Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17055

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,882,950	-		DDA3937_RS17050	0.62	-0.4
3,882,982	+		DDA3937_RS17050	0.64	-0.6
3,882,983	-		DDA3937_RS17050	0.64	-0.1
3,883,015	+		DDA3937_RS17050	0.66	-2.8
3,883,015	+		DDA3937_RS17050	0.66	-1.6
3,883,015	+		DDA3937_RS17050	0.66	-1.2
3,883,015	+		DDA3937_RS17050	0.66	-0.2
3,883,015	+		DDA3937_RS17050	0.66	-0.6
3,883,015	+		DDA3937_RS17050	0.66	-1.2
3,883,015	+		DDA3937_RS17050	0.66	-0.0
3,883,015	+		DDA3937_RS17050	0.66	-1.1
3,883,016	-		DDA3937_RS17050	0.66	-0.9
3,883,016	-		DDA3937_RS17050	0.66	-1.6
3,883,016	-		DDA3937_RS17050	0.66	+0.5
3,883,016	-		DDA3937_RS17050	0.66	-0.2
3,883,016	-		DDA3937_RS17050	0.66	+1.0
3,883,016	-		DDA3937_RS17050	0.66	+0.2
3,883,288	+		DDA3937_RS17050	0.86	-0.3
3,883,288	+		DDA3937_RS17050	0.86	+1.1
3,883,289	-		DDA3937_RS17050	0.86	+2.4
3,883,289	-		DDA3937_RS17050	0.86	-1.2
3,883,318	-		DDA3937_RS17050	0.89	+0.2
3,883,370	-				-0.5
3,883,412	-				+0.3
3,883,463	+				-0.3
3,883,473	-				-0.5
3,883,473	-				-1.1
3,883,489	+				-1.5
3,883,489	+				+0.8
3,883,489	+				+0.5
3,883,489	+				-0.3
3,883,489	+				-0.5
3,883,490	-				-0.8
3,883,506	+				-0.1
3,883,506	+				-2.5
3,883,506	+				-2.1
3,883,506	+				-0.8
3,883,588	-				-0.1
3,883,812	+		DDA3937_RS17055	0.24	-0.5
3,883,812	+		DDA3937_RS17055	0.24	-0.3
3,883,812	+		DDA3937_RS17055	0.24	-1.1
3,883,812	+		DDA3937_RS17055	0.24	-1.5
3,883,812	+		DDA3937_RS17055	0.24	+0.1
3,883,812	+		DDA3937_RS17055	0.24	-0.8
3,883,812	+		DDA3937_RS17055	0.24	-0.4
3,883,812	+		DDA3937_RS17055	0.24	-1.1
3,883,813	-		DDA3937_RS17055	0.24	+0.1
3,883,813	-		DDA3937_RS17055	0.24	-0.4
3,883,813	-		DDA3937_RS17055	0.24	-1.8
3,883,813	-		DDA3937_RS17055	0.24	+2.5
3,883,813	-		DDA3937_RS17055	0.24	-0.1
3,883,813	-		DDA3937_RS17055	0.24	-2.1
3,883,813	-		DDA3937_RS17055	0.24	-1.2
3,883,816	+		DDA3937_RS17055	0.24	+1.5
3,883,816	+		DDA3937_RS17055	0.24	-0.0
3,883,816	+		DDA3937_RS17055	0.24	+1.6
3,883,846	+		DDA3937_RS17055	0.26	-0.3
3,883,867	+		DDA3937_RS17055	0.28	-0.3
3,884,013	+		DDA3937_RS17055	0.38	+0.7
3,884,014	-		DDA3937_RS17055	0.39	+1.0
3,884,014	-		DDA3937_RS17055	0.39	+0.5
3,884,014	-		DDA3937_RS17055	0.39	-0.4
3,884,014	-		DDA3937_RS17055	0.39	-0.2
3,884,014	-				+0.5
3,884,032	+		DDA3937_RS17055	0.40	+0.9
3,884,040	+		DDA3937_RS17055	0.40	-1.8
3,884,040	+		DDA3937_RS17055	0.40	+0.6
3,884,040	+		DDA3937_RS17055	0.40	-0.3
3,884,041	-				+0.5
3,884,061	+		DDA3937_RS17055	0.42	-0.1
3,884,062	-		DDA3937_RS17055	0.42	+0.7
3,884,074	-		DDA3937_RS17055	0.43	-0.5
3,884,102	+		DDA3937_RS17055	0.45	-1.2
3,884,102	+		DDA3937_RS17055	0.45	-1.7
3,884,103	-		DDA3937_RS17055	0.45	-0.4
3,884,196	+		DDA3937_RS17055	0.52	-2.1
3,884,196	+		DDA3937_RS17055	0.52	+5.5
3,884,196	+		DDA3937_RS17055	0.52	+0.0
3,884,196	+		DDA3937_RS17055	0.52	-0.8
3,884,196	+		DDA3937_RS17055	0.52	-0.4
3,884,197	-		DDA3937_RS17055	0.52	+2.4
3,884,197	-		DDA3937_RS17055	0.52	+0.7
3,884,197	-		DDA3937_RS17055	0.52	+0.5
3,884,300	+		DDA3937_RS17055	0.60	+0.5
3,884,300	+		DDA3937_RS17055	0.60	+0.9
3,884,300	+		DDA3937_RS17055	0.60	+2.0
3,884,301	-				-0.8
3,884,301	-		DDA3937_RS17055	0.60	-0.2
3,884,301	-		DDA3937_RS17055	0.60	+0.3
3,884,301	-		DDA3937_RS17055	0.60	+0.5
3,884,354	+		DDA3937_RS17055	0.64	+0.2
3,884,354	+		DDA3937_RS17055	0.64	+0.4
3,884,381	-		DDA3937_RS17055	0.66	-1.1
3,884,381	-		DDA3937_RS17055	0.66	+0.9
3,884,381	-		DDA3937_RS17055	0.66	-0.1
3,884,381	-		DDA3937_RS17055	0.66	-0.6
3,884,387	-		DDA3937_RS17055	0.66	-0.1
3,884,430	-		DDA3937_RS17055	0.69	-0.2
3,884,430	-		DDA3937_RS17055	0.69	+3.2
3,884,430	-		DDA3937_RS17055	0.69	+0.0
3,884,443	+		DDA3937_RS17055	0.70	+0.4
3,884,443	+		DDA3937_RS17055	0.70	-1.3
3,884,479	+		DDA3937_RS17055	0.73	+0.3
3,884,491	+		DDA3937_RS17055	0.74	+1.0
3,884,491	+		DDA3937_RS17055	0.74	-1.2
3,884,491	+		DDA3937_RS17055	0.74	-0.2
3,884,492	-		DDA3937_RS17055	0.74	-0.6
3,884,492	-				-0.1
3,884,551	+		DDA3937_RS17055	0.78	-0.6
3,884,573	-		DDA3937_RS17055	0.80	+0.5
3,884,643	+		DDA3937_RS17055	0.85	-0.2
3,884,643	+		DDA3937_RS17055	0.85	-0.4
3,884,643	+		DDA3937_RS17055	0.85	-0.8
3,884,643	+		DDA3937_RS17055	0.85	-0.4
3,884,644	-		DDA3937_RS17055	0.85	+1.1
3,884,644	-		DDA3937_RS17055	0.85	+1.3
3,884,644	-				-0.1
3,884,668	+		DDA3937_RS17055	0.87	-0.1
3,884,668	+		DDA3937_RS17055	0.87	+1.1
3,884,668	+		DDA3937_RS17055	0.87	-0.8
3,884,669	-		DDA3937_RS17055	0.87	+1.4
3,884,669	-		DDA3937_RS17055	0.87	+0.7
3,884,670	+		DDA3937_RS17055	0.87	-0.4
3,884,670	+		DDA3937_RS17055	0.87	+0.1
3,884,670	+		DDA3937_RS17055	0.87	-0.6
3,884,670	+		DDA3937_RS17055	0.87	-0.2
3,884,670	+		DDA3937_RS17055	0.87	-0.9
3,884,671	-		DDA3937_RS17055	0.87	-0.2
3,884,671	-		DDA3937_RS17055	0.87	-1.1
3,884,671	-		DDA3937_RS17055	0.87	-0.5
3,884,671	-		DDA3937_RS17055	0.87	-1.3
3,884,748	+				-0.1
3,884,748	+				-1.1
3,884,749	-				-0.8
3,884,768	-				-1.2
3,884,768	-				-0.1
3,884,768	-				-0.7
3,884,813	+				-1.6
3,884,813	+				+0.0
3,884,813	+				-0.1
3,884,813	+				+0.7
3,884,814	-				-2.5
3,884,814	-				-0.4
3,884,816	+				-0.1
3,884,816	+				-1.3
3,884,817	-				+0.9
3,884,817	-				-0.1
3,884,817	-				+0.5
3,884,839	+				+0.2
3,884,857	-				-0.5
3,884,904	+				-1.0
3,884,904	+				-2.3
3,884,904	+				-0.8
3,884,904	+				+0.4
3,884,904	+				+0.8
3,884,904	+				-1.8
3,884,905	-				+0.3
3,884,905	-				-1.6
3,884,905	-				+0.3
3,884,905	-				-0.8
3,884,905	-				-1.4
3,884,905	-				+6.7
3,884,905	-				+0.2
3,884,905	-				-0.9
3,884,905	-				-1.1
3,884,905	-				-0.9
3,884,905	-				+1.9
3,884,906	+				-0.1
3,884,906	+				+0.5
3,884,906	+				-2.2
3,884,907	-				-0.9
3,884,907	-				-0.9
3,884,919	+				-0.3
3,884,919	+				+3.4
3,884,919	+				+2.1
3,884,919	+				+0.8
3,884,919	+				-0.4
3,884,920	-				-1.1
3,884,920	-				-1.1
3,884,920	-				-0.6
3,884,920	-				-1.3
3,884,920	-				-0.1
3,884,954	+				+0.5
3,884,954	+				+0.2
3,884,957	+				-0.8
3,884,957	+				-0.6
3,884,957	+				+1.1
3,884,958	-				+0.2
3,884,958	-				-0.3
3,885,034	+				-0.6
3,885,034	+				-0.6
3,885,035	-				+0.2
3,885,035	-				-0.7
3,885,035	-				-0.4
3,885,035	-				-0.3
3,885,035	-				+1.0
3,885,035	-				-1.9
3,885,036	+				+0.7
3,885,036	+				-1.1
3,885,081	-				+2.1
3,885,237	-				-0.1
3,885,293	+				+0.4
3,885,319	+				-2.1
3,885,319	+				-0.8
3,885,319	+				+0.8
3,885,319	+				-0.4
3,885,320	-				-0.6
3,885,320	-				-2.1
3,885,320	-				-0.2
3,885,320	-				+0.7
3,885,320	-				-1.9
3,885,320	-				+0.9
3,885,320	-				-0.5
3,885,320	-				+0.9
3,885,320	-				-0.4
3,885,320	-				-0.7
3,885,320	-				+1.8
3,885,322	-				+1.3
3,885,322	-				-0.3
3,885,322	-				-0.8
3,885,343	+				-0.1
3,885,343	+				+0.9
3,885,344	-				-0.6
3,885,346	+				-0.9
3,885,346	+				-3.1
3,885,353	-				-0.1
3,885,377	-				+0.3
3,885,378	+				+1.1
3,885,379	-				+0.4
3,885,379	-				-1.5
3,885,395	-				+0.0
3,885,395	-				+1.5
3,885,395	-				-0.3
3,885,395	-				+1.1
3,885,395	-				-0.5
3,885,395	-				-1.6
3,885,397	-				+0.5
3,885,397	-				-0.2
3,885,399	-				+0.4
3,885,399	-				-2.1
3,885,603	-				-2.2
3,885,695	+				+1.6
3,885,725	+				+0.3
3,885,734	+				+0.5
3,885,734	+				+0.7
3,885,734	+				+0.1
3,885,734	+				-1.1
3,885,734	+				+1.3
3,885,734	+				-2.2
3,885,735	-				+0.2
3,885,735	-				+4.0
3,885,735	-				+1.7
3,885,735	-				+1.1
3,885,735	-				-0.3
3,885,735	-				-0.4
3,885,736	+				+0.4
3,885,736	+				-0.2
3,885,736	+				-0.2
3,885,736	+				-0.4
3,885,736	+				-0.8
3,885,736	+				-0.8
3,885,737	-				-1.4
3,885,741	+				+0.2
3,885,741	+				-0.8
3,885,741	+				+0.1
3,885,741	+				+1.3
3,885,741	+				+0.8
3,885,741	+				-0.7
3,885,741	+				-0.5
3,885,741	+				-0.5
3,885,741	+				-1.3
3,885,741	+				+0.5
3,885,741	+				+0.8
3,885,741	+				+0.2
3,885,741	+				-0.1
3,885,742	-				-0.6
3,885,742	-				-1.5
3,885,742	-				-1.1
3,885,742	-				-1.0
3,885,742	-				-1.6
3,885,742	-				+0.7
3,885,742	-				-0.4
3,885,742	-				-0.1
3,885,742	-				+0.2
3,885,742	-				+2.2
3,885,742	-				+0.1
3,885,742	-				-1.4
3,885,742	-				+1.1
3,885,742	-				-0.8
3,885,750	+				-0.3
3,885,765	+				+0.1
3,885,766	-				-0.6
3,885,770	+				-0.7
3,885,770	+				-2.4
3,885,770	+				+0.6
3,885,770	+				-0.7
3,885,770	+				+0.7
3,885,770	+				-0.6
3,885,770	+				-0.1
3,885,770	+				+0.3
3,885,771	-				+0.5
3,885,771	-				-0.8
3,885,771	-				-1.2
3,885,771	-				+0.1
3,885,771	-				-0.2
3,885,771	-				-0.1
3,885,803	-				+0.1
3,885,803	-				-1.3
3,885,804	+				-1.5
3,885,804	+				-0.9
3,885,805	-				+0.8
3,885,805	-				-2.9