_RS00515 0.73 -1.3
119,847 + DDA3937_RS00515 0.73 +0.7
119,848 - DDA3937_RS00515 0.73 +0.2
119,848 - DDA3937_RS00515 0.73 -0.2
119,848 - DDA3937_RS00515 0.73 -0.2
119,848 - DDA3937_RS00515 0.73 -0.4
119,848 - DDA3937_RS00515 0.73 +0.6
119,848 - DDA3937_RS00515 0.73 -0.6
119,848 - DDA3937_RS00515 0.73 -0.6
119,848 - DDA3937_RS00515 0.73 +0.4
119,848 - DDA3937_RS00515 0.73 +0.1
119,858 + DDA3937_RS00515 0.74 -2.6
119,858 + DDA3937_RS00515 0.74 +2.7
120,022 + -2.3
120,022 + -1.2

Or see this region's nucleotide sequence