Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20860

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,738,300	+				-0.2
4,738,428	+				+0.0
4,738,429	-				-0.0
4,738,429	-				-0.7
4,738,437	+				-0.3
4,738,437	+				-0.7
4,738,437	+				+0.0
4,738,437	+				-0.9
4,738,438	-				-1.0
4,738,438	-				-1.7
4,738,455	+				-1.0
4,738,455	+				-1.6
4,738,455	+				+0.6
4,738,456	-				-1.2
4,738,456	-				-1.5
4,738,456	-				+0.1
4,738,471	+		DDA3937_RS20850	0.12	+0.4
4,738,523	-		DDA3937_RS20850	0.21	+0.1
4,738,539	+		DDA3937_RS20850	0.23	+0.2
4,738,539	+		DDA3937_RS20850	0.23	-0.2
4,738,587	+		DDA3937_RS20850	0.31	+0.0
4,738,587	+		DDA3937_RS20850	0.31	+0.8
4,738,587	+		DDA3937_RS20850	0.31	-0.2
4,738,587	+		DDA3937_RS20850	0.31	+0.3
4,738,588	-		DDA3937_RS20850	0.31	+0.8
4,738,588	-		DDA3937_RS20850	0.31	-0.0
4,738,588	-		DDA3937_RS20850	0.31	-0.9
4,738,588	-		DDA3937_RS20850	0.31	+0.6
4,738,588	-		DDA3937_RS20850	0.31	+0.8
4,738,715	+		DDA3937_RS20850	0.52	+0.9
4,738,715	+		DDA3937_RS20850	0.52	+3.3
4,738,716	-		DDA3937_RS20850	0.52	+1.1
4,738,716	-		DDA3937_RS20850	0.52	-0.8
4,738,717	+		DDA3937_RS20850	0.52	-1.1
4,738,718	-		DDA3937_RS20850	0.52	+1.9
4,738,783	+		DDA3937_RS20850	0.63	+1.4
4,738,783	+		DDA3937_RS20850	0.63	-0.4
4,738,783	+		DDA3937_RS20850	0.63	-1.9
4,738,784	-		DDA3937_RS20850	0.63	+1.1
4,738,887	+		DDA3937_RS20850	0.80	-0.1
4,738,905	+		DDA3937_RS20850	0.83	-0.3
4,738,905	+		DDA3937_RS20850	0.83	-1.9
4,738,905	+		DDA3937_RS20850	0.83	+0.5
4,738,906	-		DDA3937_RS20850	0.83	-1.0
4,739,045	+		DDA3937_RS20855	0.18	-1.9
4,739,046	-		DDA3937_RS20855	0.18	-0.3
4,739,117	+		DDA3937_RS20855	0.45	-0.1
4,739,117	+		DDA3937_RS20855	0.45	+0.0
4,739,118	-		DDA3937_RS20855	0.45	+0.2
4,739,250	+				-0.8
4,739,250	+				+0.7
4,739,279	+				-0.6
4,739,280	-				-0.5
4,739,280	-				-0.3
4,739,346	-				-0.2
4,739,367	+				-1.7
4,739,367	+				+0.4
4,739,368	-				-2.5
4,739,391	+		DDA3937_RS20860	0.12	+0.2
4,739,412	-				+1.8
4,739,412	-		DDA3937_RS20860	0.14	-2.1
4,739,412	-		DDA3937_RS20860	0.14	+0.4
4,739,461	-		DDA3937_RS20860	0.20	-2.4
4,739,485	+		DDA3937_RS20860	0.22	-0.3
4,739,485	+		DDA3937_RS20860	0.22	+0.4
4,739,485	+		DDA3937_RS20860	0.22	-1.3
4,739,486	-		DDA3937_RS20860	0.22	+1.2
4,739,486	-		DDA3937_RS20860	0.22	-1.2
4,739,500	-		DDA3937_RS20860	0.24	-0.1
4,739,500	-		DDA3937_RS20860	0.24	-0.9
4,739,505	+		DDA3937_RS20860	0.24	-0.4
4,739,539	+		DDA3937_RS20860	0.28	-1.0
4,739,539	+		DDA3937_RS20860	0.28	+0.4
4,739,539	+		DDA3937_RS20860	0.28	+1.8
4,739,539	+		DDA3937_RS20860	0.28	-0.5
4,739,539	+		DDA3937_RS20860	0.28	-0.4
4,739,539	+		DDA3937_RS20860	0.28	-1.0
4,739,539	+		DDA3937_RS20860	0.28	-1.5
4,739,540	-				+2.2
4,739,540	-		DDA3937_RS20860	0.28	+4.0
4,739,540	-		DDA3937_RS20860	0.28	+0.5
4,739,540	-		DDA3937_RS20860	0.28	-0.8
4,739,540	-		DDA3937_RS20860	0.28	-0.1
4,739,540	-		DDA3937_RS20860	0.28	-0.6
4,739,541	+		DDA3937_RS20860	0.28	-0.5
4,739,541	+		DDA3937_RS20860	0.28	-0.8
4,739,542	-		DDA3937_RS20860	0.28	-1.1
4,739,542	-		DDA3937_RS20860	0.28	-0.3
4,739,542	-		DDA3937_RS20860	0.28	+0.2
4,739,542	-		DDA3937_RS20860	0.28	+1.0
4,739,598	+		DDA3937_RS20860	0.34	+0.0
4,739,599	-		DDA3937_RS20860	0.34	+3.1
4,739,602	+		DDA3937_RS20860	0.35	-1.7
4,739,602	+		DDA3937_RS20860	0.35	+0.4
4,739,602	+		DDA3937_RS20860	0.35	+0.5
4,739,602	+		DDA3937_RS20860	0.35	-0.1
4,739,603	-		DDA3937_RS20860	0.35	+0.5
4,739,603	-		DDA3937_RS20860	0.35	+0.1
4,739,643	+		DDA3937_RS20860	0.39	+0.8
4,739,643	+		DDA3937_RS20860	0.39	-1.9
4,739,644	-		DDA3937_RS20860	0.39	-0.2
4,739,646	-		DDA3937_RS20860	0.39	+1.5
4,739,823	+		DDA3937_RS20860	0.58	+0.2
4,739,972	+		DDA3937_RS20860	0.74	-0.0
4,739,973	-		DDA3937_RS20860	0.74	-1.1
4,739,973	-		DDA3937_RS20860	0.74	-0.8
4,739,973	-		DDA3937_RS20860	0.74	-2.6
4,739,973	-		DDA3937_RS20860	0.74	+0.8
4,739,973	-		DDA3937_RS20860	0.74	+0.8
4,740,012	+		DDA3937_RS20860	0.79	+0.0
4,740,012	+		DDA3937_RS20860	0.79	+2.4
4,740,013	-		DDA3937_RS20860	0.79	+0.8
4,740,013	-		DDA3937_RS20860	0.79	-1.4
4,740,013	-		DDA3937_RS20860	0.79	+0.0
4,740,089	+		DDA3937_RS20860	0.87	+0.0
4,740,090	-		DDA3937_RS20860	0.87	+4.1
4,740,273	+				-0.8
4,740,274	-				+0.1
4,740,302	+				+1.4
4,740,302	+				-0.2
4,740,302	+				-1.7
4,740,302	+				+0.5
4,740,302	+				-0.3
4,740,302	+				-0.9
4,740,303	-				-0.9
4,740,303	-				-0.3
4,740,303	-				-1.7
4,740,303	-				-0.2
4,740,303	-				-0.2
4,740,303	-				-0.6
4,740,303	-				-0.4
4,740,303	-				+0.9
4,740,303	-				-1.0
4,740,350	+		DDA3937_RS23375	0.10	-0.3
4,740,350	+		DDA3937_RS23375	0.10	-0.3
4,740,351	-		DDA3937_RS23375	0.10	+1.1
4,740,351	-		DDA3937_RS23375	0.10	+1.7
4,740,351	-		DDA3937_RS23375	0.10	-0.5
4,740,494	-		DDA3937_RS23375	0.63	-0.7
4,740,583	+				+1.8
4,740,634	+				+4.4
4,740,635	-				+0.6
4,740,635	-				-0.1
4,740,635	-				-0.7
4,740,707	-				+0.5
4,740,762	+				-0.8
4,740,776	+				-0.4
4,740,776	+				-0.2
4,740,778	+				-0.2
4,740,778	+				+1.2
4,740,779	-				+0.5
4,740,779	-				-0.7
4,740,779	-				-0.4
4,740,779	-				+1.5
4,740,779	-				+3.9
4,740,779	-				+0.8
4,740,779	-				-1.0
4,740,779	-				+0.6
4,740,779	-				-0.2
4,740,926	+				-0.1
4,740,926	+				-0.5
4,740,926	+				-3.4
4,740,927	-				-0.8
4,740,927	-				+1.6
4,740,927	-				-1.2
4,740,935	+				-0.2
4,740,935	+				+1.2
4,740,936	-				+0.2
4,740,940	-				-1.6
4,740,940	-				-2.3
4,740,971	+				-0.5
4,740,987	-				+0.3
4,741,046	-		DDA3937_RS20865	0.11	-0.4
4,741,046	-		DDA3937_RS20865	0.11	-0.5
4,741,120	+		DDA3937_RS20865	0.13	-0.0
4,741,121	-		DDA3937_RS20865	0.13	-0.9
4,741,121	-		DDA3937_RS20865	0.13	-0.3
4,741,133	+		DDA3937_RS20865	0.13	+0.2
4,741,134	-		DDA3937_RS20865	0.13	+0.3
4,741,134	-		DDA3937_RS20865	0.13	-0.5
4,741,134	-		DDA3937_RS20865	0.13	-0.7
4,741,134	-		DDA3937_RS20865	0.13	-0.5
4,741,134	-		DDA3937_RS20865	0.13	-0.5
4,741,135	+		DDA3937_RS20865	0.13	-0.6
4,741,135	+		DDA3937_RS20865	0.13	+1.2
4,741,136	-		DDA3937_RS20865	0.13	-1.0
4,741,136	-		DDA3937_RS20865	0.13	-1.1
4,741,136	-		DDA3937_RS20865	0.13	-1.0
4,741,172	+		DDA3937_RS20865	0.14	-0.5
4,741,172	+		DDA3937_RS20865	0.14	-0.4
4,741,172	+		DDA3937_RS20865	0.14	-0.6
4,741,172	+		DDA3937_RS20865	0.14	-0.9
4,741,173	-		DDA3937_RS20865	0.14	-1.7
4,741,173	-		DDA3937_RS20865	0.14	+1.5
4,741,204	+		DDA3937_RS20865	0.15	+2.0
4,741,204	+		DDA3937_RS20865	0.15	+0.2
4,741,204	+		DDA3937_RS20865	0.15	-0.9
4,741,205	-		DDA3937_RS20865	0.15	-2.3
4,741,205	-		DDA3937_RS20865	0.15	-0.6