Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17015

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,870,217	+		DDA3937_RS17010	0.25	-0.2
3,870,218	-		DDA3937_RS17010	0.26	+0.5
3,870,218	-		DDA3937_RS17010	0.26	-0.2
3,870,218	-		DDA3937_RS17010	0.26	-0.2
3,870,218	-		DDA3937_RS17010	0.26	-0.2
3,870,466	+		DDA3937_RS17010	0.57	-0.5
3,870,511	+		DDA3937_RS17010	0.62	-0.1
3,870,685	-		DDA3937_RS17010	0.84	+1.6
3,870,685	-		DDA3937_RS17010	0.84	-1.2
3,870,702	+		DDA3937_RS17010	0.86	-0.3
3,870,702	+		DDA3937_RS17010	0.86	-1.3
3,870,785	+				+4.1
3,870,786	-				-0.8
3,870,786	-				-0.1
3,870,811	+				-0.2
3,870,812	-				+0.5
3,870,812	-				+0.5
3,870,832	+				-0.1
3,870,832	+				-0.5
3,870,833	-				+0.5
3,870,833	-				-0.4
3,870,833	-				-1.1
3,870,833	-				-0.5
3,870,903	+				-0.5
3,870,903	+				-1.5
3,870,903	+				+0.1
3,870,904	-				+0.4
3,870,904	-				+0.3
3,870,904	-				+1.6
3,870,913	-				-1.6
3,870,913	-				-0.5
3,870,913	-				-1.4
3,870,913	-				-0.8
3,870,913	-				+0.5
3,870,954	+				-0.8
3,870,955	-				-0.9
3,870,955	-				-0.8
3,870,955	-				-0.2
3,870,979	+				-2.9
3,870,979	+				+0.6
3,870,980	-				-0.6
3,870,980	-				-1.1
3,871,015	-				-0.9
3,871,017	+				-0.1
3,871,018	-				-1.8
3,871,026	-				-0.2
3,871,026	-				-1.2
3,871,112	+				-0.4
3,871,113	-				-0.4
3,871,113	-				-1.1
3,871,113	-				+0.4
3,871,113	-				+0.7
3,871,113	-				-0.3
3,871,280	+		DDA3937_RS17015	0.11	+0.3
3,871,365	+		DDA3937_RS17015	0.15	-2.4
3,871,372	-		DDA3937_RS17015	0.15	-1.3
3,871,389	+		DDA3937_RS17015	0.16	-1.1
3,871,399	-		DDA3937_RS17015	0.17	-1.5
3,871,401	+		DDA3937_RS17015	0.17	-0.7
3,871,401	+		DDA3937_RS17015	0.17	-1.0
3,871,402	-		DDA3937_RS17015	0.17	-1.2
3,871,402	-		DDA3937_RS17015	0.17	-1.2
3,871,402	-		DDA3937_RS17015	0.17	-1.7
3,871,402	-		DDA3937_RS17015	0.17	+1.2
3,871,608	+		DDA3937_RS17015	0.26	-0.9
3,871,608	+		DDA3937_RS17015	0.26	-1.4
3,871,608	+		DDA3937_RS17015	0.26	+0.3
3,871,609	-		DDA3937_RS17015	0.26	-1.1
3,871,667	+		DDA3937_RS17015	0.29	-1.6
3,871,667	+		DDA3937_RS17015	0.29	-0.9
3,871,668	-		DDA3937_RS17015	0.29	-1.5
3,871,668	-		DDA3937_RS17015	0.29	-0.8
3,871,668	-		DDA3937_RS17015	0.29	-1.6
3,871,668	-		DDA3937_RS17015	0.29	-1.2
3,871,744	-		DDA3937_RS17015	0.32	-0.9
3,871,755	+		DDA3937_RS17015	0.33	-1.2
3,871,756	-		DDA3937_RS17015	0.33	-0.5
3,871,821	+		DDA3937_RS17015	0.35	-1.1
3,871,821	+		DDA3937_RS17015	0.35	+1.2
3,871,821	+		DDA3937_RS17015	0.35	-1.7
3,871,822	-		DDA3937_RS17015	0.36	-0.7
3,871,822	-		DDA3937_RS17015	0.36	+1.0
3,871,822	-		DDA3937_RS17015	0.36	-1.3
3,871,822	-		DDA3937_RS17015	0.36	+1.8
3,871,823	+		DDA3937_RS17015	0.36	-2.7
3,871,823	+		DDA3937_RS17015	0.36	-2.0
3,871,824	-		DDA3937_RS17015	0.36	-1.4
3,871,824	-		DDA3937_RS17015	0.36	-1.3
3,871,824	-		DDA3937_RS17015	0.36	-0.8
3,871,824	-		DDA3937_RS17015	0.36	-1.1
3,871,824	-		DDA3937_RS17015	0.36	+0.1
3,871,885	+		DDA3937_RS17015	0.38	-1.5
3,871,885	+		DDA3937_RS17015	0.38	-0.4
3,871,886	-		DDA3937_RS17015	0.38	-1.5
3,871,886	-		DDA3937_RS17015	0.38	-2.4
3,871,886	-		DDA3937_RS17015	0.38	+2.1
3,871,910	+		DDA3937_RS17015	0.39	-0.3
3,871,927	-		DDA3937_RS17015	0.40	+0.7
3,871,927	-		DDA3937_RS17015	0.40	-0.6
3,871,982	+		DDA3937_RS17015	0.43	-1.1
3,871,983	-		DDA3937_RS17015	0.43	-2.3
3,872,148	+		DDA3937_RS17015	0.50	-1.1
3,872,195	+		DDA3937_RS17015	0.52	-2.1
3,872,195	+		DDA3937_RS17015	0.52	-0.1
3,872,195	+		DDA3937_RS17015	0.52	-1.4
3,872,195	+		DDA3937_RS17015	0.52	-0.4
3,872,195	+		DDA3937_RS17015	0.52	-1.5
3,872,195	+		DDA3937_RS17015	0.52	-1.2
3,872,195	+		DDA3937_RS17015	0.52	-1.5
3,872,195	+		DDA3937_RS17015	0.52	-1.5
3,872,196	-		DDA3937_RS17015	0.52	+0.9
3,872,336	+		DDA3937_RS17015	0.58	-2.5
3,872,336	+		DDA3937_RS17015	0.58	-2.3
3,872,336	+		DDA3937_RS17015	0.58	-1.6
3,872,336	+		DDA3937_RS17015	0.58	-1.4
3,872,336	+		DDA3937_RS17015	0.58	+0.1
3,872,336	+		DDA3937_RS17015	0.58	-0.9
3,872,337	-		DDA3937_RS17015	0.59	-1.3
3,872,337	-		DDA3937_RS17015	0.59	-1.7
3,872,337	-		DDA3937_RS17015	0.59	-1.5
3,872,367	-		DDA3937_RS17015	0.60	-1.8
3,872,373	+		DDA3937_RS17015	0.60	-1.2
3,872,373	+		DDA3937_RS17015	0.60	-1.2
3,872,374	-		DDA3937_RS17015	0.60	-1.0
3,872,374	-		DDA3937_RS17015	0.60	-2.2
3,872,374	-		DDA3937_RS17015	0.60	-1.9
3,872,374	-		DDA3937_RS17015	0.60	-1.0
3,872,396	+		DDA3937_RS17015	0.61	-0.8
3,872,396	+		DDA3937_RS17015	0.61	-0.8
3,872,396	+		DDA3937_RS17015	0.61	-0.1
3,872,396	+		DDA3937_RS17015	0.61	-1.7
3,872,397	-		DDA3937_RS17015	0.61	-2.3
3,872,424	+		DDA3937_RS17015	0.62	-0.1
3,872,424	+		DDA3937_RS17015	0.62	-1.1
3,872,424	+		DDA3937_RS17015	0.62	-1.9
3,872,495	+		DDA3937_RS17015	0.66	-1.8
3,872,495	+		DDA3937_RS17015	0.66	+0.7
3,872,495	+		DDA3937_RS17015	0.66	-1.4
3,872,496	-		DDA3937_RS17015	0.66	-1.9
3,872,496	-		DDA3937_RS17015	0.66	-1.6
3,872,496	-		DDA3937_RS17015	0.66	-2.3
3,872,496	-		DDA3937_RS17015	0.66	-0.2
3,872,496	-		DDA3937_RS17015	0.66	-1.2
3,872,496	-		DDA3937_RS17015	0.66	-1.3
3,872,496	-		DDA3937_RS17015	0.66	-0.5
3,872,496	-		DDA3937_RS17015	0.66	-2.5
3,872,496	-		DDA3937_RS17015	0.66	-3.6
3,872,496	-		DDA3937_RS17015	0.66	-1.1
3,872,496	-		DDA3937_RS17015	0.66	-1.4
3,872,496	-		DDA3937_RS17015	0.66	-1.4
3,872,496	-		DDA3937_RS17015	0.66	-1.7
3,872,496	-		DDA3937_RS17015	0.66	-1.9
3,872,496	-		DDA3937_RS17015	0.66	-0.8
3,872,496	-		DDA3937_RS17015	0.66	-1.5
3,872,516	+		DDA3937_RS17015	0.67	-0.9
3,872,516	+		DDA3937_RS17015	0.67	+0.5
3,872,517	-		DDA3937_RS17015	0.67	-1.4
3,872,517	-		DDA3937_RS17015	0.67	-1.6
3,872,517	-		DDA3937_RS17015	0.67	-1.1
3,872,517	-		DDA3937_RS17015	0.67	-1.2
3,872,547	+		DDA3937_RS17015	0.68	-0.7
3,872,548	-		DDA3937_RS17015	0.68	-0.8
3,872,582	+		DDA3937_RS17015	0.69	-1.6
3,872,582	+		DDA3937_RS17015	0.69	-1.6
3,872,582	+		DDA3937_RS17015	0.69	-1.5
3,872,582	+		DDA3937_RS17015	0.69	-1.3
3,872,583	-		DDA3937_RS17015	0.70	-1.5
3,872,583	-		DDA3937_RS17015	0.70	-3.6
3,872,583	-		DDA3937_RS17015	0.70	-1.8
3,872,583	-		DDA3937_RS17015	0.70	-3.5
3,872,598	+		DDA3937_RS17015	0.70	-1.3
3,872,598	+		DDA3937_RS17015	0.70	-1.5
3,872,599	-		DDA3937_RS17015	0.70	-0.8
3,872,633	+		DDA3937_RS17015	0.72	-1.2
3,872,634	-		DDA3937_RS17015	0.72	+0.2
3,872,634	-		DDA3937_RS17015	0.72	-0.9
3,872,634	-		DDA3937_RS17015	0.72	-1.0
3,872,634	-		DDA3937_RS17015	0.72	+0.5
3,872,634	-		DDA3937_RS17015	0.72	-1.4
3,872,634	-		DDA3937_RS17015	0.72	-1.9
3,872,634	-		DDA3937_RS17015	0.72	+0.9
3,872,652	-		DDA3937_RS17015	0.73	-2.0
3,872,720	+		DDA3937_RS17015	0.76	-0.9
3,872,720	+		DDA3937_RS17015	0.76	-0.7
3,872,720	+		DDA3937_RS17015	0.76	-1.5
3,872,720	+		DDA3937_RS17015	0.76	+0.8
3,872,720	+		DDA3937_RS17015	0.76	-2.3
3,872,720	+		DDA3937_RS17015	0.76	+0.0
3,872,720	+		DDA3937_RS17015	0.76	-2.2
3,872,720	+		DDA3937_RS17015	0.76	-2.7
3,872,720	+		DDA3937_RS17015	0.76	-1.8
3,872,720	+		DDA3937_RS17015	0.76	-2.5
3,872,720	+		DDA3937_RS17015	0.76	-1.8
3,872,721	-		DDA3937_RS17015	0.76	-1.7
3,872,721	-		DDA3937_RS17015	0.76	-2.1
3,872,721	-		DDA3937_RS17015	0.76	-1.1
3,872,721	-		DDA3937_RS17015	0.76	-1.4
3,872,721	-		DDA3937_RS17015	0.76	-0.8
3,872,721	-		DDA3937_RS17015	0.76	-1.7
3,872,721	-		DDA3937_RS17015	0.76	-2.1
3,872,721	-		DDA3937_RS17015	0.76	-1.1
3,872,721	-		DDA3937_RS17015	0.76	-1.2
3,872,721	-		DDA3937_RS17015	0.76	-1.8
3,872,721	-		DDA3937_RS17015	0.76	-0.5
3,872,721	-		DDA3937_RS17015	0.76	-2.3
3,872,724	+		DDA3937_RS17015	0.76	-2.4
3,872,724	+		DDA3937_RS17015	0.76	-3.3
3,872,724	+		DDA3937_RS17015	0.76	-0.3
3,872,724	+		DDA3937_RS17015	0.76	-0.8
3,872,724	+		DDA3937_RS17015	0.76	-1.6
3,872,724	+		DDA3937_RS17015	0.76	-1.8
3,872,725	-		DDA3937_RS17015	0.76	-1.4
3,872,725	-		DDA3937_RS17015	0.76	-0.8
3,872,725	-		DDA3937_RS17015	0.76	-3.3
3,872,725	-		DDA3937_RS17015	0.76	-0.1
3,872,725	-		DDA3937_RS17015	0.76	-2.1
3,872,725	-		DDA3937_RS17015	0.76	-1.5
3,872,725	-		DDA3937_RS17015	0.76	-0.5
3,872,725	-		DDA3937_RS17015	0.76	-0.7
3,872,725	-		DDA3937_RS17015	0.76	-1.6
3,872,725	-		DDA3937_RS17015	0.76	-0.2
3,872,725	-		DDA3937_RS17015	0.76	-1.5
3,872,730	+		DDA3937_RS17015	0.76	-1.1
3,872,730	+		DDA3937_RS17015	0.76	-1.5
3,872,730	+		DDA3937_RS17015	0.76	-1.1
3,872,731	-		DDA3937_RS17015	0.76	-1.5
3,872,731	-		DDA3937_RS17015	0.76	-2.0
3,872,731	-		DDA3937_RS17015	0.76	-1.2
3,872,797	-		DDA3937_RS17015	0.79	-1.1
3,872,853	+		DDA3937_RS17015	0.82	-1.2
3,872,853	+		DDA3937_RS17015	0.82	+0.7
3,872,862	+		DDA3937_RS17015	0.82	-1.3
3,872,862	+		DDA3937_RS17015	0.82	-3.2
3,872,862	+		DDA3937_RS17015	0.82	-1.0
3,872,862	+		DDA3937_RS17015	0.82	-3.1
3,872,863	-		DDA3937_RS17015	0.82	-1.9
3,872,863	-		DDA3937_RS17015	0.82	-2.5
3,872,863	-		DDA3937_RS17015	0.82	-0.8
3,872,865	+		DDA3937_RS17015	0.82	+0.2
3,872,866	-		DDA3937_RS17015	0.82	-2.5
3,872,908	-		DDA3937_RS17015	0.84	-0.9
3,872,908	-		DDA3937_RS17015	0.84	-1.7
3,872,908	-		DDA3937_RS17015	0.84	-0.8
3,872,928	+		DDA3937_RS17015	0.85	-2.2
3,872,985	+		DDA3937_RS17015	0.87	-1.9
3,872,985	+		DDA3937_RS17015	0.87	-0.0
3,872,986	-		DDA3937_RS17015	0.88	-2.0
3,872,986	-		DDA3937_RS17015	0.88	-2.7
3,872,986	-		DDA3937_RS17015	0.88	+5.0
3,873,051	-				-2.3
3,873,144	-				-2.3
3,873,144	-				-1.1
3,873,181	-				-0.2
3,873,234	+				-0.5
3,873,253	+				-0.1
3,873,254	-				-1.9
3,873,254	-				-0.5
3,873,264	+				-2.3
3,873,264	+				-1.5
3,873,265	-				-1.0
3,873,265	-				-1.0
3,873,265	-				-1.1
3,873,275	+				-0.5
3,873,276	-				+1.1
3,873,280	+				-0.1
3,873,345	+				-0.5
3,873,345	+				+0.5
3,873,345	+				+0.0
3,873,346	-				+2.3
3,873,430	+		DDA3937_RS17020	0.12	-0.1
3,873,430	+		DDA3937_RS17020	0.12	-1.1
3,873,430	+		DDA3937_RS17020	0.12	+0.4
3,873,430	+		DDA3937_RS17020	0.12	-0.1
3,873,430	+		DDA3937_RS17020	0.12	-1.1
3,873,430	+		DDA3937_RS17020	0.12	-0.0
3,873,431	-		DDA3937_RS17020	0.12	-0.5
3,873,431	-		DDA3937_RS17020	0.12	+1.5
3,873,431	-		DDA3937_RS17020	0.12	-0.3
3,873,431	-				+0.5
3,873,431	-		DDA3937_RS17020	0.12	+0.4
3,873,432	+		DDA3937_RS17020	0.12	-0.1
3,873,432	+		DDA3937_RS17020	0.12	+0.8
3,873,432	+		DDA3937_RS17020	0.12	-0.5
3,873,432	+		DDA3937_RS17020	0.12	-0.4
3,873,432	+		DDA3937_RS17020	0.12	-1.6
3,873,432	+		DDA3937_RS17020	0.12	+0.1
3,873,432	+		DDA3937_RS17020	0.12	+4.8
3,873,432	+		DDA3937_RS17020	0.12	-0.9
3,873,432	+		DDA3937_RS17020	0.12	-1.1
3,873,432	+		DDA3937_RS17020	0.12	-1.0
3,873,432	+		DDA3937_RS17020	0.12	-0.1
3,873,432	+		DDA3937_RS17020	0.12	-0.9
3,873,432	+		DDA3937_RS17020	0.12	-0.8
3,873,432	+		DDA3937_RS17020	0.12	+1.2
3,873,432	+		DDA3937_RS17020	0.12	-0.1
3,873,432	+		DDA3937_RS17020	0.12	+0.8
3,873,432	+		DDA3937_RS17020	0.12	+0.6
3,873,432	+		DDA3937_RS17020	0.12	-0.9
3,873,432	+		DDA3937_RS17020	0.12	-1.4
3,873,432	+		DDA3937_RS17020	0.12	-0.6
3,873,432	+		DDA3937_RS17020	0.12	-0.6
3,873,432	+		DDA3937_RS17020	0.12	+0.4
3,873,432	+		DDA3937_RS17020	0.12	-0.4
3,873,432	+		DDA3937_RS17020	0.12	+3.6
3,873,433	-		DDA3937_RS17020	0.12	-2.1
3,873,433	-				-0.1
3,873,433	-		DDA3937_RS17020	0.12	+0.9
3,873,433	-		DDA3937_RS17020	0.12	-0.8
3,873,433	-		DDA3937_RS17020	0.12	-0.6
3,873,433	-		DDA3937_RS17020	0.12	-0.1
3,873,433	-		DDA3937_RS17020	0.12	-0.5
3,873,434	+		DDA3937_RS17020	0.12	-1.5
3,873,434	+		DDA3937_RS17020	0.12	-0.4
3,873,434	+		DDA3937_RS17020	0.12	-1.2
3,873,434	+		DDA3937_RS17020	0.12	-0.4
3,873,434	+		DDA3937_RS17020	0.12	-0.1
3,873,434	+		DDA3937_RS17020	0.12	+0.3
3,873,434	+		DDA3937_RS17020	0.12	+0.1
3,873,434	+		DDA3937_RS17020	0.12	+1.2
3,873,434	+		DDA3937_RS17020	0.12	-0.1
3,873,434	+		DDA3937_RS17020	0.12	+0.5
3,873,434	+		DDA3937_RS17020	0.12	-1.1
3,873,434	+		DDA3937_RS17020	0.12	+0.0
3,873,434	+		DDA3937_RS17020	0.12	-0.2
3,873,434	+		DDA3937_RS17020	0.12	+0.4
3,873,434	+		DDA3937_RS17020	0.12	-0.6
3,873,434	+		DDA3937_RS17020	0.12	-0.6
3,873,434	+		DDA3937_RS17020	0.12	-0.8
3,873,434	+		DDA3937_RS17020	0.12	-0.6
3,873,434	+		DDA3937_RS17020	0.12	+0.0
3,873,434	+		DDA3937_RS17020	0.12	+0.7
3,873,435	-				-0.5
3,873,435	-		DDA3937_RS17020	0.12	+0.0
3,873,435	-		DDA3937_RS17020	0.12	-0.9
3,873,511	+		DDA3937_RS17020	0.18	-1.1
3,873,511	+		DDA3937_RS17020	0.18	-0.9
3,873,511	+		DDA3937_RS17020	0.18	-0.8
3,873,511	+		DDA3937_RS17020	0.18	-0.9
3,873,511	+		DDA3937_RS17020	0.18	-0.8
3,873,511	+		DDA3937_RS17020	0.18	-0.3
3,873,511	+		DDA3937_RS17020	0.18	-0.1
3,873,511	+		DDA3937_RS17020	0.18	-0.6
3,873,511	+		DDA3937_RS17020	0.18	+0.0
3,873,511	+		DDA3937_RS17020	0.18	-2.3
3,873,575	+		DDA3937_RS17020	0.23	+0.5
3,873,601	-		DDA3937_RS17020	0.24	-1.8
3,873,771	+		DDA3937_RS17020	0.37	+0.3
3,873,771	+		DDA3937_RS17020	0.37	-0.4
3,873,771	+		DDA3937_RS17020	0.37	+0.6
3,873,771	+		DDA3937_RS17020	0.37	+0.3
3,873,771	+		DDA3937_RS17020	0.37	-2.6
3,873,801	+		DDA3937_RS17020	0.39	-0.6
3,873,845	+		DDA3937_RS17020	0.43	-0.2
3,874,181	+		DDA3937_RS17020	0.68	-0.1
3,874,184	+		DDA3937_RS17020	0.68	-0.9
3,874,184	+		DDA3937_RS17020	0.68	+0.7
3,874,184	+		DDA3937_RS17020	0.68	-0.2
3,874,186	+		DDA3937_RS17020	0.68	+0.2
3,874,186	+		DDA3937_RS17020	0.68	-1.1
3,874,186	+		DDA3937_RS17020	0.68	-1.3
3,874,186	+		DDA3937_RS17020	0.68	+0.5
3,874,217	+		DDA3937_RS17020	0.71	-0.4
3,874,217	+		DDA3937_RS17020	0.71	-0.5