Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21175 and DDA3937_RS21180 are separated by 104 nucleotides DDA3937_RS21180 and DDA3937_RS21185 are separated by 47 nucleotides DDA3937_RS21185 and DDA3937_RS21190 are separated by 15 nucleotides
DDA3937_RS21175: DDA3937_RS21175 - formyl-CoA transferase, at 4,819,822 to 4,821,069
_RS21175
DDA3937_RS21180: DDA3937_RS21180 - MFS transporter, at 4,821,174 to 4,822,436
_RS21180
DDA3937_RS21185: DDA3937_RS21185 - 2OG-Fe dioxygenase family protein, at 4,822,484 to 4,823,203
_RS21185
DDA3937_RS21190: DDA3937_RS21190 - ATP-grasp domain-containing protein, at 4,823,219 to 4,824,625
_RS21190
Position (kb) 4821
4822
4823 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4820.430 kb on - strand, within DDA3937_RS21175 at 4820.478 kb on + strand, within DDA3937_RS21175 at 4820.486 kb on + strand, within DDA3937_RS21175 at 4820.497 kb on + strand, within DDA3937_RS21175 at 4820.498 kb on - strand, within DDA3937_RS21175 at 4820.535 kb on - strand, within DDA3937_RS21175 at 4820.535 kb on - strand, within DDA3937_RS21175 at 4820.577 kb on + strand, within DDA3937_RS21175 at 4820.577 kb on + strand, within DDA3937_RS21175 at 4820.583 kb on + strand, within DDA3937_RS21175 at 4820.583 kb on + strand, within DDA3937_RS21175 at 4820.617 kb on + strand, within DDA3937_RS21175 at 4820.618 kb on - strand, within DDA3937_RS21175 at 4820.618 kb on - strand, within DDA3937_RS21175 at 4820.623 kb on + strand, within DDA3937_RS21175 at 4820.624 kb on - strand, within DDA3937_RS21175 at 4820.624 kb on - strand, within DDA3937_RS21175 at 4820.624 kb on - strand, within DDA3937_RS21175 at 4820.732 kb on + strand, within DDA3937_RS21175 at 4820.732 kb on + strand, within DDA3937_RS21175 at 4820.732 kb on + strand, within DDA3937_RS21175 at 4820.733 kb on - strand, within DDA3937_RS21175 at 4820.778 kb on + strand, within DDA3937_RS21175 at 4820.778 kb on + strand, within DDA3937_RS21175 at 4820.778 kb on + strand, within DDA3937_RS21175 at 4820.779 kb on - strand, within DDA3937_RS21175 at 4820.779 kb on - strand, within DDA3937_RS21175 at 4820.809 kb on + strand, within DDA3937_RS21175 at 4820.809 kb on + strand, within DDA3937_RS21175 at 4820.810 kb on - strand, within DDA3937_RS21175 at 4820.810 kb on - strand, within DDA3937_RS21175 at 4820.810 kb on - strand, within DDA3937_RS21175 at 4820.917 kb on + strand, within DDA3937_RS21175 at 4820.918 kb on - strand, within DDA3937_RS21175 at 4821.023 kb on - strand at 4821.086 kb on - strand at 4821.091 kb on + strand at 4821.150 kb on + strand at 4821.150 kb on + strand at 4821.150 kb on + strand at 4821.150 kb on + strand at 4821.150 kb on + strand at 4821.151 kb on - strand at 4821.151 kb on - strand at 4821.151 kb on - strand at 4821.235 kb on + strand at 4821.319 kb on + strand, within DDA3937_RS21180 at 4821.319 kb on + strand, within DDA3937_RS21180 at 4821.319 kb on + strand, within DDA3937_RS21180 at 4821.320 kb on - strand, within DDA3937_RS21180 at 4821.320 kb on - strand, within DDA3937_RS21180 at 4821.320 kb on - strand, within DDA3937_RS21180 at 4821.390 kb on - strand, within DDA3937_RS21180 at 4821.474 kb on + strand, within DDA3937_RS21180 at 4821.474 kb on + strand, within DDA3937_RS21180 at 4821.474 kb on + strand, within DDA3937_RS21180 at 4821.474 kb on + strand, within DDA3937_RS21180 at 4821.474 kb on + strand, within DDA3937_RS21180 at 4821.475 kb on - strand, within DDA3937_RS21180 at 4821.475 kb on - strand, within DDA3937_RS21180 at 4821.475 kb on - strand, within DDA3937_RS21180 at 4821.475 kb on - strand, within DDA3937_RS21180 at 4821.475 kb on - strand, within DDA3937_RS21180 at 4821.475 kb on - strand, within DDA3937_RS21180 at 4821.521 kb on + strand at 4821.522 kb on - strand, within DDA3937_RS21180 at 4821.522 kb on - strand, within DDA3937_RS21180 at 4821.665 kb on + strand, within DDA3937_RS21180 at 4821.665 kb on + strand, within DDA3937_RS21180 at 4821.717 kb on - strand, within DDA3937_RS21180 at 4821.717 kb on - strand, within DDA3937_RS21180 at 4821.860 kb on + strand, within DDA3937_RS21180 at 4821.861 kb on - strand, within DDA3937_RS21180 at 4821.895 kb on + strand, within DDA3937_RS21180 at 4821.895 kb on + strand, within DDA3937_RS21180 at 4821.895 kb on + strand, within DDA3937_RS21180 at 4821.895 kb on + strand, within DDA3937_RS21180 at 4821.895 kb on + strand, within DDA3937_RS21180 at 4821.895 kb on + strand, within DDA3937_RS21180 at 4821.895 kb on + strand, within DDA3937_RS21180 at 4821.896 kb on - strand, within DDA3937_RS21180 at 4821.896 kb on - strand at 4821.896 kb on - strand, within DDA3937_RS21180 at 4821.896 kb on - strand, within DDA3937_RS21180 at 4821.896 kb on - strand, within DDA3937_RS21180 at 4821.896 kb on - strand, within DDA3937_RS21180 at 4821.896 kb on - strand, within DDA3937_RS21180 at 4822.117 kb on - strand, within DDA3937_RS21180 at 4822.312 kb on + strand at 4822.312 kb on + strand at 4822.313 kb on - strand at 4822.313 kb on - strand at 4822.313 kb on - strand at 4822.313 kb on - strand at 4822.313 kb on - strand at 4822.318 kb on + strand at 4822.318 kb on + strand at 4822.318 kb on + strand at 4822.318 kb on + strand at 4822.318 kb on + strand at 4822.318 kb on + strand at 4822.318 kb on + strand at 4822.319 kb on - strand at 4822.319 kb on - strand at 4822.394 kb on + strand at 4822.395 kb on - strand at 4822.395 kb on - strand at 4822.445 kb on - strand at 4822.452 kb on + strand at 4822.452 kb on + strand at 4822.452 kb on + strand at 4822.452 kb on + strand at 4822.452 kb on + strand at 4822.453 kb on - strand at 4822.454 kb on + strand at 4822.485 kb on + strand at 4822.485 kb on + strand at 4822.486 kb on - strand at 4822.486 kb on - strand at 4822.569 kb on + strand, within DDA3937_RS21185 at 4822.570 kb on - strand, within DDA3937_RS21185 at 4822.570 kb on - strand, within DDA3937_RS21185 at 4822.796 kb on - strand, within DDA3937_RS21185 at 4822.806 kb on + strand, within DDA3937_RS21185 at 4822.806 kb on + strand, within DDA3937_RS21185 at 4822.807 kb on - strand, within DDA3937_RS21185 at 4822.807 kb on - strand, within DDA3937_RS21185 at 4822.861 kb on + strand, within DDA3937_RS21185 at 4822.861 kb on + strand, within DDA3937_RS21185 at 4822.862 kb on - strand, within DDA3937_RS21185 at 4822.862 kb on - strand, within DDA3937_RS21185 at 4822.862 kb on - strand, within DDA3937_RS21185 at 4822.868 kb on + strand, within DDA3937_RS21185 at 4822.869 kb on - strand, within DDA3937_RS21185 at 4822.885 kb on + strand, within DDA3937_RS21185 at 4822.902 kb on + strand, within DDA3937_RS21185 at 4822.902 kb on + strand, within DDA3937_RS21185 at 4822.903 kb on - strand, within DDA3937_RS21185 at 4822.927 kb on + strand, within DDA3937_RS21185 at 4822.928 kb on - strand, within DDA3937_RS21185 at 4822.928 kb on - strand, within DDA3937_RS21185 at 4822.928 kb on - strand, within DDA3937_RS21185 at 4822.929 kb on + strand, within DDA3937_RS21185 at 4822.929 kb on + strand, within DDA3937_RS21185 at 4822.930 kb on - strand, within DDA3937_RS21185 at 4822.941 kb on + strand, within DDA3937_RS21185 at 4822.941 kb on + strand, within DDA3937_RS21185 at 4822.942 kb on - strand, within DDA3937_RS21185 at 4822.942 kb on - strand, within DDA3937_RS21185 at 4823.037 kb on + strand, within DDA3937_RS21185 at 4823.037 kb on + strand, within DDA3937_RS21185 at 4823.037 kb on + strand, within DDA3937_RS21185 at 4823.037 kb on + strand, within DDA3937_RS21185 at 4823.038 kb on - strand, within DDA3937_RS21185 at 4823.069 kb on - strand, within DDA3937_RS21185 at 4823.146 kb on - strand at 4823.170 kb on + strand at 4823.170 kb on + strand at 4823.170 kb on + strand at 4823.185 kb on + strand at 4823.185 kb on + strand at 4823.225 kb on + strand at 4823.226 kb on - strand at 4823.314 kb on - strand at 4823.367 kb on + strand, within DDA3937_RS21190 at 4823.367 kb on + strand, within DDA3937_RS21190 at 4823.367 kb on + strand, within DDA3937_RS21190 at 4823.367 kb on + strand, within DDA3937_RS21190 at 4823.368 kb on - strand, within DDA3937_RS21190 at 4823.368 kb on - strand, within DDA3937_RS21190 at 4823.368 kb on - strand, within DDA3937_RS21190 at 4823.368 kb on - strand, within DDA3937_RS21190 at 4823.368 kb on - strand, within DDA3937_RS21190 at 4823.368 kb on - strand, within DDA3937_RS21190 at 4823.394 kb on + strand, within DDA3937_RS21190 at 4823.395 kb on - strand, within DDA3937_RS21190
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,820,430 - DDA3937_RS21175 0.49 -2.0 4,820,478 + DDA3937_RS21175 0.53 +1.0 4,820,486 + DDA3937_RS21175 0.53 +0.1 4,820,497 + DDA3937_RS21175 0.54 -0.8 4,820,498 - DDA3937_RS21175 0.54 +0.5 4,820,535 - DDA3937_RS21175 0.57 -0.8 4,820,535 - DDA3937_RS21175 0.57 -1.4 4,820,577 + DDA3937_RS21175 0.60 +0.5 4,820,577 + DDA3937_RS21175 0.60 -0.3 4,820,583 + DDA3937_RS21175 0.61 +0.1 4,820,583 + DDA3937_RS21175 0.61 +0.8 4,820,617 + DDA3937_RS21175 0.64 -0.5 4,820,618 - DDA3937_RS21175 0.64 -2.2 4,820,618 - DDA3937_RS21175 0.64 -1.2 4,820,623 + DDA3937_RS21175 0.64 -2.1 4,820,624 - DDA3937_RS21175 0.64 +1.1 4,820,624 - DDA3937_RS21175 0.64 -0.2 4,820,624 - DDA3937_RS21175 0.64 +0.5 4,820,732 + DDA3937_RS21175 0.73 -0.1 4,820,732 + DDA3937_RS21175 0.73 +1.0 4,820,732 + DDA3937_RS21175 0.73 +0.2 4,820,733 - DDA3937_RS21175 0.73 -1.2 4,820,778 + DDA3937_RS21175 0.77 +0.3 4,820,778 + DDA3937_RS21175 0.77 -0.1 4,820,778 + DDA3937_RS21175 0.77 +0.3 4,820,779 - DDA3937_RS21175 0.77 +2.8 4,820,779 - DDA3937_RS21175 0.77 -0.7 4,820,809 + DDA3937_RS21175 0.79 -0.8 4,820,809 + DDA3937_RS21175 0.79 -0.9 4,820,810 - DDA3937_RS21175 0.79 -0.8 4,820,810 - DDA3937_RS21175 0.79 -0.1 4,820,810 - DDA3937_RS21175 0.79 -1.1 4,820,917 + DDA3937_RS21175 0.88 -0.2 4,820,918 - DDA3937_RS21175 0.88 -0.5 4,821,023 - +1.7 4,821,086 - +0.4 4,821,091 + +1.8 4,821,150 + +0.6 4,821,150 + -0.5 4,821,150 + +1.3 4,821,150 + -0.4 4,821,150 + -1.2 4,821,151 - +0.2 4,821,151 - -0.5 4,821,151 - +4.1 4,821,235 + -2.0 4,821,319 + DDA3937_RS21180 0.11 -0.5 4,821,319 + DDA3937_RS21180 0.11 -0.8 4,821,319 + DDA3937_RS21180 0.11 -1.1 4,821,320 - DDA3937_RS21180 0.12 +0.1 4,821,320 - DDA3937_RS21180 0.12 +0.2 4,821,320 - DDA3937_RS21180 0.12 -0.2 4,821,390 - DDA3937_RS21180 0.17 -0.0 4,821,474 + DDA3937_RS21180 0.24 -3.3 4,821,474 + DDA3937_RS21180 0.24 -0.7 4,821,474 + DDA3937_RS21180 0.24 -0.6 4,821,474 + DDA3937_RS21180 0.24 -0.4 4,821,474 + DDA3937_RS21180 0.24 -0.2 4,821,475 - DDA3937_RS21180 0.24 -0.0 4,821,475 - DDA3937_RS21180 0.24 -1.4 4,821,475 - DDA3937_RS21180 0.24 +0.6 4,821,475 - DDA3937_RS21180 0.24 +0.0 4,821,475 - DDA3937_RS21180 0.24 +0.2 4,821,475 - DDA3937_RS21180 0.24 +0.7 4,821,521 + +0.2 4,821,522 - DDA3937_RS21180 0.28 -0.4 4,821,522 - DDA3937_RS21180 0.28 -1.2 4,821,665 + DDA3937_RS21180 0.39 +0.2 4,821,665 + DDA3937_RS21180 0.39 -0.1 4,821,717 - DDA3937_RS21180 0.43 -3.0 4,821,717 - DDA3937_RS21180 0.43 +1.1 4,821,860 + DDA3937_RS21180 0.54 -1.0 4,821,861 - DDA3937_RS21180 0.54 +0.5 4,821,895 + DDA3937_RS21180 0.57 +2.2 4,821,895 + DDA3937_RS21180 0.57 -3.4 4,821,895 + DDA3937_RS21180 0.57 -0.9 4,821,895 + DDA3937_RS21180 0.57 +1.4 4,821,895 + DDA3937_RS21180 0.57 -2.4 4,821,895 + DDA3937_RS21180 0.57 -0.9 4,821,895 + DDA3937_RS21180 0.57 -2.7 4,821,896 - DDA3937_RS21180 0.57 -1.0 4,821,896 - -0.2 4,821,896 - DDA3937_RS21180 0.57 +0.3 4,821,896 - DDA3937_RS21180 0.57 -2.8 4,821,896 - DDA3937_RS21180 0.57 +0.5 4,821,896 - DDA3937_RS21180 0.57 -1.0 4,821,896 - DDA3937_RS21180 0.57 -0.5 4,822,117 - DDA3937_RS21180 0.75 -0.9 4,822,312 + -0.2 4,822,312 + -1.2 4,822,313 - +0.8 4,822,313 - -0.2 4,822,313 - -1.5 4,822,313 - -1.0 4,822,313 - +0.2 4,822,318 + -0.7 4,822,318 + +0.4 4,822,318 + -0.5 4,822,318 + +0.2 4,822,318 + -0.7 4,822,318 + -0.0 4,822,318 + -0.2 4,822,319 - -1.3 4,822,319 - -0.8 4,822,394 + -0.4 4,822,395 - -1.0 4,822,395 - -0.8 4,822,445 - -1.6 4,822,452 + -2.6 4,822,452 + -0.0 4,822,452 + -0.7 4,822,452 + -1.5 4,822,452 + +0.8 4,822,453 - +0.3 4,822,454 + +0.8 4,822,485 + -0.3 4,822,485 + -0.7 4,822,486 - +0.3 4,822,486 - -1.4 4,822,569 + DDA3937_RS21185 0.12 -1.1 4,822,570 - DDA3937_RS21185 0.12 -1.5 4,822,570 - DDA3937_RS21185 0.12 -1.8 4,822,796 - DDA3937_RS21185 0.43 -0.2 4,822,806 + DDA3937_RS21185 0.45 +1.6 4,822,806 + DDA3937_RS21185 0.45 -0.8 4,822,807 - DDA3937_RS21185 0.45 +0.4 4,822,807 - DDA3937_RS21185 0.45 -1.1 4,822,861 + DDA3937_RS21185 0.52 -0.9 4,822,861 + DDA3937_RS21185 0.52 -0.6 4,822,862 - DDA3937_RS21185 0.53 -0.1 4,822,862 - DDA3937_RS21185 0.53 +0.2 4,822,862 - DDA3937_RS21185 0.53 +0.6 4,822,868 + DDA3937_RS21185 0.53 -0.4 4,822,869 - DDA3937_RS21185 0.53 -0.6 4,822,885 + DDA3937_RS21185 0.56 -0.9 4,822,902 + DDA3937_RS21185 0.58 -0.3 4,822,902 + DDA3937_RS21185 0.58 -1.0 4,822,903 - DDA3937_RS21185 0.58 +0.4 4,822,927 + DDA3937_RS21185 0.62 +0.5 4,822,928 - DDA3937_RS21185 0.62 -1.0 4,822,928 - DDA3937_RS21185 0.62 +0.1 4,822,928 - DDA3937_RS21185 0.62 -0.7 4,822,929 + DDA3937_RS21185 0.62 -2.0 4,822,929 + DDA3937_RS21185 0.62 +0.7 4,822,930 - DDA3937_RS21185 0.62 +1.2 4,822,941 + DDA3937_RS21185 0.63 -2.9 4,822,941 + DDA3937_RS21185 0.63 -1.5 4,822,942 - DDA3937_RS21185 0.64 +0.7 4,822,942 - DDA3937_RS21185 0.64 -0.5 4,823,037 + DDA3937_RS21185 0.77 +0.0 4,823,037 + DDA3937_RS21185 0.77 -1.3 4,823,037 + DDA3937_RS21185 0.77 -0.3 4,823,037 + DDA3937_RS21185 0.77 +1.2 4,823,038 - DDA3937_RS21185 0.77 -1.7 4,823,069 - DDA3937_RS21185 0.81 -1.6 4,823,146 - -0.5 4,823,170 + +0.8 4,823,170 + -0.7 4,823,170 + -0.1 4,823,185 + +0.8 4,823,185 + +0.6 4,823,225 + -1.0 4,823,226 - -1.0 4,823,314 - +0.8 4,823,367 + DDA3937_RS21190 0.11 +0.1 4,823,367 + DDA3937_RS21190 0.11 -0.6 4,823,367 + DDA3937_RS21190 0.11 +1.4 4,823,367 + DDA3937_RS21190 0.11 +0.0 4,823,368 - DDA3937_RS21190 0.11 -0.8 4,823,368 - DDA3937_RS21190 0.11 +0.2 4,823,368 - DDA3937_RS21190 0.11 -0.5 4,823,368 - DDA3937_RS21190 0.11 +0.2 4,823,368 - DDA3937_RS21190 0.11 +0.1 4,823,368 - DDA3937_RS21190 0.11 -0.8 4,823,394 + DDA3937_RS21190 0.12 -0.7 4,823,395 - DDA3937_RS21190 0.13 -0.7
Or see this region's nucleotide sequence