Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17170

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,912,776	+				-0.7
3,912,789	+				-1.1
3,912,790	-				-1.5
3,912,790	-				-2.7
3,912,806	+				-0.8
3,913,023	+		DDA3937_RS17165	0.31	-1.0
3,913,023	+		DDA3937_RS17165	0.31	+2.2
3,913,024	-		DDA3937_RS17165	0.31	-0.5
3,913,024	-		DDA3937_RS17165	0.31	-1.5
3,913,024	-		DDA3937_RS17165	0.31	+0.6
3,913,055	+		DDA3937_RS17165	0.36	-2.4
3,913,055	+		DDA3937_RS17165	0.36	-1.3
3,913,055	+		DDA3937_RS17165	0.36	+2.1
3,913,055	+		DDA3937_RS17165	0.36	-1.7
3,913,056	-		DDA3937_RS17165	0.36	-0.1
3,913,056	-		DDA3937_RS17165	0.36	-2.5
3,913,056	-		DDA3937_RS17165	0.36	-0.3
3,913,071	+		DDA3937_RS17165	0.38	+0.2
3,913,141	+		DDA3937_RS17165	0.49	+0.6
3,913,141	+		DDA3937_RS17165	0.49	+1.5
3,913,141	+				-0.5
3,913,141	+		DDA3937_RS17165	0.49	-1.1
3,913,141	+		DDA3937_RS17165	0.49	-1.3
3,913,141	+		DDA3937_RS17165	0.49	-1.3
3,913,242	+		DDA3937_RS17165	0.65	-0.7
3,913,242	+		DDA3937_RS17165	0.65	-0.4
3,913,242	+		DDA3937_RS17165	0.65	+0.1
3,913,242	+		DDA3937_RS17165	0.65	-1.1
3,913,242	+		DDA3937_RS17165	0.65	+0.1
3,913,242	+		DDA3937_RS17165	0.65	-0.5
3,913,242	+		DDA3937_RS17165	0.65	+0.2
3,913,243	-		DDA3937_RS17165	0.65	-1.4
3,913,243	-		DDA3937_RS17165	0.65	+0.1
3,913,243	-		DDA3937_RS17165	0.65	-0.3
3,913,244	+		DDA3937_RS17165	0.66	-0.4
3,913,244	+		DDA3937_RS17165	0.66	-0.8
3,913,245	-		DDA3937_RS17165	0.66	-0.4
3,913,284	+		DDA3937_RS17165	0.72	-0.8
3,913,284	+		DDA3937_RS17165	0.72	-0.1
3,913,284	+		DDA3937_RS17165	0.72	-0.1
3,913,284	+		DDA3937_RS17165	0.72	-0.5
3,913,285	-		DDA3937_RS17165	0.72	-0.1
3,913,285	-		DDA3937_RS17165	0.72	-1.3
3,913,365	+		DDA3937_RS17165	0.85	+1.2
3,913,365	+		DDA3937_RS17165	0.85	-0.7
3,913,365	+		DDA3937_RS17165	0.85	+0.8
3,913,369	-		DDA3937_RS17165	0.85	+0.1
3,913,392	+		DDA3937_RS17165	0.89	-0.4
3,913,393	-		DDA3937_RS17165	0.89	+0.5
3,913,475	-				-0.4
3,913,479	+				-0.1
3,913,479	+				+0.5
3,913,480	-				+0.3
3,913,523	+				-0.3
3,913,548	+				+0.2
3,913,594	+				+0.7
3,913,594	+				-0.5
3,913,594	+				+0.5
3,913,594	+				-0.6
3,913,594	+				-0.3
3,913,594	+				-0.0
3,913,594	+				+0.8
3,913,594	+				+1.0
3,913,594	+				-0.1
3,913,594	+				-0.3
3,913,595	-				-0.1
3,913,595	-				-0.2
3,913,595	-				-0.6
3,913,605	+				-0.9
3,913,606	-				-0.8
3,913,649	+				+0.7
3,913,649	+				+0.1
3,913,649	+				-1.1
3,913,650	-				-0.5
3,913,650	-				-0.8
3,913,652	-				-0.5
3,913,706	-				-1.5
3,913,711	+				+0.8
3,914,005	+		DDA3937_RS17170	0.19	-0.1
3,914,043	+		DDA3937_RS17170	0.22	-0.4
3,914,295	+		DDA3937_RS17170	0.41	+1.5
3,914,296	-				-0.1
3,914,296	-		DDA3937_RS17170	0.41	-0.5
3,914,299	+		DDA3937_RS17170	0.41	-1.1
3,914,299	+				+2.1
3,914,300	-		DDA3937_RS17170	0.41	-0.3
3,914,429	-		DDA3937_RS17170	0.51	-1.4
3,914,725	-				-0.5
3,914,894	-		DDA3937_RS17170	0.86	-0.8
3,914,920	+		DDA3937_RS17170	0.88	-0.4
3,914,920	+		DDA3937_RS17170	0.88	-0.5
3,914,921	-				+0.5
3,914,973	+				-0.3
3,914,973	+				+0.5
3,914,973	+				-0.8
3,915,001	+				+0.5
3,915,002	-				+1.2
3,915,002	-				-2.5
3,915,073	+				+0.7
3,915,073	+				+1.2
3,915,073	+				-1.6
3,915,103	+				+0.9
3,915,106	+				+0.4
3,915,107	-				-1.2
3,915,121	+				+0.2
3,915,122	-				+0.9
3,915,199	+		DDA3937_RS17175	0.13	+1.8
3,915,200	-		DDA3937_RS17175	0.14	-1.3
3,915,200	-		DDA3937_RS17175	0.14	+1.3
3,915,240	+		DDA3937_RS17175	0.33	-0.0
3,915,240	+		DDA3937_RS17175	0.33	-0.7
3,915,240	+		DDA3937_RS17175	0.33	-0.5
3,915,240	+		DDA3937_RS17175	0.33	-0.9
3,915,300	+		DDA3937_RS17175	0.62	+0.7
3,915,301	-		DDA3937_RS17175	0.62	+0.5
3,915,301	-		DDA3937_RS17175	0.62	+0.4
3,915,305	+		DDA3937_RS17175	0.64	-0.9
3,915,305	+		DDA3937_RS17175	0.64	+2.1
3,915,305	+		DDA3937_RS17175	0.64	-0.4
3,915,305	+		DDA3937_RS17175	0.64	-0.6
3,915,305	+		DDA3937_RS17175	0.64	-0.8
3,915,305	+		DDA3937_RS17175	0.64	-0.6
3,915,306	-		DDA3937_RS17175	0.65	-0.6
3,915,306	-		DDA3937_RS17175	0.65	-0.6
3,915,306	-		DDA3937_RS17175	0.65	+0.5
3,915,306	-		DDA3937_RS17175	0.65	-0.1
3,915,306	-		DDA3937_RS17175	0.65	-1.8
3,915,332	-		DDA3937_RS17175	0.77	-0.5
3,915,332	-		DDA3937_RS17175	0.77	+0.4
3,915,332	-		DDA3937_RS17175	0.77	-0.5
3,915,332	-		DDA3937_RS17175	0.77	+2.8
3,915,332	-		DDA3937_RS17175	0.77	-0.4
3,915,335	+		DDA3937_RS17175	0.79	+2.8
3,915,335	+		DDA3937_RS17175	0.79	-0.1
3,915,335	+		DDA3937_RS17175	0.79	+2.2
3,915,335	+		DDA3937_RS17175	0.79	-0.6
3,915,336	-		DDA3937_RS17175	0.79	+0.1
3,915,336	-		DDA3937_RS17175	0.79	+1.7
3,915,336	-		DDA3937_RS17175	0.79	-1.3
3,915,336	-		DDA3937_RS17175	0.79	-0.9
3,915,357	+		DDA3937_RS17175	0.89	+0.5
3,915,357	+		DDA3937_RS17175	0.89	-0.7
3,915,357	+		DDA3937_RS17175	0.89	-0.3
3,915,357	+		DDA3937_RS17175	0.89	+0.1
3,915,357	+		DDA3937_RS17175	0.89	+0.3
3,915,357	+		DDA3937_RS17175	0.89	-0.4
3,915,358	-				+0.1
3,915,358	-				+1.8
3,915,359	+				+0.3
3,915,359	+				+0.7
3,915,359	+				-0.4
3,915,359	+				-0.5
3,915,359	+				-0.8
3,915,359	+				+0.6
3,915,359	+				-0.6
3,915,359	+				-0.9
3,915,359	+				+0.2
3,915,359	+				-0.3
3,915,359	+				-0.4
3,915,359	+				-1.0
3,915,359	+				-0.5
3,915,359	+				+0.5
3,915,359	+				-0.2
3,915,359	+				+1.7
3,915,360	-				-0.7
3,915,360	-				-0.1
3,915,360	-				-0.8
3,915,360	-				+0.4
3,915,360	-				-0.5
3,915,360	-				-0.2
3,915,360	-				+0.2
3,915,360	-				-0.6
3,915,360	-				-0.7
3,915,360	-				-1.7
3,915,360	-				+3.6
3,915,360	-				+0.3
3,915,360	-				-0.7
3,915,360	-				-0.3
3,915,531	+				-0.3
3,915,552	+				-0.6
3,915,552	+				+0.3
3,915,552	+				+0.4
3,915,553	-				+0.2
3,915,565	+				-0.4
3,915,596	-				+0.1
3,915,602	+				-0.6
3,915,602	+				+0.7
3,915,603	-				+0.2
3,915,611	-				-0.5
3,915,612	+				-2.0
3,915,625	+				-0.2
3,915,676	-		DDA3937_RS23440	0.15	-1.3
3,915,693	+		DDA3937_RS23440	0.27	-0.5
3,915,693	+		DDA3937_RS23440	0.27	-0.5
3,915,693	+		DDA3937_RS23440	0.27	+0.2
3,915,704	+		DDA3937_RS23440	0.34	-0.2
3,915,704	+		DDA3937_RS23440	0.34	-1.4
3,915,705	-		DDA3937_RS23440	0.35	+1.7
3,915,889	-				-1.1
3,915,889	-				-1.9
3,916,054	+		DDA3937_RS17180	0.29	+0.7
3,916,054	+		DDA3937_RS17180	0.29	+3.2