Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00410

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00400 and DDA3937_RS00405 are separated by 3 nucleotidesDDA3937_RS00405 and DDA3937_RS00410 are separated by 16 nucleotidesDDA3937_RS00410 and DDA3937_RS00415 are separated by 113 nucleotides DDA3937_RS00400: DDA3937_RS00400 - signal transduction protein, at 93,813 to 95,483 _RS00400 DDA3937_RS00405: DDA3937_RS00405 - dihydrodipicolinate synthase family protein, at 95,487 to 96,446 _RS00405 DDA3937_RS00410: DDA3937_RS00410 - exo-alpha-sialidase, at 96,463 to 97,509 _RS00410 DDA3937_RS00415: DDA3937_RS00415 - MHS family MFS transporter, at 97,623 to 98,972 _RS00415 Position (kb) 96 97 98Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 95.481 kb on + strandat 95.481 kb on + strandat 95.481 kb on + strandat 95.482 kb on - strandat 95.493 kb on + strandat 95.493 kb on + strandat 95.493 kb on + strandat 95.493 kb on + strandat 95.494 kb on - strandat 95.494 kb on - strandat 95.494 kb on - strandat 95.494 kb on - strandat 95.526 kb on + strandat 95.526 kb on + strandat 95.527 kb on - strandat 95.527 kb on - strandat 95.527 kb on - strandat 95.613 kb on + strand, within DDA3937_RS00405at 95.614 kb on - strand, within DDA3937_RS00405at 95.709 kb on - strand, within DDA3937_RS00405at 95.709 kb on - strand, within DDA3937_RS00405at 95.934 kb on + strand, within DDA3937_RS00405at 95.934 kb on + strand, within DDA3937_RS00405at 95.934 kb on + strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.935 kb on - strand, within DDA3937_RS00405at 95.947 kb on - strand, within DDA3937_RS00405at 95.952 kb on + strand, within DDA3937_RS00405at 96.006 kb on + strand, within DDA3937_RS00405at 96.144 kb on + strand, within DDA3937_RS00405at 96.145 kb on - strand, within DDA3937_RS00405at 96.180 kb on + strand, within DDA3937_RS00405at 96.181 kb on - strand, within DDA3937_RS00405at 96.181 kb on - strand, within DDA3937_RS00405at 96.181 kb on - strand, within DDA3937_RS00405at 96.181 kb on - strand, within DDA3937_RS00405at 96.181 kb on - strand, within DDA3937_RS00405at 96.297 kb on + strand, within DDA3937_RS00405at 96.298 kb on - strand, within DDA3937_RS00405at 96.298 kb on - strand, within DDA3937_RS00405at 96.298 kb on - strand, within DDA3937_RS00405at 96.298 kb on - strand, within DDA3937_RS00405at 96.298 kb on - strand, within DDA3937_RS00405at 96.314 kb on + strand, within DDA3937_RS00405at 96.315 kb on - strand, within DDA3937_RS00405at 96.514 kb on + strandat 96.514 kb on + strandat 96.515 kb on - strandat 96.515 kb on - strandat 96.515 kb on - strandat 96.515 kb on - strandat 96.515 kb on - strandat 96.515 kb on - strandat 96.736 kb on + strand, within DDA3937_RS00410at 96.736 kb on + strand, within DDA3937_RS00410at 96.736 kb on + strand, within DDA3937_RS00410at 96.736 kb on + strand, within DDA3937_RS00410at 96.736 kb on + strand, within DDA3937_RS00410at 96.736 kb on + strand, within DDA3937_RS00410at 96.736 kb on + strand, within DDA3937_RS00410at 96.737 kb on - strand, within DDA3937_RS00410at 96.737 kb on - strand, within DDA3937_RS00410at 96.738 kb on + strand, within DDA3937_RS00410at 97.219 kb on + strand, within DDA3937_RS00410at 97.219 kb on + strand, within DDA3937_RS00410at 97.219 kb on + strand, within DDA3937_RS00410at 97.219 kb on + strand, within DDA3937_RS00410at 97.295 kb on - strand, within DDA3937_RS00410at 97.311 kb on + strand, within DDA3937_RS00410at 97.425 kb on + strandat 97.426 kb on - strandat 97.445 kb on + strandat 97.445 kb on + strandat 97.445 kb on + strandat 97.445 kb on + strandat 97.445 kb on + strandat 97.445 kb on + strandat 97.445 kb on + strandat 97.446 kb on - strandat 97.446 kb on - strandat 97.446 kb on - strandat 97.446 kb on - strandat 97.456 kb on + strandat 97.456 kb on + strandat 97.457 kb on - strandat 97.483 kb on + strandat 97.507 kb on + strandat 97.516 kb on + strandat 97.516 kb on + strandat 97.516 kb on + strandat 97.517 kb on - strandat 97.517 kb on - strandat 97.536 kb on - strandat 97.540 kb on + strandat 97.540 kb on + strandat 97.540 kb on + strandat 97.541 kb on - strandat 97.541 kb on - strandat 97.541 kb on - strandat 97.541 kb on - strandat 97.541 kb on - strandat 97.607 kb on + strandat 97.643 kb on - strandat 97.643 kb on - strandat 97.667 kb on + strandat 97.667 kb on + strandat 97.668 kb on - strandat 97.740 kb on + strandat 97.835 kb on - strand, within DDA3937_RS00415at 97.835 kb on - strand, within DDA3937_RS00415at 97.899 kb on - strand, within DDA3937_RS00415at 97.899 kb on - strand, within DDA3937_RS00415at 97.928 kb on + strand, within DDA3937_RS00415at 97.968 kb on + strand, within DDA3937_RS00415at 97.969 kb on - strand, within DDA3937_RS00415at 97.969 kb on - strand, within DDA3937_RS00415at 97.969 kb on - strand, within DDA3937_RS00415at 97.969 kb on - strand, within DDA3937_RS00415at 97.969 kb on - strand, within DDA3937_RS00415at 98.008 kb on + strand, within DDA3937_RS00415at 98.009 kb on - strand, within DDA3937_RS00415at 98.256 kb on + strand, within DDA3937_RS00415at 98.256 kb on + strand, within DDA3937_RS00415at 98.256 kb on + strand, within DDA3937_RS00415at 98.256 kb on + strand, within DDA3937_RS00415at 98.256 kb on + strand, within DDA3937_RS00415at 98.256 kb on + strand, within DDA3937_RS00415at 98.256 kb on + strand, within DDA3937_RS00415at 98.256 kb on + strand, within DDA3937_RS00415at 98.256 kb on + strand, within DDA3937_RS00415at 98.256 kb on + strand, within DDA3937_RS00415at 98.256 kb on + strand, within DDA3937_RS00415at 98.256 kb on + strand, within DDA3937_RS00415at 98.256 kb on + strand, within DDA3937_RS00415at 98.256 kb on + strand, within DDA3937_RS00415at 98.256 kb on + strand, within DDA3937_RS00415at 98.257 kb on - strand, within DDA3937_RS00415at 98.257 kb on - strand, within DDA3937_RS00415at 98.257 kb on - strand, within DDA3937_RS00415at 98.257 kb on - strand, within DDA3937_RS00415at 98.257 kb on - strandat 98.257 kb on - strand, within DDA3937_RS00415at 98.257 kb on - strand, within DDA3937_RS00415at 98.257 kb on - strand, within DDA3937_RS00415at 98.257 kb on - strand, within DDA3937_RS00415at 98.257 kb on - strand, within DDA3937_RS00415at 98.257 kb on - strand, within DDA3937_RS00415at 98.257 kb on - strand, within DDA3937_RS00415at 98.257 kb on - strand, within DDA3937_RS00415at 98.257 kb on - strand, within DDA3937_RS00415at 98.257 kb on - strand, within DDA3937_RS00415at 98.257 kb on - strand, within DDA3937_RS00415at 98.257 kb on - strand, within DDA3937_RS00415at 98.257 kb on - strand, within DDA3937_RS00415at 98.258 kb on + strand, within DDA3937_RS00415at 98.259 kb on - strand, within DDA3937_RS00415at 98.259 kb on - strandat 98.473 kb on + strand, within DDA3937_RS00415at 98.474 kb on - strand, within DDA3937_RS00415at 98.474 kb on - strand, within DDA3937_RS00415at 98.474 kb on - strand, within DDA3937_RS00415at 98.504 kb on + strand, within DDA3937_RS00415at 98.504 kb on + strand, within DDA3937_RS00415at 98.505 kb on - strand, within DDA3937_RS00415at 98.505 kb on - strand, within DDA3937_RS00415

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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95,481 + -0.4
95,481 + +0.4
95,481 + -0.7
95,482 - -0.2
95,493 + -1.2
95,493 + -0.2
95,493 + +0.5
95,493 + +0.0
95,494 - -0.6
95,494 - +0.1
95,494 - +2.0
95,494 - -0.2
95,526 + -0.9
95,526 + -0.3
95,527 - -0.3
95,527 - -1.6
95,527 - -0.4
95,613 + DDA3937_RS00405 0.13 -0.3
95,614 - DDA3937_RS00405 0.13 +0.1
95,709 - DDA3937_RS00405 0.23 -0.1
95,709 - DDA3937_RS00405 0.23 +0.4
95,934 + DDA3937_RS00405 0.47 +0.1
95,934 + DDA3937_RS00405 0.47 +1.1
95,934 + DDA3937_RS00405 0.47 -0.2
95,935 - DDA3937_RS00405 0.47 -0.5
95,935 - DDA3937_RS00405 0.47 -1.2
95,935 - DDA3937_RS00405 0.47 +0.1
95,935 - DDA3937_RS00405 0.47 -1.7
95,935 - DDA3937_RS00405 0.47 +0.0
95,935 - DDA3937_RS00405 0.47 +1.0
95,935 - DDA3937_RS00405 0.47 +0.0
95,935 - DDA3937_RS00405 0.47 -0.5
95,935 - DDA3937_RS00405 0.47 -1.7
95,947 - DDA3937_RS00405 0.48 -0.3
95,952 + DDA3937_RS00405 0.48 +0.3
96,006 + DDA3937_RS00405 0.54 -0.2
96,144 + DDA3937_RS00405 0.68 +0.6
96,145 - DDA3937_RS00405 0.69 -1.1
96,180 + DDA3937_RS00405 0.72 -0.3
96,181 - DDA3937_RS00405 0.72 -1.1
96,181 - DDA3937_RS00405 0.72 -0.6
96,181 - DDA3937_RS00405 0.72 -0.2
96,181 - DDA3937_RS00405 0.72 +0.8
96,181 - DDA3937_RS00405 0.72 -0.7
96,297 + DDA3937_RS00405 0.84 -0.0
96,298 - DDA3937_RS00405 0.84 -0.4
96,298 - DDA3937_RS00405 0.84 -0.1
96,298 - DDA3937_RS00405 0.84 +0.1
96,298 - DDA3937_RS00405 0.84 +1.4
96,298 - DDA3937_RS00405 0.84 -0.3
96,314 + DDA3937_RS00405 0.86 +0.1
96,315 - DDA3937_RS00405 0.86 -1.3
96,514 + -1.0
96,514 + +1.8
96,515 - -1.2
96,515 - -0.4
96,515 - -0.2
96,515 - -0.6
96,515 - -1.2
96,515 - +0.4
96,736 + DDA3937_RS00410 0.26 -0.9
96,736 + DDA3937_RS00410 0.26 +1.7
96,736 + DDA3937_RS00410 0.26 +2.0
96,736 + DDA3937_RS00410 0.26 +2.3
96,736 + DDA3937_RS00410 0.26 -0.5
96,736 + DDA3937_RS00410 0.26 -0.7
96,736 + DDA3937_RS00410 0.26 +0.6
96,737 - DDA3937_RS00410 0.26 -0.0
96,737 - DDA3937_RS00410 0.26 -0.4
96,738 + DDA3937_RS00410 0.26 +0.3
97,219 + DDA3937_RS00410 0.72 +1.0
97,219 + DDA3937_RS00410 0.72 -0.9
97,219 + DDA3937_RS00410 0.72 +1.6
97,219 + DDA3937_RS00410 0.72 -1.9
97,295 - DDA3937_RS00410 0.79 +3.6
97,311 + DDA3937_RS00410 0.81 -0.6
97,425 + +4.6
97,426 - +0.7
97,445 + -0.9
97,445 + -2.8
97,445 + +1.4
97,445 + +0.3
97,445 + +0.8
97,445 + +1.2
97,445 + +0.4
97,446 - -1.6
97,446 - -0.2
97,446 - -2.8
97,446 - -0.4
97,456 + -0.3
97,456 + +1.8
97,457 - -1.6
97,483 + -2.0
97,507 + +0.5
97,516 + -0.2
97,516 + +2.5
97,516 + +0.9
97,517 - -0.6
97,517 - +0.6
97,536 - -0.1
97,540 + -0.4
97,540 + +0.4
97,540 + -2.2
97,541 - -0.2
97,541 - -0.5
97,541 - -1.4
97,541 - -0.6
97,541 - +0.4
97,607 + -1.6
97,643 - -0.0
97,643 - -1.0
97,667 + -2.1
97,667 + -0.7
97,668 - -0.5
97,740 + -0.0
97,835 - DDA3937_RS00415 0.16 +0.9
97,835 - DDA3937_RS00415 0.16 -0.3
97,899 - DDA3937_RS00415 0.20 -0.2
97,899 - DDA3937_RS00415 0.20 +1.8
97,928 + DDA3937_RS00415 0.23 -1.3
97,968 + DDA3937_RS00415 0.26 -0.3
97,969 - DDA3937_RS00415 0.26 +0.7
97,969 - DDA3937_RS00415 0.26 -0.2
97,969 - DDA3937_RS00415 0.26 -0.7
97,969 - DDA3937_RS00415 0.26 +0.5
97,969 - DDA3937_RS00415 0.26 +1.5
98,008 + DDA3937_RS00415 0.29 +1.4
98,009 - DDA3937_RS00415 0.29 -0.1
98,256 + DDA3937_RS00415 0.47 +1.4
98,256 + DDA3937_RS00415 0.47 +0.1
98,256 + DDA3937_RS00415 0.47 -0.5
98,256 + DDA3937_RS00415 0.47 -0.1
98,256 + DDA3937_RS00415 0.47 +1.8
98,256 + DDA3937_RS00415 0.47 +0.4
98,256 + DDA3937_RS00415 0.47 +1.0
98,256 + DDA3937_RS00415 0.47 +0.2
98,256 + DDA3937_RS00415 0.47 -1.0
98,256 + DDA3937_RS00415 0.47 -0.5
98,256 + DDA3937_RS00415 0.47 +0.4
98,256 + DDA3937_RS00415 0.47 -1.6
98,256 + DDA3937_RS00415 0.47 -0.6
98,256 + DDA3937_RS00415 0.47 -1.0
98,256 + DDA3937_RS00415 0.47 -0.8
98,257 - DDA3937_RS00415 0.47 -2.2
98,257 - DDA3937_RS00415 0.47 +0.1
98,257 - DDA3937_RS00415 0.47 +0.5
98,257 - DDA3937_RS00415 0.47 -0.3
98,257 - +0.4
98,257 - DDA3937_RS00415 0.47 +1.4
98,257 - DDA3937_RS00415 0.47 +0.3
98,257 - DDA3937_RS00415 0.47 +0.2
98,257 - DDA3937_RS00415 0.47 -0.2
98,257 - DDA3937_RS00415 0.47 -1.6
98,257 - DDA3937_RS00415 0.47 -1.1
98,257 - DDA3937_RS00415 0.47 +0.2
98,257 - DDA3937_RS00415 0.47 +1.7
98,257 - DDA3937_RS00415 0.47 -0.8
98,257 - DDA3937_RS00415 0.47 +0.1
98,257 - DDA3937_RS00415 0.47 +2.6
98,257 - DDA3937_RS00415 0.47 -0.6
98,257 - DDA3937_RS00415 0.47 -0.3
98,258 + DDA3937_RS00415 0.47 -0.0
98,259 - DDA3937_RS00415 0.47 +2.7
98,259 - -1.2
98,473 + DDA3937_RS00415 0.63 -0.6
98,474 - DDA3937_RS00415 0.63 +0.6
98,474 - DDA3937_RS00415 0.63 -1.6
98,474 - DDA3937_RS00415 0.63 -0.2
98,504 + DDA3937_RS00415 0.65 -1.1
98,504 + DDA3937_RS00415 0.65 -0.2
98,505 - DDA3937_RS00415 0.65 -0.6
98,505 - DDA3937_RS00415 0.65 -0.4

Or see this region's nucleotide sequence