Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17375

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,954,326	+		DDA3937_RS17370	0.58	-0.2
3,954,367	+		DDA3937_RS17370	0.62	-0.5
3,954,368	-		DDA3937_RS17370	0.62	+0.3
3,954,380	-		DDA3937_RS17370	0.64	-0.8
3,954,430	+		DDA3937_RS17370	0.69	+1.5
3,954,431	-		DDA3937_RS17370	0.69	-0.2
3,954,431	-		DDA3937_RS17370	0.69	-0.1
3,954,545	-		DDA3937_RS17370	0.82	-0.1
3,954,545	-		DDA3937_RS17370	0.82	-1.6
3,954,574	+		DDA3937_RS17370	0.85	-0.6
3,954,574	+		DDA3937_RS17370	0.85	-1.0
3,954,574	+		DDA3937_RS17370	0.85	-0.6
3,954,575	-		DDA3937_RS17370	0.85	-1.0
3,954,575	-		DDA3937_RS17370	0.85	-0.5
3,954,575	-		DDA3937_RS17370	0.85	-0.8
3,954,578	+		DDA3937_RS17370	0.86	+0.9
3,954,578	+		DDA3937_RS17370	0.86	-1.1
3,954,578	+		DDA3937_RS17370	0.86	-0.9
3,954,578	+		DDA3937_RS17370	0.86	+0.2
3,954,578	+		DDA3937_RS17370	0.86	-0.3
3,954,578	+		DDA3937_RS17370	0.86	-0.2
3,954,579	-		DDA3937_RS17370	0.86	-0.6
3,954,579	-		DDA3937_RS17370	0.86	+1.7
3,954,579	-		DDA3937_RS17370	0.86	-2.6
3,954,636	-				-1.3
3,954,638	-				-0.1
3,954,664	+				-1.3
3,954,665	-				-0.9
3,954,665	-				-1.1
3,954,680	+				-0.1
3,954,700	+				+3.1
3,954,700	+				-0.6
3,954,700	+				+1.1
3,954,700	+				-0.5
3,954,700	+				-1.4
3,954,701	-				+0.1
3,954,701	-				+1.2
3,954,701	-				-0.2
3,954,701	-				+0.1
3,954,701	-				-0.3
3,954,747	+				-1.7
3,954,747	+				-2.2
3,954,747	+				+0.5
3,954,747	+				+0.7
3,954,748	-				-0.3
3,954,748	-				-1.0
3,954,748	-				-1.1
3,954,748	-				+1.0
3,954,748	-				-2.6
3,954,749	+				-0.5
3,954,749	+				-0.5
3,954,749	+				+1.8
3,954,749	+				+0.1
3,954,749	+				+0.6
3,954,749	+				-0.6
3,954,749	+				+5.9
3,954,750	-				+2.1
3,954,750	-				+2.4
3,954,750	-				+0.7
3,954,750	-				-0.5
3,954,751	+				+0.7
3,954,751	+				-0.6
3,954,751	+				+0.1
3,954,752	-				+0.1
3,954,752	-				-0.6
3,954,752	-				-0.1
3,954,752	-				-0.8
3,954,752	-				-0.3
3,954,752	-				-1.1
3,954,777	+				-0.8
3,954,778	-				-0.6
3,954,844	+				+1.2
3,954,844	+				-1.1
3,954,845	-				+0.7
3,954,845	-				-0.9
3,954,845	-				-0.6
3,954,845	-				+0.5
3,954,858	+				+0.3
3,954,858	+				-0.1
3,954,859	-				+0.4
3,954,862	+				-1.6
3,954,862	+				-0.1
3,954,876	-				-2.3
3,954,894	-				-0.4
3,954,894	-				+0.9
3,954,894	-				+1.3
3,954,894	-				-2.2
3,954,894	-				-0.6
3,954,999	+				+0.1
3,954,999	+				+1.5
3,955,007	+				-1.0
3,955,136	+				+1.8
3,955,136	+				-0.3
3,955,136	+				-1.9
3,955,136	+				+0.4
3,955,136	+				+0.2
3,955,137	-				+1.0
3,955,137	-				-0.2
3,955,137	-				+3.6
3,955,137	-				-0.6
3,955,137	-				-0.7
3,955,137	-				-0.3
3,955,142	+				-0.9
3,955,142	+				+0.7
3,955,142	+				-0.7
3,955,143	-				-1.4
3,955,143	-				+0.5
3,955,143	-				-0.5
3,955,143	-				+1.4
3,955,143	-				-2.6
3,955,143	-				+0.4
3,955,143	-				-0.4
3,955,143	-				-0.8
3,955,145	+				-0.2
3,955,145	+				-1.6
3,955,145	+				-0.8
3,955,146	-				-0.5
3,955,146	-				-1.9
3,955,146	-				-1.0
3,955,146	-				-1.5
3,955,146	-				+0.3
3,955,146	-				-0.3
3,955,146	-				+0.5
3,955,146	-				-2.9
3,955,146	-				-0.6
3,955,213	+				-0.4
3,955,214	-				-2.1
3,955,245	+				+2.1
3,955,343	+		DDA3937_RS17375	0.11	-0.1
3,955,343	+		DDA3937_RS17375	0.11	-1.5
3,955,343	+		DDA3937_RS17375	0.11	-1.1
3,955,344	-		DDA3937_RS17375	0.11	+0.5
3,955,344	-		DDA3937_RS17375	0.11	-0.1
3,955,344	-		DDA3937_RS17375	0.11	-1.1
3,955,344	-		DDA3937_RS17375	0.11	+0.8
3,955,366	+		DDA3937_RS17375	0.13	-2.2
3,955,430	+		DDA3937_RS17375	0.19	-0.2
3,955,430	+		DDA3937_RS17375	0.19	-0.1
3,955,525	+		DDA3937_RS17375	0.29	-1.1
3,955,963	+		DDA3937_RS17375	0.72	-0.5
3,955,963	+		DDA3937_RS17375	0.72	+0.5
3,955,964	-		DDA3937_RS17375	0.72	+0.5
3,955,964	-		DDA3937_RS17375	0.72	+1.0
3,956,031	+		DDA3937_RS17375	0.79	-2.2
3,956,032	-		DDA3937_RS17375	0.79	+2.9
3,956,072	-		DDA3937_RS17375	0.83	-2.5
3,956,232	+				+0.2
3,956,242	+				-1.3
3,956,245	+				+0.5
3,956,245	+				-0.3
3,956,246	-				-2.1
3,956,246	-				+0.1
3,956,246	-				-1.2
3,956,279	+				-0.5
3,956,280	-				-0.6
3,956,280	-				+0.3
3,956,280	-				+2.7
3,956,319	+				+1.5
3,956,320	-				-0.6
3,956,320	-				+0.3
3,956,322	+				-0.2
3,956,322	+				+0.4
3,956,323	-				-1.1
3,956,323	-				-1.1
3,956,323	-				+0.0
3,956,323	-				+0.1
3,956,323	-				-1.3
3,956,323	-				+0.2
3,956,347	+				-1.1
3,956,347	+				-2.4
3,956,347	+				-1.9
3,956,348	-				-0.7
3,956,348	-				-0.9
3,956,348	-				+0.2
3,956,348	-				-0.9
3,956,384	-				+0.8
3,956,407	+				-0.6
3,956,407	+				+0.3
3,956,476	-				-0.5
3,956,481	-				-1.1
3,956,490	-				+0.4
3,956,530	+				-2.1
3,956,582	+		DDA3937_RS17380	0.12	-0.9
3,956,607	-		DDA3937_RS17380	0.15	+1.9
3,956,615	+		DDA3937_RS17380	0.16	+1.4
3,956,615	+		DDA3937_RS17380	0.16	-0.3
3,956,652	+		DDA3937_RS17380	0.21	-0.8
3,956,653	-		DDA3937_RS17380	0.21	+0.8
3,956,664	+		DDA3937_RS17380	0.23	-0.3
3,956,665	-		DDA3937_RS17380	0.23	-0.2
3,956,668	+		DDA3937_RS17380	0.24	-1.1
3,956,669	-		DDA3937_RS17380	0.24	+0.0
3,956,669	-		DDA3937_RS17380	0.24	-1.4
3,956,669	-		DDA3937_RS17380	0.24	-0.2
3,956,742	+		DDA3937_RS17380	0.34	+1.5
3,956,802	-		DDA3937_RS17380	0.42	-0.1
3,956,802	-		DDA3937_RS17380	0.42	+0.1
3,956,802	-		DDA3937_RS17380	0.42	-2.1
3,956,802	-		DDA3937_RS17380	0.42	+0.4
3,956,802	-		DDA3937_RS17380	0.42	+0.7
3,956,802	-		DDA3937_RS17380	0.42	-0.2
3,956,804	+		DDA3937_RS17380	0.43	-0.5
3,956,805	-		DDA3937_RS17380	0.43	-0.4
3,956,805	-		DDA3937_RS17380	0.43	+0.3
3,956,915	+		DDA3937_RS17380	0.58	-1.4
3,956,916	-		DDA3937_RS17380	0.58	+0.4
3,956,916	-		DDA3937_RS17380	0.58	-0.5
3,956,916	-		DDA3937_RS17380	0.58	-0.6
3,956,919	+		DDA3937_RS17380	0.59	-1.3
3,956,919	+		DDA3937_RS17380	0.59	-0.6
3,956,920	-		DDA3937_RS17380	0.59	-2.6
3,956,920	-		DDA3937_RS17380	0.59	+0.2
3,956,952	-		DDA3937_RS17380	0.63	-0.3
3,956,960	+		DDA3937_RS17380	0.64	+4.4
3,956,961	-		DDA3937_RS17380	0.64	+0.1
3,956,964	+		DDA3937_RS17380	0.65	+1.5
3,956,975	+		DDA3937_RS17380	0.66	+0.4
3,956,976	-		DDA3937_RS17380	0.67	-1.9
3,957,028	-		DDA3937_RS17380	0.74	-1.3
3,957,085	+		DDA3937_RS17380	0.82	-0.7
3,957,086	-		DDA3937_RS17380	0.82	-0.2
3,957,090	+		DDA3937_RS17380	0.82	-0.1
3,957,090	+		DDA3937_RS17380	0.82	-0.1
3,957,091	-		DDA3937_RS17380	0.83	-0.5
3,957,091	-		DDA3937_RS17380	0.83	-0.3
3,957,103	-		DDA3937_RS17380	0.84	-0.6
3,957,164	-				+1.7
3,957,174	+				-0.4
3,957,175	-				+0.9
3,957,175	-				+0.7
3,957,175	-				-1.5