Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20825

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,731,086	+		DDA3937_RS20820	0.83	+0.9
4,731,086	+		DDA3937_RS20820	0.83	-1.0
4,731,095	+		DDA3937_RS20820	0.83	-0.1
4,731,103	+		DDA3937_RS20820	0.84	+0.2
4,731,103	+		DDA3937_RS20820	0.84	+0.4
4,731,103	+		DDA3937_RS20820	0.84	+0.4
4,731,104	-		DDA3937_RS20820	0.84	+1.4
4,731,155	+		DDA3937_RS20820	0.88	+0.4
4,731,155	+		DDA3937_RS20820	0.88	-1.2
4,731,156	-		DDA3937_RS20820	0.88	+4.4
4,731,156	-		DDA3937_RS20820	0.88	+0.7
4,731,163	-		DDA3937_RS20820	0.88	+0.5
4,731,259	+				-1.2
4,731,259	+				+1.0
4,731,260	-				+0.4
4,731,260	-				-1.0
4,731,260	-				-0.2
4,731,282	+				+1.8
4,731,282	+				+0.1
4,731,282	+				-0.0
4,731,282	+				+1.4
4,731,282	+				+0.9
4,731,283	-				+1.5
4,731,309	+				+0.4
4,731,310	-				+0.2
4,731,310	-				+0.2
4,731,318	+				-0.0
4,731,328	-				+3.9
4,731,328	-				-0.3
4,731,338	-				+0.0
4,731,338	-				+0.5
4,731,352	+				+0.4
4,731,353	-				-0.5
4,731,411	+				-0.4
4,731,411	+				-0.6
4,731,412	-				+0.7
4,731,412	-				+0.1
4,731,418	+				+0.1
4,731,418	+				+0.6
4,731,432	+				-1.2
4,731,432	+				+0.3
4,731,433	-				+0.5
4,731,436	+				+1.6
4,731,436	+				-1.8
4,731,436	+				-0.9
4,731,436	+				-1.9
4,731,436	+				+0.4
4,731,436	+				+0.2
4,731,437	-				+0.4
4,731,437	-				-1.3
4,731,437	-				-2.1
4,731,437	-				-1.8
4,731,437	-				+1.0
4,731,437	-				-0.6
4,731,437	-				-0.2
4,731,437	-				-0.9
4,731,437	-				+0.4
4,731,439	+				-2.3
4,731,477	-				-1.6
4,731,517	-				-0.3
4,731,539	+				-2.3
4,731,544	+				+0.6
4,731,544	+				-0.7
4,731,544	+				-0.2
4,731,618	+				+0.6
4,731,619	-				-0.5
4,731,628	+				-2.3
4,731,628	+				+0.2
4,731,629	-				-2.0
4,731,682	+				-1.0
4,731,682	+				-0.5
4,731,683	-				+0.5
4,731,725	-				+1.0
4,731,736	-				+1.5
4,731,765	+				+0.7
4,731,765	+				+1.3
4,731,765	+				+0.3
4,731,765	+				-0.5
4,731,766	-				+0.1
4,731,766	-				-1.6
4,731,766	-				-1.4
4,731,766	-				+0.6
4,731,766	-				+0.9
4,731,766	-				-1.0
4,731,766	-				-1.5
4,731,766	-				-1.3
4,731,766	-				+1.0
4,731,807	+		DDA3937_RS20825	0.11	+0.5
4,731,808	-		DDA3937_RS20825	0.11	-0.6
4,731,808	-		DDA3937_RS20825	0.11	+1.6
4,731,811	+		DDA3937_RS20825	0.11	+0.5
4,731,811	+		DDA3937_RS20825	0.11	-1.8
4,731,811	+		DDA3937_RS20825	0.11	-1.8
4,731,812	-		DDA3937_RS20825	0.11	+1.0
4,731,812	-		DDA3937_RS20825	0.11	+0.6
4,731,855	-				+1.8
4,731,855	-		DDA3937_RS20825	0.13	-1.8
4,731,858	+		DDA3937_RS20825	0.13	+1.4
4,731,858	+		DDA3937_RS20825	0.13	-0.2
4,731,859	-		DDA3937_RS20825	0.13	-0.5
4,731,859	-		DDA3937_RS20825	0.13	+0.6
4,731,859	-		DDA3937_RS20825	0.13	-0.8
4,731,882	+		DDA3937_RS20825	0.14	+0.4
4,731,882	+		DDA3937_RS20825	0.14	-0.5
4,731,882	+		DDA3937_RS20825	0.14	+0.7
4,731,882	+		DDA3937_RS20825	0.14	+1.0
4,731,882	+		DDA3937_RS20825	0.14	-2.8
4,731,883	-		DDA3937_RS20825	0.14	+1.8
4,731,883	-		DDA3937_RS20825	0.14	-0.5
4,731,883	-		DDA3937_RS20825	0.14	+0.4
4,731,883	-		DDA3937_RS20825	0.14	+0.1
4,731,886	-		DDA3937_RS20825	0.15	+0.3
4,731,901	-		DDA3937_RS20825	0.15	-0.2
4,731,955	+		DDA3937_RS20825	0.17	+0.2
4,731,988	-		DDA3937_RS20825	0.19	+2.5
4,731,996	+		DDA3937_RS20825	0.19	-0.5
4,731,996	+		DDA3937_RS20825	0.19	+0.3
4,731,997	-		DDA3937_RS20825	0.19	-0.5
4,731,997	-		DDA3937_RS20825	0.19	-2.0
4,731,997	-		DDA3937_RS20825	0.19	-0.4
4,731,997	-		DDA3937_RS20825	0.19	-3.1
4,731,997	-		DDA3937_RS20825	0.19	-0.5
4,731,997	-		DDA3937_RS20825	0.19	-0.0
4,731,997	-		DDA3937_RS20825	0.19	+1.8
4,731,997	-		DDA3937_RS20825	0.19	+1.9
4,731,997	-		DDA3937_RS20825	0.19	+1.0
4,731,997	-		DDA3937_RS20825	0.19	-0.0
4,731,998	+		DDA3937_RS20825	0.19	+0.7
4,731,998	+		DDA3937_RS20825	0.19	+0.2
4,731,999	-		DDA3937_RS20825	0.19	-1.3
4,732,000	+		DDA3937_RS20825	0.19	-0.5
4,732,000	+		DDA3937_RS20825	0.19	-0.9
4,732,000	+		DDA3937_RS20825	0.19	-0.2
4,732,001	-		DDA3937_RS20825	0.19	-0.0
4,732,001	-		DDA3937_RS20825	0.19	+0.3
4,732,001	-		DDA3937_RS20825	0.19	+0.2
4,732,001	-		DDA3937_RS20825	0.19	-1.4
4,732,001	-		DDA3937_RS20825	0.19	-1.8
4,732,048	-		DDA3937_RS20825	0.21	+0.8
4,732,053	+		DDA3937_RS20825	0.21	-1.1
4,732,053	+		DDA3937_RS20825	0.21	+0.4
4,732,054	-		DDA3937_RS20825	0.21	+0.5
4,732,054	-		DDA3937_RS20825	0.21	+0.5
4,732,057	-		DDA3937_RS20825	0.22	+0.3
4,732,057	-		DDA3937_RS20825	0.22	-0.1
4,732,057	-		DDA3937_RS20825	0.22	+1.3
4,732,057	-		DDA3937_RS20825	0.22	+1.0
4,732,084	+		DDA3937_RS20825	0.23	-0.7
4,732,138	+		DDA3937_RS20825	0.25	+0.1
4,732,138	+		DDA3937_RS20825	0.25	+0.3
4,732,141	+		DDA3937_RS20825	0.25	-1.7
4,732,141	+		DDA3937_RS20825	0.25	-0.5
4,732,142	-		DDA3937_RS20825	0.25	+0.8
4,732,142	-		DDA3937_RS20825	0.25	-1.0
4,732,142	-		DDA3937_RS20825	0.25	+0.2
4,732,142	-		DDA3937_RS20825	0.25	-0.7
4,732,210	-		DDA3937_RS20825	0.28	+0.0
4,732,210	-		DDA3937_RS20825	0.28	-0.3
4,732,210	-		DDA3937_RS20825	0.28	+1.0
4,732,224	+		DDA3937_RS20825	0.28	-0.9
4,732,225	-		DDA3937_RS20825	0.28	-0.3
4,732,263	+		DDA3937_RS20825	0.30	-2.6
4,732,263	+		DDA3937_RS20825	0.30	-0.8
4,732,319	-		DDA3937_RS20825	0.32	-0.5
4,732,319	-		DDA3937_RS20825	0.32	-0.8
4,732,319	-		DDA3937_RS20825	0.32	+0.3
4,732,501	+		DDA3937_RS20825	0.40	-0.8
4,732,501	+		DDA3937_RS20825	0.40	+0.2
4,732,502	-		DDA3937_RS20825	0.40	+1.0
4,732,554	-		DDA3937_RS20825	0.42	-0.7
4,732,554	-		DDA3937_RS20825	0.42	-0.3
4,732,557	+		DDA3937_RS20825	0.42	-0.0
4,732,557	+		DDA3937_RS20825	0.42	-0.6
4,732,584	+		DDA3937_RS20825	0.43	+0.2
4,732,584	+		DDA3937_RS20825	0.43	+0.8
4,732,585	-		DDA3937_RS20825	0.43	-1.7
4,732,585	-		DDA3937_RS20825	0.43	+0.9
4,732,585	-		DDA3937_RS20825	0.43	-1.8
4,732,585	-		DDA3937_RS20825	0.43	+0.8
4,732,585	-		DDA3937_RS20825	0.43	-0.7
4,732,632	+		DDA3937_RS20825	0.45	-0.1
4,732,653	+		DDA3937_RS20825	0.46	-0.0
4,732,653	+		DDA3937_RS20825	0.46	+0.9
4,732,656	+		DDA3937_RS20825	0.46	-0.6
4,732,656	+		DDA3937_RS20825	0.46	+0.5
4,732,657	-		DDA3937_RS20825	0.46	-1.5
4,732,657	-		DDA3937_RS20825	0.46	+4.1
4,732,659	+		DDA3937_RS20825	0.46	-0.8
4,732,659	+		DDA3937_RS20825	0.46	-1.0
4,732,660	-		DDA3937_RS20825	0.46	-1.0
4,732,660	-		DDA3937_RS20825	0.46	+0.9
4,732,664	-		DDA3937_RS20825	0.46	+1.2
4,732,664	-		DDA3937_RS20825	0.46	+0.2
4,732,743	+		DDA3937_RS20825	0.50	-1.5
4,732,746	+		DDA3937_RS20825	0.50	+1.5
4,732,747	-		DDA3937_RS20825	0.50	+1.1
4,732,756	+		DDA3937_RS20825	0.50	-0.1
4,732,829	-		DDA3937_RS20825	0.53	-1.8
4,732,845	+		DDA3937_RS20825	0.54	-0.9
4,732,845	+		DDA3937_RS20825	0.54	-0.8
4,732,846	-		DDA3937_RS20825	0.54	-0.0
4,732,849	-		DDA3937_RS20825	0.54	-2.8
4,732,860	+		DDA3937_RS20825	0.55	+0.1
4,732,864	+		DDA3937_RS20825	0.55	+0.5
4,732,864	+		DDA3937_RS20825	0.55	+1.8
4,732,865	-		DDA3937_RS20825	0.55	-0.3
4,732,865	-		DDA3937_RS20825	0.55	-0.6
4,732,915	+		DDA3937_RS20825	0.57	-1.8
4,732,965	+		DDA3937_RS20825	0.59	-0.1
4,732,966	-		DDA3937_RS20825	0.59	-0.3
4,733,015	-		DDA3937_RS20825	0.61	-0.1
4,733,015	-		DDA3937_RS20825	0.61	-0.5
4,733,104	-		DDA3937_RS20825	0.65	-1.4
4,733,104	-		DDA3937_RS20825	0.65	+0.3
4,733,104	-		DDA3937_RS20825	0.65	-1.4
4,733,140	+		DDA3937_RS20825	0.66	-1.4
4,733,213	-		DDA3937_RS20825	0.69	-0.2
4,733,221	-		DDA3937_RS20825	0.69	-1.5
4,733,223	+		DDA3937_RS20825	0.69	-0.5
4,733,224	-		DDA3937_RS20825	0.69	-1.6
4,733,239	-		DDA3937_RS20825	0.70	-0.0
4,733,315	+		DDA3937_RS20825	0.73	-1.7
4,733,315	+		DDA3937_RS20825	0.73	+0.2
4,733,315	+		DDA3937_RS20825	0.73	+0.6
4,733,316	-		DDA3937_RS20825	0.73	-1.0
4,733,316	-		DDA3937_RS20825	0.73	+1.8
4,733,316	-		DDA3937_RS20825	0.73	+0.0
4,733,316	-		DDA3937_RS20825	0.73	-2.3
4,733,316	-		DDA3937_RS20825	0.73	+0.2
4,733,321	+		DDA3937_RS20825	0.73	-2.4
4,733,321	+		DDA3937_RS20825	0.73	-1.0
4,733,322	-		DDA3937_RS20825	0.73	-2.1
4,733,386	-		DDA3937_RS20825	0.76	-0.0
4,733,416	-		DDA3937_RS20825	0.77	-0.1
4,733,435	+		DDA3937_RS20825	0.78	-0.1
4,733,436	-		DDA3937_RS20825	0.78	-2.0
4,733,436	-		DDA3937_RS20825	0.78	-1.7
4,733,436	-		DDA3937_RS20825	0.78	-1.0
4,733,440	-		DDA3937_RS20825	0.78	-1.7
4,733,469	+		DDA3937_RS20825	0.80	-0.1
4,733,495	+		DDA3937_RS20825	0.81	-2.9
4,733,513	+		DDA3937_RS20825	0.81	-0.8
4,733,513	+		DDA3937_RS20825	0.81	+0.7
4,733,527	-		DDA3937_RS20825	0.82	+0.2
4,733,533	+				+0.2
4,733,534	-		DDA3937_RS20825	0.82	-1.5
4,733,598	-		DDA3937_RS20825	0.85	-1.9
4,733,601	+		DDA3937_RS20825	0.85	+0.2
4,733,601	+		DDA3937_RS20825	0.85	-2.5
4,733,601	+		DDA3937_RS20825	0.85	-1.9
4,733,601	+		DDA3937_RS20825	0.85	+0.2
4,733,601	+		DDA3937_RS20825	0.85	-1.1
4,733,601	+		DDA3937_RS20825	0.85	-1.9
4,733,601	+		DDA3937_RS20825	0.85	-0.4
4,733,602	-		DDA3937_RS20825	0.85	-1.4
4,733,602	-		DDA3937_RS20825	0.85	-0.2
4,733,602	-		DDA3937_RS20825	0.85	-1.8
4,733,602	-		DDA3937_RS20825	0.85	-0.1
4,733,602	-		DDA3937_RS20825	0.85	-0.0
4,733,605	+				+1.1
4,733,605	+		DDA3937_RS20825	0.85	-0.2
4,733,605	+		DDA3937_RS20825	0.85	-1.5
4,733,605	+		DDA3937_RS20825	0.85	+0.4
4,733,605	+		DDA3937_RS20825	0.85	-0.5
4,733,605	+		DDA3937_RS20825	0.85	+0.8
4,733,606	-		DDA3937_RS20825	0.85	-0.3
4,733,606	-		DDA3937_RS20825	0.85	-1.0
4,733,606	-		DDA3937_RS20825	0.85	-1.7
4,733,607	+		DDA3937_RS20825	0.85	+0.8
4,733,608	-		DDA3937_RS20825	0.85	-1.3
4,733,616	+		DDA3937_RS20825	0.86	-0.7
4,733,617	-		DDA3937_RS20825	0.86	+2.4
4,733,633	+		DDA3937_RS20825	0.86	+1.2
4,733,634	-		DDA3937_RS20825	0.86	-1.3
4,733,638	-		DDA3937_RS20825	0.86	-0.2
4,733,638	-		DDA3937_RS20825	0.86	-0.7
4,733,678	+		DDA3937_RS20825	0.88	+0.8
4,733,684	+		DDA3937_RS20825	0.88	+0.8
4,733,684	+		DDA3937_RS20825	0.88	+0.2
4,733,691	+		DDA3937_RS20825	0.89	-1.7
4,733,728	-				-0.1
4,733,730	-				-3.1
4,733,730	-				-1.0
4,733,828	+				-0.5
4,733,828	+				+0.2
4,733,828	+				-0.5
4,733,829	-				+1.4
4,733,838	+				-0.9
4,733,852	+				-1.1
4,733,852	+				-1.4
4,733,852	+				-0.2
4,733,852	+				-0.0
4,733,852	+				-0.8
4,733,852	+				-1.3
4,733,852	+				-1.1
4,733,852	+				+1.7
4,733,852	+				-1.1
4,733,853	-				-0.9
4,733,853	-				-2.1
4,733,853	-				-0.2
4,733,853	-				-0.4
4,733,853	-				+0.8
4,733,853	-				-2.2
4,733,856	+				-0.0
4,733,856	+				+0.1
4,733,856	+				+0.5
4,733,856	+				-0.5
4,733,856	+				-1.3
4,733,856	+				+1.2
4,733,856	+				+1.8
4,733,856	+				-0.8
4,733,856	+				-1.0
4,733,856	+				-1.2
4,733,856	+				+0.8
4,733,856	+				-0.3
4,733,856	+				-0.5
4,733,856	+				+0.8
4,733,856	+				+0.3
4,733,856	+				-0.8
4,733,856	+				-0.0
4,733,857	-				-0.7
4,733,857	-				-0.4
4,733,857	-				+0.6
4,733,857	-				-2.2
4,733,857	-				-0.3
4,733,857	-				-0.0
4,733,857	-				+1.8
4,733,857	-				-1.8
4,733,857	-				-0.8
4,733,858	+				+0.4
4,733,858	+				+3.1
4,733,858	+				-0.2
4,733,858	+				+0.1
4,733,858	+				-0.6
4,733,858	+				+1.4
4,733,859	-				-1.0
4,733,859	-				-1.1
4,733,859	-				-1.1
4,733,859	-				-0.2
4,733,859	-				-1.4
4,733,859	-				-0.9
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