Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18635

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,259,313	-				-1.1
4,259,334	-				-0.9
4,259,334	-				-1.6
4,259,338	-				+0.7
4,259,338	-				+3.3
4,259,338	-				+0.2
4,259,452	-		DDA3937_RS18635	0.10	-1.2
4,259,452	-		DDA3937_RS18635	0.10	-2.1
4,259,454	-		DDA3937_RS18635	0.10	-0.5
4,259,595	-		DDA3937_RS18635	0.19	+0.3
4,259,642	+		DDA3937_RS18635	0.22	-1.2
4,259,643	-		DDA3937_RS18635	0.22	+0.8
4,259,643	-		DDA3937_RS18635	0.22	-0.2
4,259,994	-		DDA3937_RS18635	0.45	-1.0
4,260,076	+		DDA3937_RS18635	0.51	-0.6
4,260,077	-		DDA3937_RS18635	0.51	+0.2
4,260,244	+		DDA3937_RS18635	0.61	-0.1
4,260,245	-		DDA3937_RS18635	0.61	-1.4
4,260,247	+		DDA3937_RS18635	0.62	-0.7
4,260,247	+		DDA3937_RS18635	0.62	-0.8
4,260,247	+		DDA3937_RS18635	0.62	-0.3
4,260,247	+		DDA3937_RS18635	0.62	-0.1
4,260,248	-		DDA3937_RS18635	0.62	-0.6
4,260,322	+		DDA3937_RS18635	0.66	-0.8
4,260,323	-		DDA3937_RS18635	0.67	+0.7
4,260,378	+		DDA3937_RS18635	0.70	-0.2
4,260,378	+		DDA3937_RS18635	0.70	-0.8
4,260,378	+		DDA3937_RS18635	0.70	+0.1
4,260,597	+		DDA3937_RS18635	0.84	-1.2
4,260,597	+		DDA3937_RS18635	0.84	-1.0
4,260,597	+		DDA3937_RS18635	0.84	+0.7
4,260,597	+		DDA3937_RS18635	0.84	+1.2
4,260,598	-		DDA3937_RS18635	0.84	-1.8
4,260,703	+				-1.2
4,260,703	+				+0.3
4,260,709	+				-0.5
4,260,709	+				-1.9
4,260,709	+				-1.2
4,260,709	+				-0.7
4,260,710	-				-0.6
4,260,710	-				+0.0
4,260,710	-				+0.0
4,260,710	-				-0.6
4,260,710	-				-1.3
4,260,714	-				-0.9
4,260,729	+				-0.2
4,260,730	-				+1.3
4,260,730	-				+0.8
4,260,730	-				-1.5
4,260,816	+				-1.7
4,260,816	+				+0.7
4,260,863	+				-0.5
4,260,863	+				-0.8
4,260,878	+				-2.3
4,260,878	+				+0.7
4,260,878	+				+1.5
4,260,878	+				-0.3
4,260,879	-				-1.3
4,260,879	-				-1.6
4,260,879	-				+0.4
4,260,879	-				-0.7
4,260,986	+				-0.7
4,260,986	+				+1.2
4,260,987	-				-0.2
4,260,987	-				-0.3
4,260,987	-				-1.6
4,260,987	-				+0.1
4,260,995	+				-0.3
4,260,995	+				+0.1
4,260,995	+				-0.3
4,260,995	+				-1.3
4,260,995	+				+2.6
4,260,995	+				+0.4
4,260,996	-				-0.2
4,260,996	-				-0.9
4,260,996	-				+2.7
4,260,996	-				-0.4
4,260,996	-				-0.3
4,260,996	-				-1.4
4,260,996	-				+0.0
4,260,996	-				-0.2
4,261,023	+				+1.3
4,261,023	+				+1.4
4,261,023	+				+0.2
4,261,023	+				-0.1
4,261,024	-				-0.2
4,261,024	-				+1.3
4,261,028	+				+0.1
4,261,153	-		DDA3937_RS18640	0.24	+0.4
4,261,204	-		DDA3937_RS18640	0.29	+0.5
4,261,204	-		DDA3937_RS18640	0.29	-0.8
4,261,300	+		DDA3937_RS18640	0.40	+0.7
4,261,300	+		DDA3937_RS18640	0.40	-1.2
4,261,301	-		DDA3937_RS18640	0.41	-2.3
4,261,301	-		DDA3937_RS18640	0.41	-0.9
4,261,302	+		DDA3937_RS18640	0.41	-0.2
4,261,302	+		DDA3937_RS18640	0.41	-0.9
4,261,303	-		DDA3937_RS18640	0.41	+0.0
4,261,303	-		DDA3937_RS18640	0.41	+0.4
4,261,336	+		DDA3937_RS18640	0.45	-0.6
4,261,336	+		DDA3937_RS18640	0.45	+0.1
4,261,336	+		DDA3937_RS18640	0.45	-0.8
4,261,336	+		DDA3937_RS18640	0.45	+0.3
4,261,337	-		DDA3937_RS18640	0.45	-0.5
4,261,337	-		DDA3937_RS18640	0.45	+1.2
4,261,337	-		DDA3937_RS18640	0.45	-0.2
4,261,341	+		DDA3937_RS18640	0.45	+0.4
4,261,341	+		DDA3937_RS18640	0.45	+0.1
4,261,342	-		DDA3937_RS18640	0.45	+2.4
4,261,342	-		DDA3937_RS18640	0.45	-0.1
4,261,342	-		DDA3937_RS18640	0.45	+0.1
4,261,342	-		DDA3937_RS18640	0.45	+0.1
4,261,402	+		DDA3937_RS18640	0.52	+0.7
4,261,402	+		DDA3937_RS18640	0.52	-0.9
4,261,402	+		DDA3937_RS18640	0.52	-0.8
4,261,402	+		DDA3937_RS18640	0.52	-0.8
4,261,402	+		DDA3937_RS18640	0.52	-0.9
4,261,402	+		DDA3937_RS18640	0.52	-0.2
4,261,403	-		DDA3937_RS18640	0.52	+3.0
4,261,403	-		DDA3937_RS18640	0.52	+0.1
4,261,403	-		DDA3937_RS18640	0.52	-0.5
4,261,403	-		DDA3937_RS18640	0.52	+0.5
4,261,412	-		DDA3937_RS18640	0.53	+2.3
4,261,426	+		DDA3937_RS18640	0.55	+0.3
4,261,437	-		DDA3937_RS18640	0.56	+0.2
4,261,437	-		DDA3937_RS18640	0.56	-0.9
4,261,440	+		DDA3937_RS18640	0.56	+1.2
4,261,441	-		DDA3937_RS18640	0.57	+0.5
4,261,441	-		DDA3937_RS18640	0.57	-1.3
4,261,455	+		DDA3937_RS18640	0.58	-0.6
4,261,523	+		DDA3937_RS18640	0.66	-0.5
4,261,523	+		DDA3937_RS18640	0.66	+3.8
4,261,523	+		DDA3937_RS18640	0.66	-0.2
4,261,548	+		DDA3937_RS18640	0.69	+0.7
4,261,549	-		DDA3937_RS18640	0.69	-0.2
4,261,549	-		DDA3937_RS18640	0.69	+0.5
4,261,549	-		DDA3937_RS18640	0.69	-0.9
4,261,549	-		DDA3937_RS18640	0.69	-0.7
4,261,549	-		DDA3937_RS18640	0.69	+0.3
4,261,549	-		DDA3937_RS18640	0.69	-1.6
4,261,549	-		DDA3937_RS18640	0.69	-0.4
4,261,549	-		DDA3937_RS18640	0.69	+0.3
4,261,549	-		DDA3937_RS18640	0.69	-0.4
4,261,549	-		DDA3937_RS18640	0.69	-1.3
4,261,550	+		DDA3937_RS18640	0.69	-1.3
4,261,550	+		DDA3937_RS18640	0.69	+0.5
4,261,551	-		DDA3937_RS18640	0.69	-1.5
4,261,551	-		DDA3937_RS18640	0.69	+0.9
4,261,551	-				+3.2
4,261,551	-				-0.7
4,261,603	+		DDA3937_RS18640	0.75	-0.5
4,261,623	+		DDA3937_RS18640	0.77	-0.8
4,261,648	+		DDA3937_RS18640	0.80	-0.6
4,261,649	-		DDA3937_RS18640	0.80	-0.9
4,261,649	-		DDA3937_RS18640	0.80	+1.7
4,261,649	-		DDA3937_RS18640	0.80	-0.1
4,261,649	-		DDA3937_RS18640	0.80	-0.2
4,261,692	+		DDA3937_RS18640	0.85	-0.5
4,261,692	+		DDA3937_RS18640	0.85	-0.8
4,261,693	-		DDA3937_RS18640	0.85	+2.0
4,261,693	-		DDA3937_RS18640	0.85	-0.3
4,261,693	-		DDA3937_RS18640	0.85	-2.0
4,261,693	-		DDA3937_RS18640	0.85	-1.0
4,261,725	+		DDA3937_RS18640	0.89	-1.5
4,261,725	+		DDA3937_RS18640	0.89	+0.1
4,261,725	+		DDA3937_RS18640	0.89	+0.4
4,261,725	+		DDA3937_RS18640	0.89	-0.9
4,261,725	+		DDA3937_RS18640	0.89	-0.7
4,261,725	+		DDA3937_RS18640	0.89	+0.5
4,261,725	+		DDA3937_RS18640	0.89	+0.1
4,261,725	+		DDA3937_RS18640	0.89	-0.8
4,261,725	+		DDA3937_RS18640	0.89	-1.7
4,261,725	+		DDA3937_RS18640	0.89	-0.9
4,261,725	+		DDA3937_RS18640	0.89	-0.8
4,261,726	-		DDA3937_RS18640	0.89	+0.9
4,261,726	-		DDA3937_RS18640	0.89	-1.3
4,261,726	-		DDA3937_RS18640	0.89	-0.6
4,261,726	-		DDA3937_RS18640	0.89	-2.3
4,261,726	-		DDA3937_RS18640	0.89	+0.1
4,261,726	-		DDA3937_RS18640	0.89	-1.3
4,261,726	-		DDA3937_RS18640	0.89	-0.3
4,261,750	+				-2.8
4,261,750	+				-1.3
4,261,750	+				-0.5
4,261,751	-				+3.1
4,261,762	+				+1.7
4,261,762	+				-0.8
4,261,762	+				-0.3
4,261,762	+				-0.3