Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17155

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,905,953	+				+1.5
3,906,527	-				-0.5
3,906,604	+				-0.3
3,906,605	-				-0.5
3,906,611	-				-0.9
3,906,611	-				+1.9
3,906,679	+		DDA3937_RS17150	0.20	-1.4
3,906,680	-		DDA3937_RS17150	0.21	+0.9
3,906,680	-		DDA3937_RS17150	0.21	-0.3
3,906,797	-		DDA3937_RS17150	0.55	+0.5
3,906,845	-		DDA3937_RS17150	0.69	+0.5
3,906,941	+				-0.4
3,906,955	-				+0.8
3,906,955	-				+0.4
3,906,970	-				-1.0
3,906,970	-				-1.9
3,906,970	-				-1.6
3,906,970	-				-1.8
3,907,080	+				-0.3
3,907,081	-				-0.8
3,907,081	-				-1.1
3,907,081	-				-0.1
3,907,151	-				-0.5
3,907,160	+				+1.5
3,907,161	-				-2.2
3,907,169	+				+0.5
3,907,170	-				-0.5
3,907,256	-				-3.3
3,907,256	-				-0.2
3,907,296	+				-0.1
3,907,296	+				-2.1
3,907,296	+				-1.5
3,907,296	+				+0.8
3,907,297	-				-2.6
3,907,348	+		DDA3937_RS17155	0.11	-0.3
3,907,349	-		DDA3937_RS17155	0.11	-1.6
3,907,349	-		DDA3937_RS17155	0.11	-1.6
3,907,349	-		DDA3937_RS17155	0.11	-3.7
3,907,349	-		DDA3937_RS17155	0.11	-3.3
3,907,477	+		DDA3937_RS17155	0.14	-1.1
3,907,500	+		DDA3937_RS17155	0.15	-1.4
3,907,500	+		DDA3937_RS17155	0.15	-1.6
3,907,724	+		DDA3937_RS17155	0.21	+1.9
3,907,724	+		DDA3937_RS17155	0.21	-1.9
3,907,724	+		DDA3937_RS17155	0.21	-1.6
3,907,725	-		DDA3937_RS17155	0.21	-3.3
3,907,725	-		DDA3937_RS17155	0.21	-1.3
3,907,725	-		DDA3937_RS17155	0.21	-0.2
3,907,725	-		DDA3937_RS17155	0.21	+0.3
3,907,725	-		DDA3937_RS17155	0.21	-3.4
3,907,838	+		DDA3937_RS17155	0.24	-0.6
3,907,838	+		DDA3937_RS17155	0.24	-1.6
3,907,839	-		DDA3937_RS17155	0.24	-3.5
3,907,839	-		DDA3937_RS17155	0.24	-2.6
3,907,839	-		DDA3937_RS17155	0.24	-2.4
3,907,839	-		DDA3937_RS17155	0.24	-2.5
3,907,974	-		DDA3937_RS17155	0.27	-1.9
3,907,996	+		DDA3937_RS17155	0.28	-0.5
3,907,997	-		DDA3937_RS17155	0.28	-2.7
3,907,997	-		DDA3937_RS17155	0.28	-1.1
3,907,997	-		DDA3937_RS17155	0.28	-2.0
3,907,997	-		DDA3937_RS17155	0.28	+1.0
3,907,997	-		DDA3937_RS17155	0.28	-1.1
3,908,068	+		DDA3937_RS17155	0.30	-1.3
3,908,201	+		DDA3937_RS17155	0.33	-0.8
3,908,220	-		DDA3937_RS17155	0.34	-2.1
3,908,225	-		DDA3937_RS17155	0.34	-3.1
3,908,253	-		DDA3937_RS17155	0.35	-1.6
3,908,344	+		DDA3937_RS17155	0.37	-2.1
3,908,345	-		DDA3937_RS17155	0.37	-1.8
3,908,453	-		DDA3937_RS17155	0.40	+2.5
3,908,528	-		DDA3937_RS17155	0.42	-0.7
3,908,585	+		DDA3937_RS17155	0.43	-0.1
3,908,585	+		DDA3937_RS17155	0.43	-0.8
3,908,585	+		DDA3937_RS17155	0.43	-2.1
3,908,586	-		DDA3937_RS17155	0.43	-1.1
3,908,586	-		DDA3937_RS17155	0.43	-0.9
3,908,888	+		DDA3937_RS17155	0.52	-1.9
3,908,888	+		DDA3937_RS17155	0.52	-0.8
3,908,889	-		DDA3937_RS17155	0.52	-3.2
3,909,128	+		DDA3937_RS17155	0.58	-0.6
3,909,129	-		DDA3937_RS17155	0.58	-0.9
3,909,140	+				-0.8
3,909,370	+		DDA3937_RS17155	0.64	-0.1
3,909,616	-		DDA3937_RS17155	0.71	-1.6
3,909,616	-		DDA3937_RS17155	0.71	-1.9
3,909,616	-		DDA3937_RS17155	0.71	-1.7
3,909,616	-		DDA3937_RS17155	0.71	-1.9
3,909,656	-		DDA3937_RS17155	0.72	-2.5
3,909,824	-		DDA3937_RS17155	0.76	-0.6
3,909,824	-		DDA3937_RS17155	0.76	-2.0
3,909,882	+		DDA3937_RS17155	0.78	-1.5
3,909,883	-		DDA3937_RS17155	0.78	-1.9
3,909,883	-		DDA3937_RS17155	0.78	-1.5
3,910,014	-		DDA3937_RS17155	0.81	-2.0
3,910,014	-		DDA3937_RS17155	0.81	-1.5
3,910,127	-		DDA3937_RS17155	0.85	-0.5
3,910,273	+		DDA3937_RS17155	0.88	-1.5
3,910,273	+		DDA3937_RS17155	0.88	-1.8
3,910,273	+		DDA3937_RS17155	0.88	-1.9
3,910,273	+		DDA3937_RS17155	0.88	-0.5
3,910,273	+		DDA3937_RS17155	0.88	-1.3
3,910,273	+		DDA3937_RS17155	0.88	-1.5
3,910,274	-		DDA3937_RS17155	0.88	-1.1
3,910,516	-				-0.8
3,910,709	-				+0.5
3,910,730	+				-3.2
3,910,730	+				+0.0
3,910,731	-				-2.6
3,910,731	-				-0.8
3,910,846	-				-2.5
3,910,916	+		DDA3937_RS17160	0.12	-0.6
3,910,916	+		DDA3937_RS17160	0.12	-1.8
3,910,916	+		DDA3937_RS17160	0.12	-0.5
3,910,916	+		DDA3937_RS17160	0.12	-0.2
3,910,916	+		DDA3937_RS17160	0.12	-1.6
3,910,916	+		DDA3937_RS17160	0.12	-0.5
3,910,916	+		DDA3937_RS17160	0.12	-1.2
3,910,917	-		DDA3937_RS17160	0.12	-2.2
3,910,923	-		DDA3937_RS17160	0.13	-0.5
3,910,923	-		DDA3937_RS17160	0.13	-1.3
3,910,997	+		DDA3937_RS17160	0.17	-1.8
3,910,997	+		DDA3937_RS17160	0.17	-0.4
3,910,997	+		DDA3937_RS17160	0.17	-1.3
3,910,997	+		DDA3937_RS17160	0.17	-1.3
3,910,998	-		DDA3937_RS17160	0.17	+0.8
3,910,998	-		DDA3937_RS17160	0.17	-1.6
3,910,998	-		DDA3937_RS17160	0.17	-0.3
3,910,998	-		DDA3937_RS17160	0.17	-1.8
3,910,998	-		DDA3937_RS17160	0.17	-0.8
3,910,998	-		DDA3937_RS17160	0.17	-0.8
3,910,998	-		DDA3937_RS17160	0.17	-3.5
3,911,002	-		DDA3937_RS17160	0.17	-2.2
3,911,002	-		DDA3937_RS17160	0.17	-1.3
3,911,004	-		DDA3937_RS17160	0.17	-2.2
3,911,188	-		DDA3937_RS17160	0.28	-0.1
3,911,188	-		DDA3937_RS17160	0.28	-1.2
3,911,263	-		DDA3937_RS17160	0.32	-3.2
3,911,279	+		DDA3937_RS17160	0.33	+0.5
3,911,456	+		DDA3937_RS17160	0.43	-0.8
3,911,456	+		DDA3937_RS17160	0.43	-0.4
3,911,456	+		DDA3937_RS17160	0.43	+1.8
3,911,457	-		DDA3937_RS17160	0.43	-1.8
3,911,457	-		DDA3937_RS17160	0.43	-1.3
3,911,457	-		DDA3937_RS17160	0.43	-2.6
3,911,457	-		DDA3937_RS17160	0.43	+0.0
3,911,457	-		DDA3937_RS17160	0.43	-1.9
3,911,457	-		DDA3937_RS17160	0.43	-1.6
3,911,457	-		DDA3937_RS17160	0.43	-0.8
3,911,459	+		DDA3937_RS17160	0.43	-2.9
3,911,460	-		DDA3937_RS17160	0.43	-2.3