Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20815

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS20805 and DDA3937_RS20810 overlap by 13 nucleotidesDDA3937_RS20810 and DDA3937_RS20815 overlap by 44 nucleotidesDDA3937_RS20815 and DDA3937_RS20820 overlap by 8 nucleotides DDA3937_RS20805: DDA3937_RS20805 - DUF2807 domain-containing protein, at 4,727,259 to 4,727,900 _RS20805 DDA3937_RS20810: DDA3937_RS20810 - 4'-phosphopantetheinyl transferase superfamily protein, at 4,727,888 to 4,728,658 _RS20810 DDA3937_RS20815: DDA3937_RS20815 - two-component system sensor histidine kinase VfmI, at 4,728,615 to 4,729,934 _RS20815 DDA3937_RS20820: DDA3937_RS20820 - two-component system response regulator VfmH, at 4,729,927 to 4,731,327 _RS20820 Position (kb) 4728 4729 4730Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4727.672 kb on + strand, within DDA3937_RS20805at 4727.672 kb on + strand, within DDA3937_RS20805at 4727.672 kb on + strand, within DDA3937_RS20805at 4727.774 kb on - strand, within DDA3937_RS20805at 4727.855 kb on + strandat 4727.881 kb on + strandat 4727.881 kb on + strandat 4727.881 kb on + strandat 4727.882 kb on - strandat 4727.936 kb on + strandat 4727.937 kb on - strandat 4727.937 kb on - strandat 4727.937 kb on - strandat 4727.937 kb on - strandat 4727.971 kb on + strand, within DDA3937_RS20810at 4727.971 kb on + strand, within DDA3937_RS20810at 4727.972 kb on - strand, within DDA3937_RS20810at 4727.988 kb on + strand, within DDA3937_RS20810at 4727.988 kb on + strand, within DDA3937_RS20810at 4727.988 kb on + strand, within DDA3937_RS20810at 4727.989 kb on - strand, within DDA3937_RS20810at 4728.074 kb on - strand, within DDA3937_RS20810at 4728.147 kb on + strand, within DDA3937_RS20810at 4728.147 kb on + strand, within DDA3937_RS20810at 4728.148 kb on - strand, within DDA3937_RS20810at 4728.148 kb on - strand, within DDA3937_RS20810at 4728.148 kb on - strand, within DDA3937_RS20810at 4728.148 kb on - strand, within DDA3937_RS20810at 4728.148 kb on - strand, within DDA3937_RS20810at 4728.148 kb on - strand, within DDA3937_RS20810at 4728.263 kb on - strand, within DDA3937_RS20810at 4728.340 kb on + strand, within DDA3937_RS20810at 4728.340 kb on + strand, within DDA3937_RS20810at 4728.341 kb on - strand, within DDA3937_RS20810at 4728.353 kb on + strand, within DDA3937_RS20810at 4728.353 kb on + strand, within DDA3937_RS20810at 4728.419 kb on + strand, within DDA3937_RS20810at 4728.575 kb on + strand, within DDA3937_RS20810at 4728.575 kb on + strand, within DDA3937_RS20810at 4728.576 kb on - strand, within DDA3937_RS20810at 4728.576 kb on - strand, within DDA3937_RS20810at 4728.576 kb on - strand, within DDA3937_RS20810at 4728.576 kb on - strand, within DDA3937_RS20810at 4728.592 kb on - strandat 4728.592 kb on - strandat 4728.635 kb on + strandat 4728.635 kb on + strandat 4728.636 kb on - strandat 4728.636 kb on - strandat 4728.754 kb on + strand, within DDA3937_RS20815at 4728.754 kb on + strand, within DDA3937_RS20815at 4728.755 kb on - strand, within DDA3937_RS20815at 4728.755 kb on - strand, within DDA3937_RS20815at 4728.815 kb on + strand, within DDA3937_RS20815at 4728.974 kb on + strand, within DDA3937_RS20815at 4728.974 kb on + strand, within DDA3937_RS20815at 4728.974 kb on + strand, within DDA3937_RS20815at 4729.067 kb on - strand, within DDA3937_RS20815at 4729.154 kb on + strand, within DDA3937_RS20815at 4729.154 kb on + strand, within DDA3937_RS20815at 4729.302 kb on + strand, within DDA3937_RS20815at 4729.302 kb on + strand, within DDA3937_RS20815at 4729.303 kb on - strand, within DDA3937_RS20815at 4729.303 kb on - strand, within DDA3937_RS20815at 4729.303 kb on - strand, within DDA3937_RS20815at 4729.500 kb on - strand, within DDA3937_RS20815at 4729.500 kb on - strand, within DDA3937_RS20815at 4729.544 kb on + strand, within DDA3937_RS20815at 4729.545 kb on - strand, within DDA3937_RS20815at 4729.550 kb on + strand, within DDA3937_RS20815at 4729.550 kb on + strand, within DDA3937_RS20815at 4729.551 kb on - strand, within DDA3937_RS20815at 4729.560 kb on + strand, within DDA3937_RS20815at 4729.561 kb on - strand, within DDA3937_RS20815at 4729.561 kb on - strand, within DDA3937_RS20815at 4729.576 kb on + strand, within DDA3937_RS20815at 4729.576 kb on + strand, within DDA3937_RS20815at 4729.576 kb on + strand, within DDA3937_RS20815at 4729.576 kb on + strand, within DDA3937_RS20815at 4729.576 kb on + strand, within DDA3937_RS20815at 4729.576 kb on + strand, within DDA3937_RS20815at 4729.576 kb on + strand, within DDA3937_RS20815at 4729.576 kb on + strand, within DDA3937_RS20815at 4729.576 kb on + strand, within DDA3937_RS20815at 4729.576 kb on + strand, within DDA3937_RS20815at 4729.576 kb on + strand, within DDA3937_RS20815at 4729.576 kb on + strand, within DDA3937_RS20815at 4729.576 kb on + strand, within DDA3937_RS20815at 4729.576 kb on + strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strandat 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.577 kb on - strand, within DDA3937_RS20815at 4729.579 kb on + strand, within DDA3937_RS20815at 4729.579 kb on + strand, within DDA3937_RS20815at 4729.579 kb on + strand, within DDA3937_RS20815at 4729.579 kb on + strand, within DDA3937_RS20815at 4729.579 kb on + strand, within DDA3937_RS20815at 4729.579 kb on + strand, within DDA3937_RS20815at 4729.579 kb on + strand, within DDA3937_RS20815at 4729.579 kb on + strand, within DDA3937_RS20815at 4729.579 kb on + strand, within DDA3937_RS20815at 4729.580 kb on - strand, within DDA3937_RS20815at 4729.580 kb on - strand, within DDA3937_RS20815at 4729.580 kb on - strand, within DDA3937_RS20815at 4729.580 kb on - strand, within DDA3937_RS20815at 4729.580 kb on - strand, within DDA3937_RS20815at 4729.580 kb on - strand, within DDA3937_RS20815at 4729.580 kb on - strand, within DDA3937_RS20815at 4729.580 kb on - strand, within DDA3937_RS20815at 4729.580 kb on - strand, within DDA3937_RS20815at 4729.580 kb on - strand, within DDA3937_RS20815at 4729.580 kb on - strand, within DDA3937_RS20815at 4729.580 kb on - strand, within DDA3937_RS20815at 4729.665 kb on - strand, within DDA3937_RS20815at 4729.665 kb on - strand, within DDA3937_RS20815at 4729.665 kb on - strand, within DDA3937_RS20815at 4729.763 kb on + strand, within DDA3937_RS20815at 4729.763 kb on + strand, within DDA3937_RS20815at 4729.763 kb on + strand, within DDA3937_RS20815at 4729.764 kb on - strand, within DDA3937_RS20815at 4729.764 kb on - strand, within DDA3937_RS20815at 4729.764 kb on - strand, within DDA3937_RS20815at 4729.764 kb on - strand, within DDA3937_RS20815at 4729.764 kb on - strand, within DDA3937_RS20815at 4729.775 kb on - strand, within DDA3937_RS20815at 4729.819 kb on + strandat 4729.820 kb on - strandat 4729.846 kb on - strandat 4729.846 kb on - strandat 4729.846 kb on - strandat 4729.846 kb on - strandat 4729.846 kb on - strandat 4729.855 kb on + strandat 4729.856 kb on - strandat 4729.928 kb on + strandat 4729.929 kb on - strandat 4729.929 kb on - strandat 4729.938 kb on + strandat 4730.032 kb on - strandat 4730.229 kb on - strand, within DDA3937_RS20820at 4730.229 kb on - strand, within DDA3937_RS20820at 4730.259 kb on + strand, within DDA3937_RS20820at 4730.259 kb on + strand, within DDA3937_RS20820at 4730.277 kb on + strand, within DDA3937_RS20820at 4730.278 kb on - strand, within DDA3937_RS20820at 4730.282 kb on + strand, within DDA3937_RS20820at 4730.283 kb on - strand, within DDA3937_RS20820at 4730.362 kb on + strand, within DDA3937_RS20820at 4730.373 kb on + strand, within DDA3937_RS20820at 4730.374 kb on - strand, within DDA3937_RS20820at 4730.387 kb on + strand, within DDA3937_RS20820at 4730.387 kb on + strand, within DDA3937_RS20820at 4730.451 kb on + strand, within DDA3937_RS20820at 4730.452 kb on - strand, within DDA3937_RS20820at 4730.455 kb on - strand, within DDA3937_RS20820at 4730.517 kb on + strand, within DDA3937_RS20820at 4730.517 kb on + strand, within DDA3937_RS20820at 4730.517 kb on + strand, within DDA3937_RS20820

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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4,727,672 + DDA3937_RS20805 0.64 -0.7
4,727,672 + DDA3937_RS20805 0.64 -2.7
4,727,672 + DDA3937_RS20805 0.64 +1.1
4,727,774 - DDA3937_RS20805 0.80 -0.6
4,727,855 + -1.3
4,727,881 + +0.4
4,727,881 + +0.5
4,727,881 + -0.2
4,727,882 - +0.7
4,727,936 + +1.1
4,727,937 - -1.1
4,727,937 - -0.2
4,727,937 - +0.7
4,727,937 - -1.2
4,727,971 + DDA3937_RS20810 0.11 +2.2
4,727,971 + DDA3937_RS20810 0.11 +2.0
4,727,972 - DDA3937_RS20810 0.11 -0.5
4,727,988 + DDA3937_RS20810 0.13 -0.6
4,727,988 + DDA3937_RS20810 0.13 +1.6
4,727,988 + DDA3937_RS20810 0.13 -0.3
4,727,989 - DDA3937_RS20810 0.13 +0.6
4,728,074 - DDA3937_RS20810 0.24 -0.7
4,728,147 + DDA3937_RS20810 0.34 +1.0
4,728,147 + DDA3937_RS20810 0.34 -2.5
4,728,148 - DDA3937_RS20810 0.34 -0.9
4,728,148 - DDA3937_RS20810 0.34 +0.2
4,728,148 - DDA3937_RS20810 0.34 +3.8
4,728,148 - DDA3937_RS20810 0.34 -2.2
4,728,148 - DDA3937_RS20810 0.34 +2.8
4,728,148 - DDA3937_RS20810 0.34 +1.5
4,728,263 - DDA3937_RS20810 0.49 +2.8
4,728,340 + DDA3937_RS20810 0.59 -0.2
4,728,340 + DDA3937_RS20810 0.59 +0.2
4,728,341 - DDA3937_RS20810 0.59 -1.1
4,728,353 + DDA3937_RS20810 0.60 -1.7
4,728,353 + DDA3937_RS20810 0.60 -2.2
4,728,419 + DDA3937_RS20810 0.69 -1.2
4,728,575 + DDA3937_RS20810 0.89 -0.1
4,728,575 + DDA3937_RS20810 0.89 +1.1
4,728,576 - DDA3937_RS20810 0.89 -1.9
4,728,576 - DDA3937_RS20810 0.89 +2.3
4,728,576 - DDA3937_RS20810 0.89 +0.6
4,728,576 - DDA3937_RS20810 0.89 -1.2
4,728,592 - +0.3
4,728,592 - -0.6
4,728,635 + +0.3
4,728,635 + -0.3
4,728,636 - -0.7
4,728,636 - +0.9
4,728,754 + DDA3937_RS20815 0.11 +0.6
4,728,754 + DDA3937_RS20815 0.11 +0.4
4,728,755 - DDA3937_RS20815 0.11 -0.9
4,728,755 - DDA3937_RS20815 0.11 +0.2
4,728,815 + DDA3937_RS20815 0.15 +0.3
4,728,974 + DDA3937_RS20815 0.27 +0.1
4,728,974 + DDA3937_RS20815 0.27 +0.6
4,728,974 + DDA3937_RS20815 0.27 +1.2
4,729,067 - DDA3937_RS20815 0.34 +1.4
4,729,154 + DDA3937_RS20815 0.41 -0.2
4,729,154 + DDA3937_RS20815 0.41 -0.0
4,729,302 + DDA3937_RS20815 0.52 +1.1
4,729,302 + DDA3937_RS20815 0.52 +0.4
4,729,303 - DDA3937_RS20815 0.52 -0.3
4,729,303 - DDA3937_RS20815 0.52 -0.6
4,729,303 - DDA3937_RS20815 0.52 +0.9
4,729,500 - DDA3937_RS20815 0.67 +0.3
4,729,500 - DDA3937_RS20815 0.67 +1.1
4,729,544 + DDA3937_RS20815 0.70 +1.5
4,729,545 - DDA3937_RS20815 0.70 +0.6
4,729,550 + DDA3937_RS20815 0.71 +0.2
4,729,550 + DDA3937_RS20815 0.71 +0.1
4,729,551 - DDA3937_RS20815 0.71 -0.0
4,729,560 + DDA3937_RS20815 0.72 +0.6
4,729,561 - DDA3937_RS20815 0.72 +2.7
4,729,561 - DDA3937_RS20815 0.72 +0.4
4,729,576 + DDA3937_RS20815 0.73 +0.3
4,729,576 + DDA3937_RS20815 0.73 +0.6
4,729,576 + DDA3937_RS20815 0.73 +0.1
4,729,576 + DDA3937_RS20815 0.73 +0.4
4,729,576 + DDA3937_RS20815 0.73 +1.4
4,729,576 + DDA3937_RS20815 0.73 +0.6
4,729,576 + DDA3937_RS20815 0.73 +0.6
4,729,576 + DDA3937_RS20815 0.73 +0.6
4,729,576 + DDA3937_RS20815 0.73 -0.4
4,729,576 + DDA3937_RS20815 0.73 +3.7
4,729,576 + DDA3937_RS20815 0.73 +1.0
4,729,576 + DDA3937_RS20815 0.73 -2.2
4,729,576 + DDA3937_RS20815 0.73 +0.7
4,729,576 + DDA3937_RS20815 0.73 +2.6
4,729,577 - DDA3937_RS20815 0.73 +1.1
4,729,577 - DDA3937_RS20815 0.73 -0.8
4,729,577 - DDA3937_RS20815 0.73 +0.2
4,729,577 - DDA3937_RS20815 0.73 +0.6
4,729,577 - DDA3937_RS20815 0.73 +0.2
4,729,577 - DDA3937_RS20815 0.73 +0.6
4,729,577 - DDA3937_RS20815 0.73 -0.5
4,729,577 - DDA3937_RS20815 0.73 +0.4
4,729,577 - DDA3937_RS20815 0.73 +0.8
4,729,577 - DDA3937_RS20815 0.73 -0.1
4,729,577 - DDA3937_RS20815 0.73 +1.1
4,729,577 - DDA3937_RS20815 0.73 +1.5
4,729,577 - DDA3937_RS20815 0.73 +1.1
4,729,577 - DDA3937_RS20815 0.73 -0.4
4,729,577 - DDA3937_RS20815 0.73 +0.1
4,729,577 - +1.5
4,729,577 - DDA3937_RS20815 0.73 +1.2
4,729,577 - DDA3937_RS20815 0.73 +0.7
4,729,577 - DDA3937_RS20815 0.73 +1.6
4,729,577 - DDA3937_RS20815 0.73 +0.3
4,729,577 - DDA3937_RS20815 0.73 +1.0
4,729,577 - DDA3937_RS20815 0.73 +0.6
4,729,577 - DDA3937_RS20815 0.73 +2.7
4,729,579 + DDA3937_RS20815 0.73 +1.4
4,729,579 + DDA3937_RS20815 0.73 +0.4
4,729,579 + DDA3937_RS20815 0.73 +1.2
4,729,579 + DDA3937_RS20815 0.73 -0.8
4,729,579 + DDA3937_RS20815 0.73 +1.3
4,729,579 + DDA3937_RS20815 0.73 +0.1
4,729,579 + DDA3937_RS20815 0.73 +0.3
4,729,579 + DDA3937_RS20815 0.73 -1.1
4,729,579 + DDA3937_RS20815 0.73 +0.7
4,729,580 - DDA3937_RS20815 0.73 +0.2
4,729,580 - DDA3937_RS20815 0.73 -0.1
4,729,580 - DDA3937_RS20815 0.73 +0.8
4,729,580 - DDA3937_RS20815 0.73 +2.7
4,729,580 - DDA3937_RS20815 0.73 +1.5
4,729,580 - DDA3937_RS20815 0.73 +2.2
4,729,580 - DDA3937_RS20815 0.73 +1.6
4,729,580 - DDA3937_RS20815 0.73 +1.0
4,729,580 - DDA3937_RS20815 0.73 +1.7
4,729,580 - DDA3937_RS20815 0.73 +1.2
4,729,580 - DDA3937_RS20815 0.73 +0.1
4,729,580 - DDA3937_RS20815 0.73 +0.0
4,729,665 - DDA3937_RS20815 0.80 -0.3
4,729,665 - DDA3937_RS20815 0.80 +0.0
4,729,665 - DDA3937_RS20815 0.80 +0.5
4,729,763 + DDA3937_RS20815 0.87 +0.1
4,729,763 + DDA3937_RS20815 0.87 -0.5
4,729,763 + DDA3937_RS20815 0.87 +2.3
4,729,764 - DDA3937_RS20815 0.87 +2.5
4,729,764 - DDA3937_RS20815 0.87 +0.3
4,729,764 - DDA3937_RS20815 0.87 -0.2
4,729,764 - DDA3937_RS20815 0.87 +0.9
4,729,764 - DDA3937_RS20815 0.87 +1.5
4,729,775 - DDA3937_RS20815 0.88 +1.0
4,729,819 + +0.2
4,729,820 - +0.8
4,729,846 - -0.7
4,729,846 - -0.1
4,729,846 - +0.4
4,729,846 - +0.1
4,729,846 - -2.1
4,729,855 + +0.2
4,729,856 - +0.6
4,729,928 + +0.6
4,729,929 - +0.5
4,729,929 - +1.1
4,729,938 + -0.0
4,730,032 - +0.9
4,730,229 - DDA3937_RS20820 0.22 +0.8
4,730,229 - DDA3937_RS20820 0.22 +0.2
4,730,259 + DDA3937_RS20820 0.24 +0.1
4,730,259 + DDA3937_RS20820 0.24 -0.2
4,730,277 + DDA3937_RS20820 0.25 +1.2
4,730,278 - DDA3937_RS20820 0.25 +1.3
4,730,282 + DDA3937_RS20820 0.25 +0.6
4,730,283 - DDA3937_RS20820 0.25 -0.7
4,730,362 + DDA3937_RS20820 0.31 +0.2
4,730,373 + DDA3937_RS20820 0.32 +0.9
4,730,374 - DDA3937_RS20820 0.32 +0.3
4,730,387 + DDA3937_RS20820 0.33 -0.3
4,730,387 + DDA3937_RS20820 0.33 +2.8
4,730,451 + DDA3937_RS20820 0.37 +0.5
4,730,452 - DDA3937_RS20820 0.37 -1.1
4,730,455 - DDA3937_RS20820 0.38 +1.8
4,730,517 + DDA3937_RS20820 0.42 -1.8
4,730,517 + DDA3937_RS20820 0.42 +0.2
4,730,517 + DDA3937_RS20820 0.42 -0.7

Or see this region's nucleotide sequence