Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21430

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,879,481	+		DDA3937_RS21425	0.50	-0.6
4,879,481	+		DDA3937_RS21425	0.50	+0.6
4,879,482	-		DDA3937_RS21425	0.50	-0.2
4,879,547	-		DDA3937_RS21425	0.55	-1.0
4,879,603	+		DDA3937_RS21425	0.59	-0.4
4,879,603	+		DDA3937_RS21425	0.59	+1.0
4,879,604	-		DDA3937_RS21425	0.59	-1.3
4,879,681	+		DDA3937_RS21425	0.65	-0.9
4,879,681	+		DDA3937_RS21425	0.65	-2.0
4,879,681	+		DDA3937_RS21425	0.65	-0.9
4,879,682	-		DDA3937_RS21425	0.65	-1.0
4,879,682	-		DDA3937_RS21425	0.65	+0.3
4,879,688	-		DDA3937_RS21425	0.65	-1.3
4,879,688	-		DDA3937_RS21425	0.65	+0.3
4,879,688	-		DDA3937_RS21425	0.65	+0.7
4,879,736	-				+2.3
4,879,766	+		DDA3937_RS21425	0.71	+0.1
4,879,767	-		DDA3937_RS21425	0.71	+0.8
4,879,767	-		DDA3937_RS21425	0.71	+0.5
4,879,928	-		DDA3937_RS21425	0.83	+0.6
4,880,022	+				+2.3
4,880,022	+				-0.5
4,880,022	+				+0.2
4,880,022	+				-1.3
4,880,022	+				-1.2
4,880,022	+				+0.3
4,880,022	+				+0.4
4,880,023	-				-1.4
4,880,023	-				-0.1
4,880,023	-				+2.0
4,880,023	-				-0.7
4,880,023	-				-0.4
4,880,023	-				+1.9
4,880,023	-				-0.6
4,880,023	-				-0.1
4,880,023	-				+0.6
4,880,056	+				+3.8
4,880,057	-				-0.5
4,880,057	-				-1.0
4,880,057	-				-0.8
4,880,155	+				-1.5
4,880,155	+				-1.7
4,880,155	+				-0.1
4,880,155	+				+3.0
4,880,156	-				+0.8
4,880,156	-				+0.5
4,880,156	-				+0.4
4,880,156	-				-0.2
4,880,156	-				+0.2
4,880,184	+				+1.4
4,880,185	-				-0.8
4,880,200	+				+1.6
4,880,200	+				-0.2
4,880,200	+				-0.5
4,880,200	+				-1.8
4,880,200	+				-1.2
4,880,200	+				+0.7
4,880,200	+				-0.2
4,880,200	+				+1.8
4,880,200	+				+0.2
4,880,200	+				-0.2
4,880,200	+				+0.5
4,880,200	+				-0.0
4,880,200	+				-1.8
4,880,200	+				-0.1
4,880,200	+				-1.0
4,880,200	+				-0.5
4,880,201	-				+0.8
4,880,201	-				-0.0
4,880,201	-				-0.7
4,880,202	+				-0.4
4,880,264	+				-0.4
4,880,264	+				+2.8
4,880,265	-				+0.2
4,880,265	-				-0.7
4,880,267	-				-0.2
4,880,334	+				+0.3
4,880,334	+				-0.5
4,880,335	-				-0.6
4,880,373	+				+0.0
4,880,374	-				-0.7
4,880,445	+				+1.6
4,880,446	-				+0.5
4,880,501	+		DDA3937_RS21430	0.11	+0.0
4,880,501	+		DDA3937_RS21430	0.11	+0.4
4,880,501	+		DDA3937_RS21430	0.11	+0.0
4,880,501	+		DDA3937_RS21430	0.11	+1.6
4,880,501	+		DDA3937_RS21430	0.11	-0.7
4,880,501	+		DDA3937_RS21430	0.11	-0.2
4,880,501	+				+0.8
4,880,501	+		DDA3937_RS21430	0.11	+1.4
4,880,501	+		DDA3937_RS21430	0.11	+0.0
4,880,502	-		DDA3937_RS21430	0.11	+0.9
4,880,502	-		DDA3937_RS21430	0.11	-0.3
4,880,502	-		DDA3937_RS21430	0.11	+0.8
4,880,502	-		DDA3937_RS21430	0.11	-1.9
4,880,502	-		DDA3937_RS21430	0.11	-0.5
4,880,502	-		DDA3937_RS21430	0.11	+0.5
4,880,502	-		DDA3937_RS21430	0.11	+0.6
4,880,509	+		DDA3937_RS21430	0.12	-0.8
4,880,509	+		DDA3937_RS21430	0.12	+0.4
4,880,509	+		DDA3937_RS21430	0.12	+1.8
4,880,510	-		DDA3937_RS21430	0.13	+0.6
4,880,516	-		DDA3937_RS21430	0.13	-1.0
4,880,516	-		DDA3937_RS21430	0.13	-1.4
4,880,579	+		DDA3937_RS21430	0.23	-0.2
4,880,580	-		DDA3937_RS21430	0.23	+0.6
4,880,712	+		DDA3937_RS21430	0.43	+1.0
4,880,712	+		DDA3937_RS21430	0.43	-0.5
4,880,822	+				+0.2
4,880,823	-		DDA3937_RS21430	0.59	-1.2
4,880,823	-		DDA3937_RS21430	0.59	+0.5
4,880,823	-		DDA3937_RS21430	0.59	+0.2
4,880,975	+		DDA3937_RS21430	0.82	-0.8
4,880,975	+		DDA3937_RS21430	0.82	-1.9
4,880,976	-		DDA3937_RS21430	0.82	-0.5
4,880,976	-		DDA3937_RS21430	0.82	+1.8
4,880,976	-		DDA3937_RS21430	0.82	-1.8
4,880,976	-		DDA3937_RS21430	0.82	+6.7
4,880,978	+		DDA3937_RS21430	0.83	-1.2
4,880,979	-		DDA3937_RS21430	0.83	-0.6
4,880,995	+		DDA3937_RS21430	0.85	-0.2
4,880,995	+		DDA3937_RS21430	0.85	-0.5
4,881,150	-				-1.7
4,881,245	-		DDA3937_RS21435	0.19	-0.8
4,881,281	-		DDA3937_RS21435	0.24	+0.6
4,881,343	+		DDA3937_RS21435	0.32	-0.2
4,881,343	+		DDA3937_RS21435	0.32	-1.3
4,881,343	+		DDA3937_RS21435	0.32	-1.7
4,881,344	-		DDA3937_RS21435	0.32	-1.0
4,881,344	-		DDA3937_RS21435	0.32	-1.3
4,881,344	-		DDA3937_RS21435	0.32	-0.1
4,881,356	+		DDA3937_RS21435	0.34	+1.2
4,881,357	-		DDA3937_RS21435	0.34	+2.6
4,881,362	+		DDA3937_RS21435	0.35	-0.3
4,881,363	-		DDA3937_RS21435	0.35	+0.1
4,881,431	-		DDA3937_RS21435	0.44	-1.2
4,881,431	-		DDA3937_RS21435	0.44	-1.5
4,881,431	-		DDA3937_RS21435	0.44	-1.7
4,881,529	+		DDA3937_RS21435	0.57	-1.0
4,881,530	-		DDA3937_RS21435	0.57	-0.7
4,881,530	-		DDA3937_RS21435	0.57	-0.2
4,881,613	+		DDA3937_RS21435	0.68	-0.8
4,881,614	-		DDA3937_RS21435	0.68	-2.4
4,881,614	-		DDA3937_RS21435	0.68	-2.0
4,881,614	-		DDA3937_RS21435	0.68	-0.5
4,881,614	-		DDA3937_RS21435	0.68	+0.9
4,881,614	-		DDA3937_RS21435	0.68	-0.5
4,881,697	+		DDA3937_RS21435	0.79	+0.4
4,881,697	+		DDA3937_RS21435	0.79	+2.0
4,881,698	-		DDA3937_RS21435	0.79	+1.3
4,881,823	+				+3.2
4,881,824	-				+0.9
4,881,824	-				+0.0
4,881,827	+				-0.8
4,881,828	-				+0.1
4,881,828	-				+1.9
4,881,828	-				+1.0
4,881,828	-				-1.3
4,881,828	-				-1.5
4,881,828	-				+1.4
4,881,930	+				-0.8
4,881,932	+				-0.7
4,881,932	+				-1.2
4,881,933	-				-0.4
4,881,933	-				-0.5
4,881,933	-				-0.1
4,881,937	+		DDA3937_RS21440	0.10	-1.0
4,881,937	+		DDA3937_RS21440	0.10	-1.7
4,881,937	+		DDA3937_RS21440	0.10	-1.7
4,881,938	-		DDA3937_RS21440	0.11	-1.1
4,882,001	+		DDA3937_RS21440	0.19	-0.5
4,882,001	+		DDA3937_RS21440	0.19	+0.7
4,882,001	+		DDA3937_RS21440	0.19	-0.2
4,882,001	+		DDA3937_RS21440	0.19	-0.2
4,882,001	+		DDA3937_RS21440	0.19	+1.2
4,882,002	-		DDA3937_RS21440	0.19	+0.0
4,882,002	-		DDA3937_RS21440	0.19	-0.9
4,882,002	-		DDA3937_RS21440	0.19	-0.2
4,882,002	-		DDA3937_RS21440	0.19	-0.5
4,882,002	-		DDA3937_RS21440	0.19	-1.0
4,882,048	-		DDA3937_RS21440	0.25	-1.0
4,882,061	+		DDA3937_RS21440	0.27	-0.6
4,882,061	+		DDA3937_RS21440	0.27	-0.0
4,882,061	+		DDA3937_RS21440	0.27	+0.8
4,882,062	-		DDA3937_RS21440	0.27	+0.8
4,882,062	-		DDA3937_RS21440	0.27	+2.0