Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03980 and DDA3937_RS21900 are separated by 36 nucleotides DDA3937_RS21900 and DDA3937_RS03985 are separated by 217 nucleotides
DDA3937_RS03980: DDA3937_RS03980 - LysR family transcriptional regulator, at 888,714 to 889,628
_RS03980
DDA3937_RS21900: DDA3937_RS21900 - entry exclusion lipoprotein TrbK, at 889,665 to 889,913
_RS21900
DDA3937_RS03985: DDA3937_RS03985 - conjugal transfer protein TraG, at 890,131 to 892,086
_RS03985
Position (kb) 889
890 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 888.735 kb on + strand at 888.736 kb on - strand at 888.791 kb on + strand at 888.792 kb on - strand at 888.821 kb on + strand, within DDA3937_RS03980 at 888.822 kb on - strand, within DDA3937_RS03980 at 888.859 kb on + strand, within DDA3937_RS03980 at 888.860 kb on - strand, within DDA3937_RS03980 at 888.860 kb on - strand, within DDA3937_RS03980 at 888.901 kb on + strand, within DDA3937_RS03980 at 888.979 kb on - strand, within DDA3937_RS03980 at 889.014 kb on - strand at 889.014 kb on - strand, within DDA3937_RS03980 at 889.016 kb on + strand at 889.076 kb on + strand, within DDA3937_RS03980 at 889.134 kb on + strand, within DDA3937_RS03980 at 889.134 kb on + strand, within DDA3937_RS03980 at 889.135 kb on - strand, within DDA3937_RS03980 at 889.135 kb on - strand, within DDA3937_RS03980 at 889.135 kb on - strand, within DDA3937_RS03980 at 889.135 kb on - strand, within DDA3937_RS03980 at 889.178 kb on + strand, within DDA3937_RS03980 at 889.178 kb on + strand, within DDA3937_RS03980 at 889.179 kb on - strand, within DDA3937_RS03980 at 889.179 kb on - strand, within DDA3937_RS03980 at 889.246 kb on - strand, within DDA3937_RS03980 at 889.306 kb on + strand, within DDA3937_RS03980 at 889.306 kb on + strand, within DDA3937_RS03980 at 889.306 kb on + strand, within DDA3937_RS03980 at 889.307 kb on - strand, within DDA3937_RS03980 at 889.307 kb on - strand, within DDA3937_RS03980 at 889.307 kb on - strand, within DDA3937_RS03980 at 889.451 kb on + strand, within DDA3937_RS03980 at 889.452 kb on - strand, within DDA3937_RS03980 at 889.521 kb on + strand, within DDA3937_RS03980 at 889.521 kb on + strand, within DDA3937_RS03980 at 889.521 kb on + strand, within DDA3937_RS03980 at 889.521 kb on + strand, within DDA3937_RS03980 at 889.521 kb on + strand, within DDA3937_RS03980 at 889.522 kb on - strand, within DDA3937_RS03980 at 889.522 kb on - strand, within DDA3937_RS03980 at 889.659 kb on - strand at 889.665 kb on - strand at 889.742 kb on - strand, within DDA3937_RS21900 at 889.742 kb on - strand, within DDA3937_RS21900 at 889.750 kb on + strand, within DDA3937_RS21900 at 889.750 kb on + strand, within DDA3937_RS21900 at 889.772 kb on - strand, within DDA3937_RS21900 at 889.881 kb on + strand, within DDA3937_RS21900 at 890.002 kb on - strand at 890.003 kb on + strand at 890.003 kb on + strand at 890.004 kb on - strand at 890.092 kb on + strand at 890.147 kb on + strand at 890.153 kb on + strand at 890.154 kb on - strand at 890.200 kb on + strand at 890.285 kb on - strand at 890.329 kb on + strand, within DDA3937_RS03985 at 890.449 kb on + strand, within DDA3937_RS03985 at 890.481 kb on + strand, within DDA3937_RS03985 at 890.501 kb on - strand, within DDA3937_RS03985 at 890.532 kb on + strand at 890.654 kb on + strand, within DDA3937_RS03985 at 890.654 kb on + strand, within DDA3937_RS03985 at 890.755 kb on + strand, within DDA3937_RS03985 at 890.756 kb on - strand, within DDA3937_RS03985
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 888,735 + -0.4 888,736 - +0.3 888,791 + +0.3 888,792 - -0.9 888,821 + DDA3937_RS03980 0.12 +0.4 888,822 - DDA3937_RS03980 0.12 +0.1 888,859 + DDA3937_RS03980 0.16 -0.5 888,860 - DDA3937_RS03980 0.16 +0.2 888,860 - DDA3937_RS03980 0.16 +0.1 888,901 + DDA3937_RS03980 0.20 -0.6 888,979 - DDA3937_RS03980 0.29 -1.8 889,014 - -0.8 889,014 - DDA3937_RS03980 0.33 +0.4 889,016 + +1.1 889,076 + DDA3937_RS03980 0.40 +0.2 889,134 + DDA3937_RS03980 0.46 -0.4 889,134 + DDA3937_RS03980 0.46 +1.1 889,135 - DDA3937_RS03980 0.46 -0.5 889,135 - DDA3937_RS03980 0.46 -0.4 889,135 - DDA3937_RS03980 0.46 -1.1 889,135 - DDA3937_RS03980 0.46 -1.1 889,178 + DDA3937_RS03980 0.51 +0.1 889,178 + DDA3937_RS03980 0.51 +0.9 889,179 - DDA3937_RS03980 0.51 +0.1 889,179 - DDA3937_RS03980 0.51 +0.4 889,246 - DDA3937_RS03980 0.58 -1.9 889,306 + DDA3937_RS03980 0.65 +0.2 889,306 + DDA3937_RS03980 0.65 +0.2 889,306 + DDA3937_RS03980 0.65 +0.9 889,307 - DDA3937_RS03980 0.65 +0.1 889,307 - DDA3937_RS03980 0.65 +0.5 889,307 - DDA3937_RS03980 0.65 -1.3 889,451 + DDA3937_RS03980 0.81 -1.6 889,452 - DDA3937_RS03980 0.81 -1.3 889,521 + DDA3937_RS03980 0.88 -1.0 889,521 + DDA3937_RS03980 0.88 -0.1 889,521 + DDA3937_RS03980 0.88 -1.3 889,521 + DDA3937_RS03980 0.88 -1.9 889,521 + DDA3937_RS03980 0.88 +0.4 889,522 - DDA3937_RS03980 0.88 -0.5 889,522 - DDA3937_RS03980 0.88 +5.0 889,659 - +0.7 889,665 - +1.5 889,742 - DDA3937_RS21900 0.31 -0.6 889,742 - DDA3937_RS21900 0.31 -0.8 889,750 + DDA3937_RS21900 0.34 -1.5 889,750 + DDA3937_RS21900 0.34 +0.8 889,772 - DDA3937_RS21900 0.43 -0.2 889,881 + DDA3937_RS21900 0.87 -0.6 890,002 - -0.4 890,003 + -2.3 890,003 + +0.1 890,004 - -1.9 890,092 + -1.3 890,147 + -2.1 890,153 + -0.2 890,154 - -0.0 890,200 + +0.4 890,285 - -1.8 890,329 + DDA3937_RS03985 0.10 +0.6 890,449 + DDA3937_RS03985 0.16 +0.5 890,481 + DDA3937_RS03985 0.18 +0.2 890,501 - DDA3937_RS03985 0.19 -0.5 890,532 + -0.1 890,654 + DDA3937_RS03985 0.27 -0.1 890,654 + DDA3937_RS03985 0.27 +1.4 890,755 + DDA3937_RS03985 0.32 -1.1 890,756 - DDA3937_RS03985 0.32 +1.8
Or see this region's nucleotide sequence