Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20830

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,733,015	-		DDA3937_RS20825	0.61	-0.1
4,733,015	-		DDA3937_RS20825	0.61	-0.5
4,733,104	-		DDA3937_RS20825	0.65	-1.4
4,733,104	-		DDA3937_RS20825	0.65	+0.3
4,733,104	-		DDA3937_RS20825	0.65	-1.4
4,733,140	+		DDA3937_RS20825	0.66	-1.4
4,733,213	-		DDA3937_RS20825	0.69	-0.2
4,733,221	-		DDA3937_RS20825	0.69	-1.5
4,733,223	+		DDA3937_RS20825	0.69	-0.5
4,733,224	-		DDA3937_RS20825	0.69	-1.6
4,733,239	-		DDA3937_RS20825	0.70	-0.0
4,733,315	+		DDA3937_RS20825	0.73	-1.7
4,733,315	+		DDA3937_RS20825	0.73	+0.2
4,733,315	+		DDA3937_RS20825	0.73	+0.6
4,733,316	-		DDA3937_RS20825	0.73	-1.0
4,733,316	-		DDA3937_RS20825	0.73	+1.8
4,733,316	-		DDA3937_RS20825	0.73	+0.0
4,733,316	-		DDA3937_RS20825	0.73	-2.3
4,733,316	-		DDA3937_RS20825	0.73	+0.2
4,733,321	+		DDA3937_RS20825	0.73	-2.4
4,733,321	+		DDA3937_RS20825	0.73	-1.0
4,733,322	-		DDA3937_RS20825	0.73	-2.1
4,733,386	-		DDA3937_RS20825	0.76	-0.0
4,733,416	-		DDA3937_RS20825	0.77	-0.1
4,733,435	+		DDA3937_RS20825	0.78	-0.1
4,733,436	-		DDA3937_RS20825	0.78	-2.0
4,733,436	-		DDA3937_RS20825	0.78	-1.7
4,733,436	-		DDA3937_RS20825	0.78	-1.0
4,733,440	-		DDA3937_RS20825	0.78	-1.7
4,733,469	+		DDA3937_RS20825	0.80	-0.1
4,733,495	+		DDA3937_RS20825	0.81	-2.9
4,733,513	+		DDA3937_RS20825	0.81	-0.8
4,733,513	+		DDA3937_RS20825	0.81	+0.7
4,733,527	-		DDA3937_RS20825	0.82	+0.2
4,733,533	+				+0.2
4,733,534	-		DDA3937_RS20825	0.82	-1.5
4,733,598	-		DDA3937_RS20825	0.85	-1.9
4,733,601	+		DDA3937_RS20825	0.85	+0.2
4,733,601	+		DDA3937_RS20825	0.85	-2.5
4,733,601	+		DDA3937_RS20825	0.85	-1.9
4,733,601	+		DDA3937_RS20825	0.85	+0.2
4,733,601	+		DDA3937_RS20825	0.85	-1.1
4,733,601	+		DDA3937_RS20825	0.85	-1.9
4,733,601	+		DDA3937_RS20825	0.85	-0.4
4,733,602	-		DDA3937_RS20825	0.85	-1.4
4,733,602	-		DDA3937_RS20825	0.85	-0.2
4,733,602	-		DDA3937_RS20825	0.85	-1.8
4,733,602	-		DDA3937_RS20825	0.85	-0.1
4,733,602	-		DDA3937_RS20825	0.85	-0.0
4,733,605	+				+1.1
4,733,605	+		DDA3937_RS20825	0.85	-0.2
4,733,605	+		DDA3937_RS20825	0.85	-1.5
4,733,605	+		DDA3937_RS20825	0.85	+0.4
4,733,605	+		DDA3937_RS20825	0.85	-0.5
4,733,605	+		DDA3937_RS20825	0.85	+0.8
4,733,606	-		DDA3937_RS20825	0.85	-0.3
4,733,606	-		DDA3937_RS20825	0.85	-1.0
4,733,606	-		DDA3937_RS20825	0.85	-1.7
4,733,607	+		DDA3937_RS20825	0.85	+0.8
4,733,608	-		DDA3937_RS20825	0.85	-1.3
4,733,616	+		DDA3937_RS20825	0.86	-0.7
4,733,617	-		DDA3937_RS20825	0.86	+2.4
4,733,633	+		DDA3937_RS20825	0.86	+1.2
4,733,634	-		DDA3937_RS20825	0.86	-1.3
4,733,638	-		DDA3937_RS20825	0.86	-0.2
4,733,638	-		DDA3937_RS20825	0.86	-0.7
4,733,678	+		DDA3937_RS20825	0.88	+0.8
4,733,684	+		DDA3937_RS20825	0.88	+0.8
4,733,684	+		DDA3937_RS20825	0.88	+0.2
4,733,691	+		DDA3937_RS20825	0.89	-1.7
4,733,728	-				-0.1
4,733,730	-				-3.1
4,733,730	-				-1.0
4,733,828	+				-0.5
4,733,828	+				+0.2
4,733,828	+				-0.5
4,733,829	-				+1.4
4,733,838	+				-0.9
4,733,852	+				-1.1
4,733,852	+				-1.4
4,733,852	+				-0.2
4,733,852	+				-0.0
4,733,852	+				-0.8
4,733,852	+				-1.3
4,733,852	+				-1.1
4,733,852	+				+1.7
4,733,852	+				-1.1
4,733,853	-				-0.9
4,733,853	-				-2.1
4,733,853	-				-0.2
4,733,853	-				-0.4
4,733,853	-				+0.8
4,733,853	-				-2.2
4,733,856	+				-0.0
4,733,856	+				+0.1
4,733,856	+				+0.5
4,733,856	+				-0.5
4,733,856	+				-1.3
4,733,856	+				+1.2
4,733,856	+				+1.8
4,733,856	+				-0.8
4,733,856	+				-1.0
4,733,856	+				-1.2
4,733,856	+				+0.8
4,733,856	+				-0.3
4,733,856	+				-0.5
4,733,856	+				+0.8
4,733,856	+				+0.3
4,733,856	+				-0.8
4,733,856	+				-0.0
4,733,857	-				-0.7
4,733,857	-				-0.4
4,733,857	-				+0.6
4,733,857	-				-2.2
4,733,857	-				-0.3
4,733,857	-				-0.0
4,733,857	-				+1.8
4,733,857	-				-1.8
4,733,857	-				-0.8
4,733,858	+				+0.4
4,733,858	+				+3.1
4,733,858	+				-0.2
4,733,858	+				+0.1
4,733,858	+				-0.6
4,733,858	+				+1.4
4,733,859	-				-1.0
4,733,859	-				-1.1
4,733,859	-				-1.1
4,733,859	-				-0.2
4,733,859	-				-1.4
4,733,859	-				-0.9
4,733,859	-				-0.4
4,733,973	+				-0.8
4,733,974	-				+1.6
4,733,987	+				-0.1
4,733,987	+				+0.7
4,733,987	+				+0.3
4,733,987	+				-0.4
4,733,988	-				-0.5
4,733,988	-				-1.1
4,734,121	+		DDA3937_RS20830	0.21	+1.3
4,734,121	+		DDA3937_RS20830	0.21	+0.1
4,734,121	+		DDA3937_RS20830	0.21	+0.4
4,734,122	-		DDA3937_RS20830	0.21	+0.8
4,734,122	-		DDA3937_RS20830	0.21	-1.1
4,734,343	-		DDA3937_RS20830	0.52	+2.4
4,734,343	-		DDA3937_RS20830	0.52	+0.5
4,734,394	+		DDA3937_RS20830	0.60	+0.5
4,734,394	+		DDA3937_RS20830	0.60	+2.1
4,734,395	-		DDA3937_RS20830	0.60	+1.1
4,734,464	+		DDA3937_RS20830	0.69	+0.1
4,734,464	+		DDA3937_RS20830	0.69	-0.2
4,734,464	+		DDA3937_RS20830	0.69	+1.3
4,734,464	+		DDA3937_RS20830	0.69	+0.4
4,734,465	-		DDA3937_RS20830	0.70	+1.1
4,734,465	-		DDA3937_RS20830	0.70	+0.3
4,734,465	-		DDA3937_RS20830	0.70	+0.7
4,734,465	-		DDA3937_RS20830	0.70	+0.4
4,734,573	+		DDA3937_RS20830	0.85	-0.7
4,734,573	+		DDA3937_RS20830	0.85	+0.8
4,734,573	+		DDA3937_RS20830	0.85	+0.9
4,734,573	+		DDA3937_RS20830	0.85	+0.7
4,734,573	+		DDA3937_RS20830	0.85	+1.1
4,734,573	+		DDA3937_RS20830	0.85	+0.4
4,734,574	-		DDA3937_RS20830	0.85	+1.6
4,734,574	-		DDA3937_RS20830	0.85	-0.7
4,734,574	-		DDA3937_RS20830	0.85	-0.0
4,734,589	+		DDA3937_RS20830	0.87	+1.2
4,734,599	+		DDA3937_RS20830	0.89	-0.3
4,734,599	+		DDA3937_RS20830	0.89	+0.1
4,734,599	+		DDA3937_RS20830	0.89	-0.2
4,734,599	+		DDA3937_RS20830	0.89	-0.2
4,734,599	+		DDA3937_RS20830	0.89	+0.5
4,734,608	-		DDA3937_RS20830	0.90	+0.9
4,734,646	+				+1.0
4,734,655	+				-0.0
4,734,655	+				-0.1
4,734,695	+				+1.0
4,734,695	+				+1.3
4,734,695	+				+0.6
4,734,696	-				-1.3
4,734,696	-				-1.4
4,734,696	-				+0.9
4,734,697	+				+0.2
4,734,697	+				-1.9
4,734,697	+				-0.8
4,734,698	-				-0.5
4,734,698	-				-0.5
4,734,698	-				-1.0
4,734,698	-				+1.3
4,734,698	-				+1.2
4,734,698	-				+0.3
4,734,698	-				-2.5
4,734,701	+				-1.9
4,734,702	-				+2.1
4,734,702	-				+1.0
4,734,729	-				+1.0
4,734,733	+				-0.7
4,734,733	+				+0.6
4,734,733	+				-0.1
4,734,733	+				-1.4
4,734,734	-				-1.4
4,734,734	-				+0.0
4,734,734	-				+0.4
4,734,734	-				+1.7
4,734,757	+				+2.0
4,734,757	+				-1.2
4,734,787	-				-0.2
4,734,787	-				+0.8
4,734,787	-				+0.8
4,734,787	-				+0.5
4,734,787	-				-0.3
4,734,787	-				-0.9
4,734,943	-				-0.6
4,734,949	+				+1.1
4,734,949	+				-1.0
4,734,949	+				-0.9
4,734,950	-				-2.4
4,734,950	-				+0.1
4,735,018	-				+1.4
4,735,018	-				+3.1
4,735,140	+				+0.2
4,735,146	+				-0.8
4,735,157	-				+0.4
4,735,235	+				-1.7
4,735,235	+				+0.8
4,735,235	+				-0.4
4,735,235	+				+0.1
4,735,235	+				-0.0
4,735,235	+				-0.2
4,735,236	-				-0.1
4,735,236	-				-0.4
4,735,236	-				-0.9
4,735,236	-				+1.1
4,735,236	-				-0.1
4,735,236	-				+1.8
4,735,236	-				+0.2
4,735,236	-				+0.1
4,735,236	-				+0.9
4,735,236	-				-0.1
4,735,276	+				-0.1
4,735,277	-				+0.9
4,735,277	-				-1.3
4,735,338	+				-0.4
4,735,338	+				-0.4
4,735,338	+				+0.8
4,735,338	+				+1.1
4,735,338	+				-1.2
4,735,339	-				+2.2
4,735,339	-				+0.3
4,735,339	-				+0.8
4,735,339	-				+1.1
4,735,339	-				+0.9
4,735,346	+				+0.3
4,735,347	-				+1.2
4,735,347	-				+2.2
4,735,347	-				+0.4
4,735,347	-				+0.3
4,735,347	-				-0.6
4,735,347	-				-0.0
4,735,355	+				+2.0
4,735,361	+				+0.6
4,735,362	-				+0.4
4,735,362	-				+0.8
4,735,388	+		DDA3937_RS20835	0.12	+0.5
4,735,389	-		DDA3937_RS20835	0.12	+1.0
4,735,389	-		DDA3937_RS20835	0.12	-0.2
4,735,389	-		DDA3937_RS20835	0.12	-0.5
4,735,392	+		DDA3937_RS20835	0.13	-1.6
4,735,392	+		DDA3937_RS20835	0.13	+5.3
4,735,392	+		DDA3937_RS20835	0.13	+0.5
4,735,393	-		DDA3937_RS20835	0.13	+1.7
4,735,393	-		DDA3937_RS20835	0.13	-0.2
4,735,393	-		DDA3937_RS20835	0.13	+0.3
4,735,393	-		DDA3937_RS20835	0.13	+0.1
4,735,406	+		DDA3937_RS20835	0.15	+0.1
4,735,407	-		DDA3937_RS20835	0.15	-0.2
4,735,437	-		DDA3937_RS20835	0.21	-1.2
4,735,467	+		DDA3937_RS20835	0.26	+0.4
4,735,467	+		DDA3937_RS20835	0.26	-1.4
4,735,467	+		DDA3937_RS20835	0.26	+0.8
4,735,467	+		DDA3937_RS20835	0.26	+0.5
4,735,467	+		DDA3937_RS20835	0.26	+1.0
4,735,468	-		DDA3937_RS20835	0.26	-0.7
4,735,468	-		DDA3937_RS20835	0.26	+1.0
4,735,468	-		DDA3937_RS20835	0.26	+2.5
4,735,468	-		DDA3937_RS20835	0.26	+1.1
4,735,468	-		DDA3937_RS20835	0.26	+0.8
4,735,468	-		DDA3937_RS20835	0.26	+1.1
4,735,468	-		DDA3937_RS20835	0.26	-0.2
4,735,469	+		DDA3937_RS20835	0.26	+1.0
4,735,469	+		DDA3937_RS20835	0.26	+0.4
4,735,469	+		DDA3937_RS20835	0.26	+0.9
4,735,469	+		DDA3937_RS20835	0.26	-0.4
4,735,469	+		DDA3937_RS20835	0.26	+0.6
4,735,469	+		DDA3937_RS20835	0.26	-0.5
4,735,470	-		DDA3937_RS20835	0.27	-0.3
4,735,470	-		DDA3937_RS20835	0.27	+1.0
4,735,470	-		DDA3937_RS20835	0.27	+0.6
4,735,470	-		DDA3937_RS20835	0.27	+0.9
4,735,470	-		DDA3937_RS20835	0.27	+3.2
4,735,470	-		DDA3937_RS20835	0.27	+1.0
4,735,470	-		DDA3937_RS20835	0.27	+0.6
4,735,493	+		DDA3937_RS20835	0.31	+2.3
4,735,493	+		DDA3937_RS20835	0.31	-0.7
4,735,493	+		DDA3937_RS20835	0.31	+0.8
4,735,494	-		DDA3937_RS20835	0.31	+0.9
4,735,494	-		DDA3937_RS20835	0.31	+0.7
4,735,494	-		DDA3937_RS20835	0.31	+0.1
4,735,496	+		DDA3937_RS20835	0.31	-0.5
4,735,496	+		DDA3937_RS20835	0.31	-0.2
4,735,496	+				+0.8
4,735,497	-		DDA3937_RS20835	0.31	+0.7
4,735,541	+		DDA3937_RS20835	0.39	+0.8
4,735,541	+		DDA3937_RS20835	0.39	+1.2
4,735,542	-		DDA3937_RS20835	0.39	+1.5
4,735,566	+		DDA3937_RS20835	0.44	+1.0
4,735,566	+		DDA3937_RS20835	0.44	-0.7
4,735,566	+		DDA3937_RS20835	0.44	+3.2
4,735,566	+		DDA3937_RS20835	0.44	-0.2
4,735,567	-		DDA3937_RS20835	0.44	+3.1
4,735,567	-		DDA3937_RS20835	0.44	-1.1
4,735,567	-		DDA3937_RS20835	0.44	+2.1
4,735,567	-		DDA3937_RS20835	0.44	+0.2
4,735,567	-		DDA3937_RS20835	0.44	+0.4
4,735,574	+		DDA3937_RS20835	0.45	-1.4
4,735,574	+		DDA3937_RS20835	0.45	+1.3
4,735,574	+		DDA3937_RS20835	0.45	+0.0
4,735,575	-		DDA3937_RS20835	0.45	-0.2
4,735,600	+		DDA3937_RS20835	0.50	+1.5
4,735,601	-		DDA3937_RS20835	0.50	+0.5