Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20295 and DDA3937_RS20300 are separated by 2 nucleotides DDA3937_RS20300 and DDA3937_RS20305 are separated by 113 nucleotides DDA3937_RS20305 and DDA3937_RS20310 are separated by 3 nucleotides DDA3937_RS20310 and DDA3937_RS20315 are separated by 3 nucleotides DDA3937_RS20315 and DDA3937_RS20320 are separated by 96 nucleotides
DDA3937_RS20295: DDA3937_RS20295 - porphobilinogen synthase, at 4,622,520 to 4,623,542
_RS20295
DDA3937_RS20300: DDA3937_RS20300 - 3'-5' ssDNA/RNA exonuclease TatD, at 4,623,545 to 4,624,339
_RS20300
DDA3937_RS20305: DDA3937_RS20305 - Sec-independent protein translocase subunit TatC, at 4,624,453 to 4,625,223
_RS20305
DDA3937_RS20310: DDA3937_RS20310 - Sec-independent protein translocase subunit TatB, at 4,625,227 to 4,625,802
_RS20310
DDA3937_RS20315: DDA3937_RS20315 - Sec-independent protein translocase subunit TatA, at 4,625,806 to 4,626,060
_RS20315
DDA3937_RS20320: DDA3937_RS20320 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 4,626,157 to 4,627,794
_RS20320
Position (kb) 4624
4625
4626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4623.652 kb on + strand, within DDA3937_RS20300 at 4623.652 kb on + strand, within DDA3937_RS20300 at 4623.652 kb on + strand, within DDA3937_RS20300 at 4623.652 kb on + strand, within DDA3937_RS20300 at 4623.653 kb on - strand, within DDA3937_RS20300 at 4623.701 kb on + strand, within DDA3937_RS20300 at 4623.702 kb on - strand, within DDA3937_RS20300 at 4623.702 kb on - strand, within DDA3937_RS20300 at 4623.702 kb on - strand, within DDA3937_RS20300 at 4623.702 kb on - strand, within DDA3937_RS20300 at 4623.702 kb on - strand, within DDA3937_RS20300 at 4623.702 kb on - strand, within DDA3937_RS20300 at 4623.720 kb on + strand, within DDA3937_RS20300 at 4623.720 kb on + strand, within DDA3937_RS20300 at 4623.721 kb on - strand, within DDA3937_RS20300 at 4623.931 kb on + strand, within DDA3937_RS20300 at 4623.932 kb on - strand, within DDA3937_RS20300 at 4623.932 kb on - strand, within DDA3937_RS20300 at 4624.177 kb on - strand, within DDA3937_RS20300 at 4624.242 kb on - strand, within DDA3937_RS20300 at 4624.242 kb on - strand, within DDA3937_RS20300 at 4624.280 kb on + strand at 4624.420 kb on + strand at 4624.420 kb on + strand at 4624.421 kb on - strand at 4624.421 kb on - strand at 4624.517 kb on + strand at 4624.518 kb on - strand at 4624.557 kb on - strand, within DDA3937_RS20305 at 4624.641 kb on - strand, within DDA3937_RS20305 at 4624.641 kb on - strand, within DDA3937_RS20305 at 4624.763 kb on + strand, within DDA3937_RS20305 at 4624.764 kb on - strand, within DDA3937_RS20305 at 4624.764 kb on - strand, within DDA3937_RS20305 at 4624.764 kb on - strand, within DDA3937_RS20305 at 4624.848 kb on - strand, within DDA3937_RS20305 at 4624.958 kb on + strand, within DDA3937_RS20305 at 4624.958 kb on + strand, within DDA3937_RS20305 at 4624.959 kb on - strand, within DDA3937_RS20305 at 4624.997 kb on - strand, within DDA3937_RS20305 at 4624.997 kb on - strand, within DDA3937_RS20305 at 4625.001 kb on + strand, within DDA3937_RS20305 at 4625.002 kb on - strand, within DDA3937_RS20305 at 4625.099 kb on + strand at 4625.100 kb on - strand, within DDA3937_RS20305 at 4625.100 kb on - strand, within DDA3937_RS20305 at 4625.100 kb on - strand, within DDA3937_RS20305 at 4625.100 kb on - strand, within DDA3937_RS20305 at 4625.100 kb on - strand, within DDA3937_RS20305 at 4625.224 kb on - strand at 4625.224 kb on - strand at 4625.224 kb on - strand at 4625.224 kb on - strand at 4625.785 kb on - strand at 4625.808 kb on - strand at 4625.820 kb on + strand at 4625.821 kb on - strand at 4625.821 kb on - strand at 4625.821 kb on - strand at 4625.821 kb on - strand at 4625.953 kb on - strand, within DDA3937_RS20315 at 4625.953 kb on - strand, within DDA3937_RS20315 at 4625.953 kb on - strand, within DDA3937_RS20315 at 4626.011 kb on - strand, within DDA3937_RS20315 at 4626.046 kb on - strand at 4626.048 kb on + strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.049 kb on - strand at 4626.069 kb on + strand at 4626.070 kb on - strand at 4626.070 kb on - strand at 4626.070 kb on - strand at 4626.078 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,623,652 + DDA3937_RS20300 0.13 +0.4 4,623,652 + DDA3937_RS20300 0.13 -0.9 4,623,652 + DDA3937_RS20300 0.13 +0.9 4,623,652 + DDA3937_RS20300 0.13 -1.7 4,623,653 - DDA3937_RS20300 0.14 -0.1 4,623,701 + DDA3937_RS20300 0.20 -0.8 4,623,702 - DDA3937_RS20300 0.20 -2.3 4,623,702 - DDA3937_RS20300 0.20 +0.2 4,623,702 - DDA3937_RS20300 0.20 -0.5 4,623,702 - DDA3937_RS20300 0.20 -1.1 4,623,702 - DDA3937_RS20300 0.20 -0.6 4,623,702 - DDA3937_RS20300 0.20 -0.5 4,623,720 + DDA3937_RS20300 0.22 -1.4 4,623,720 + DDA3937_RS20300 0.22 -1.6 4,623,721 - DDA3937_RS20300 0.22 +0.7 4,623,931 + DDA3937_RS20300 0.49 -1.7 4,623,932 - DDA3937_RS20300 0.49 -0.3 4,623,932 - DDA3937_RS20300 0.49 -1.0 4,624,177 - DDA3937_RS20300 0.79 -1.1 4,624,242 - DDA3937_RS20300 0.88 -0.2 4,624,242 - DDA3937_RS20300 0.88 +0.2 4,624,280 + -1.3 4,624,420 + -1.2 4,624,420 + -1.3 4,624,421 - +0.3 4,624,421 - -1.1 4,624,517 + -0.8 4,624,518 - -0.8 4,624,557 - DDA3937_RS20305 0.13 +0.2 4,624,641 - DDA3937_RS20305 0.24 -1.7 4,624,641 - DDA3937_RS20305 0.24 -0.6 4,624,763 + DDA3937_RS20305 0.40 -0.4 4,624,764 - DDA3937_RS20305 0.40 -3.0 4,624,764 - DDA3937_RS20305 0.40 +2.7 4,624,764 - DDA3937_RS20305 0.40 -2.0 4,624,848 - DDA3937_RS20305 0.51 -0.7 4,624,958 + DDA3937_RS20305 0.65 -0.3 4,624,958 + DDA3937_RS20305 0.65 -1.3 4,624,959 - DDA3937_RS20305 0.66 -1.5 4,624,997 - DDA3937_RS20305 0.71 -0.3 4,624,997 - DDA3937_RS20305 0.71 -1.6 4,625,001 + DDA3937_RS20305 0.71 +1.5 4,625,002 - DDA3937_RS20305 0.71 -0.3 4,625,099 + -0.3 4,625,100 - DDA3937_RS20305 0.84 -1.3 4,625,100 - DDA3937_RS20305 0.84 +0.4 4,625,100 - DDA3937_RS20305 0.84 -0.3 4,625,100 - DDA3937_RS20305 0.84 +0.7 4,625,100 - DDA3937_RS20305 0.84 -2.3 4,625,224 - -1.5 4,625,224 - -1.1 4,625,224 - -0.9 4,625,224 - -0.8 4,625,785 - -0.2 4,625,808 - -1.4 4,625,820 + +0.1 4,625,821 - -0.4 4,625,821 - -1.1 4,625,821 - -0.7 4,625,821 - +0.8 4,625,953 - DDA3937_RS20315 0.58 -0.5 4,625,953 - DDA3937_RS20315 0.58 +0.4 4,625,953 - DDA3937_RS20315 0.58 +1.9 4,626,011 - DDA3937_RS20315 0.80 +3.3 4,626,046 - -0.6 4,626,048 + -0.8 4,626,049 - -0.2 4,626,049 - -1.4 4,626,049 - -0.8 4,626,049 - -0.5 4,626,049 - +2.2 4,626,049 - -0.4 4,626,049 - -0.7 4,626,049 - -1.4 4,626,049 - +0.9 4,626,049 - -2.6 4,626,069 + -2.2 4,626,070 - -2.6 4,626,070 - +1.5 4,626,070 - -1.2 4,626,078 - +2.7
Or see this region's nucleotide sequence