Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16995

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,863,257	+				-0.8
3,863,258	-				+0.1
3,863,258	-				-0.8
3,863,258	-				-1.4
3,863,288	+				+0.2
3,863,288	+				-1.1
3,863,288	+				-0.4
3,863,289	-				+0.5
3,863,289	-				+0.9
3,863,289	-				+0.3
3,863,289	-				-0.8
3,863,289	-				+0.0
3,863,289	-				-0.6
3,863,289	-				+0.7
3,863,308	+		DDA3937_RS16990	0.11	+0.2
3,863,392	+		DDA3937_RS16990	0.19	-1.6
3,863,392	+		DDA3937_RS16990	0.19	+1.5
3,863,392	+		DDA3937_RS16990	0.19	+0.7
3,863,392	+		DDA3937_RS16990	0.19	-1.8
3,863,393	-		DDA3937_RS16990	0.19	+0.9
3,863,418	+		DDA3937_RS16990	0.21	+0.2
3,863,476	+		DDA3937_RS16990	0.27	+1.1
3,863,529	-		DDA3937_RS16990	0.32	-0.9
3,863,621	+		DDA3937_RS16990	0.41	-0.4
3,863,621	+		DDA3937_RS16990	0.41	-0.7
3,863,621	+		DDA3937_RS16990	0.41	-0.0
3,863,621	+		DDA3937_RS16990	0.41	+0.2
3,863,621	+		DDA3937_RS16990	0.41	+0.9
3,863,622	-				+2.7
3,863,622	-		DDA3937_RS16990	0.41	-1.9
3,863,622	-		DDA3937_RS16990	0.41	+0.0
3,863,622	-		DDA3937_RS16990	0.41	-0.1
3,863,624	+		DDA3937_RS16990	0.41	-0.1
3,863,624	+		DDA3937_RS16990	0.41	+1.5
3,863,624	+		DDA3937_RS16990	0.41	+0.6
3,863,624	+		DDA3937_RS16990	0.41	-1.1
3,863,625	-		DDA3937_RS16990	0.41	-1.3
3,863,625	-		DDA3937_RS16990	0.41	+0.7
3,863,647	+		DDA3937_RS16990	0.43	-0.3
3,863,647	+		DDA3937_RS16990	0.43	+0.9
3,863,647	+		DDA3937_RS16990	0.43	-0.8
3,863,675	+		DDA3937_RS16990	0.46	-1.9
3,863,675	+		DDA3937_RS16990	0.46	-0.1
3,863,676	-		DDA3937_RS16990	0.46	-1.9
3,863,676	-		DDA3937_RS16990	0.46	+1.5
3,863,676	-		DDA3937_RS16990	0.46	+0.2
3,863,676	-		DDA3937_RS16990	0.46	+0.3
3,863,682	+		DDA3937_RS16990	0.46	-0.1
3,863,682	+		DDA3937_RS16990	0.46	-1.9
3,863,682	+		DDA3937_RS16990	0.46	-1.5
3,863,683	-		DDA3937_RS16990	0.46	-1.4
3,863,683	-		DDA3937_RS16990	0.46	+1.3
3,863,683	-		DDA3937_RS16990	0.46	-0.2
3,863,683	-		DDA3937_RS16990	0.46	+0.2
3,863,683	-		DDA3937_RS16990	0.46	+1.5
3,863,683	-		DDA3937_RS16990	0.46	+0.4
3,863,683	-		DDA3937_RS16990	0.46	+1.1
3,863,717	-		DDA3937_RS16990	0.50	-0.2
3,863,719	+		DDA3937_RS16990	0.50	+0.2
3,863,719	+		DDA3937_RS16990	0.50	-0.3
3,863,719	+		DDA3937_RS16990	0.50	-2.7
3,863,720	-		DDA3937_RS16990	0.50	-1.4
3,863,810	+		DDA3937_RS16990	0.58	+0.2
3,863,810	+		DDA3937_RS16990	0.58	-0.8
3,863,811	-		DDA3937_RS16990	0.59	-0.3
3,863,811	-		DDA3937_RS16990	0.59	+0.4
3,863,812	+		DDA3937_RS16990	0.59	-1.9
3,863,874	-		DDA3937_RS16990	0.64	-0.2
3,863,906	+		DDA3937_RS16990	0.68	-0.1
3,863,916	+		DDA3937_RS16990	0.68	+1.7
3,863,917	-		DDA3937_RS16990	0.69	+0.5
3,863,927	+		DDA3937_RS16990	0.70	+0.3
3,863,928	-		DDA3937_RS16990	0.70	-1.3
3,864,013	-				+0.5
3,864,013	-		DDA3937_RS16990	0.78	+0.7
3,864,024	-		DDA3937_RS16990	0.79	+0.1
3,864,092	+		DDA3937_RS16990	0.85	-1.4
3,864,093	-		DDA3937_RS16990	0.85	-0.2
3,864,100	-		DDA3937_RS16990	0.86	-1.3
3,864,133	+		DDA3937_RS16990	0.89	+0.4
3,864,133	+		DDA3937_RS16990	0.89	+1.8
3,864,134	-		DDA3937_RS16990	0.89	-1.4
3,864,136	+		DDA3937_RS16990	0.89	-0.3
3,864,136	+		DDA3937_RS16990	0.89	-0.1
3,864,136	+		DDA3937_RS16990	0.89	-1.0
3,864,136	+		DDA3937_RS16990	0.89	+1.0
3,864,137	-		DDA3937_RS16990	0.89	-1.0
3,864,137	-		DDA3937_RS16990	0.89	-0.8
3,864,137	-		DDA3937_RS16990	0.89	-0.7
3,864,137	-		DDA3937_RS16990	0.89	-0.6
3,864,137	-		DDA3937_RS16990	0.89	-0.4
3,864,234	-				-0.5
3,864,360	-				-0.8
3,864,474	+		DDA3937_RS16995	0.10	+1.0
3,864,475	-		DDA3937_RS16995	0.10	-0.9
3,864,506	+		DDA3937_RS16995	0.12	+0.9
3,864,506	+		DDA3937_RS16995	0.12	-0.8
3,864,507	-		DDA3937_RS16995	0.12	-0.3
3,864,507	-		DDA3937_RS16995	0.12	+0.9
3,864,524	+				+0.2
3,864,525	-		DDA3937_RS16995	0.12	+0.2
3,864,552	+		DDA3937_RS16995	0.14	-0.8
3,864,553	-		DDA3937_RS16995	0.14	-2.5
3,864,553	-		DDA3937_RS16995	0.14	-2.3
3,864,553	-		DDA3937_RS16995	0.14	-1.0
3,864,554	+		DDA3937_RS16995	0.14	-1.5
3,864,554	+		DDA3937_RS16995	0.14	-1.1
3,864,554	+				+0.2
3,864,555	-		DDA3937_RS16995	0.14	-1.4
3,864,555	-		DDA3937_RS16995	0.14	-0.1
3,864,582	+		DDA3937_RS16995	0.15	-1.3
3,864,583	-		DDA3937_RS16995	0.15	-0.4
3,864,729	+		DDA3937_RS16995	0.22	+0.2
3,864,729	+		DDA3937_RS16995	0.22	-1.1
3,864,729	+		DDA3937_RS16995	0.22	+0.5
3,864,729	+		DDA3937_RS16995	0.22	+1.3
3,864,730	-		DDA3937_RS16995	0.22	-0.1
3,864,730	-		DDA3937_RS16995	0.22	-0.6
3,864,730	-		DDA3937_RS16995	0.22	-0.3
3,864,730	-		DDA3937_RS16995	0.22	-1.3
3,864,730	-		DDA3937_RS16995	0.22	+0.2
3,864,730	-		DDA3937_RS16995	0.22	-1.5
3,864,730	-		DDA3937_RS16995	0.22	-0.5
3,864,730	-		DDA3937_RS16995	0.22	+1.0
3,864,730	-		DDA3937_RS16995	0.22	+1.2
3,864,743	+		DDA3937_RS16995	0.22	-0.2
3,864,743	+		DDA3937_RS16995	0.22	-0.5
3,864,743	+		DDA3937_RS16995	0.22	-0.1
3,864,743	+		DDA3937_RS16995	0.22	-0.2
3,864,744	-		DDA3937_RS16995	0.23	+0.4
3,864,744	-		DDA3937_RS16995	0.23	-0.3
3,864,744	-		DDA3937_RS16995	0.23	-0.1
3,864,765	+		DDA3937_RS16995	0.23	+0.9
3,864,765	+		DDA3937_RS16995	0.23	-0.4
3,864,766	-		DDA3937_RS16995	0.24	-1.1
3,864,766	-		DDA3937_RS16995	0.24	+0.2
3,864,766	-		DDA3937_RS16995	0.24	-1.1
3,864,767	+		DDA3937_RS16995	0.24	-1.2
3,864,767	+		DDA3937_RS16995	0.24	-0.1
3,864,845	+		DDA3937_RS16995	0.27	+0.2
3,864,845	+		DDA3937_RS16995	0.27	-0.3
3,864,846	-		DDA3937_RS16995	0.27	-0.3
3,864,852	+		DDA3937_RS16995	0.27	+0.4
3,864,852	+		DDA3937_RS16995	0.27	-1.0
3,864,855	+		DDA3937_RS16995	0.28	+0.9
3,864,855	+		DDA3937_RS16995	0.28	-1.1
3,864,855	+		DDA3937_RS16995	0.28	+3.9
3,864,856	-		DDA3937_RS16995	0.28	-0.1
3,864,856	-		DDA3937_RS16995	0.28	-1.2
3,864,856	-		DDA3937_RS16995	0.28	-0.8
3,864,856	-		DDA3937_RS16995	0.28	-0.1
3,864,856	-		DDA3937_RS16995	0.28	-1.1
3,864,871	+		DDA3937_RS16995	0.28	+0.3
3,864,872	-		DDA3937_RS16995	0.28	-0.1
3,864,933	-		DDA3937_RS16995	0.31	-0.5
3,864,941	+		DDA3937_RS16995	0.32	-0.4
3,864,941	+		DDA3937_RS16995	0.32	+0.2
3,864,941	+		DDA3937_RS16995	0.32	-1.9
3,864,942	-		DDA3937_RS16995	0.32	-1.6
3,864,942	-		DDA3937_RS16995	0.32	-0.4
3,864,942	-		DDA3937_RS16995	0.32	-0.3
3,864,942	-		DDA3937_RS16995	0.32	-0.4
3,864,966	+		DDA3937_RS16995	0.33	-1.2
3,864,966	+		DDA3937_RS16995	0.33	-2.0
3,864,966	+		DDA3937_RS16995	0.33	+0.2
3,864,966	+		DDA3937_RS16995	0.33	+0.4
3,864,966	+		DDA3937_RS16995	0.33	+0.0
3,864,967	-		DDA3937_RS16995	0.33	+0.1
3,864,967	-		DDA3937_RS16995	0.33	-1.9
3,864,967	-		DDA3937_RS16995	0.33	-0.6
3,864,968	+		DDA3937_RS16995	0.33	+0.6
3,864,968	+		DDA3937_RS16995	0.33	+0.0
3,864,968	+		DDA3937_RS16995	0.33	-0.2
3,864,968	+		DDA3937_RS16995	0.33	+1.3
3,864,968	+		DDA3937_RS16995	0.33	+0.1
3,864,968	+		DDA3937_RS16995	0.33	-0.8
3,864,968	+		DDA3937_RS16995	0.33	-0.8
3,864,968	+		DDA3937_RS16995	0.33	+0.0
3,864,968	+		DDA3937_RS16995	0.33	-1.0
3,864,969	-		DDA3937_RS16995	0.33	-0.7
3,864,969	-		DDA3937_RS16995	0.33	-0.3
3,864,969	-		DDA3937_RS16995	0.33	+0.5
3,864,969	-		DDA3937_RS16995	0.33	+0.3
3,864,969	-		DDA3937_RS16995	0.33	-1.6
3,864,969	-		DDA3937_RS16995	0.33	-2.0
3,864,969	-		DDA3937_RS16995	0.33	-1.9
3,864,969	-		DDA3937_RS16995	0.33	+0.4
3,864,969	-		DDA3937_RS16995	0.33	-0.6
3,864,969	-				-0.5
3,864,969	-		DDA3937_RS16995	0.33	-0.4
3,864,969	-		DDA3937_RS16995	0.33	-1.2
3,864,969	-		DDA3937_RS16995	0.33	-0.8
3,864,969	-		DDA3937_RS16995	0.33	-0.6
3,864,973	+		DDA3937_RS16995	0.33	-1.9
3,865,028	+		DDA3937_RS16995	0.36	-0.8
3,865,028	+		DDA3937_RS16995	0.36	+1.1
3,865,029	-		DDA3937_RS16995	0.36	+0.4
3,865,029	-		DDA3937_RS16995	0.36	-0.1
3,865,029	-		DDA3937_RS16995	0.36	-1.1
3,865,029	-		DDA3937_RS16995	0.36	-0.1
3,865,032	+		DDA3937_RS16995	0.36	-0.0
3,865,032	+		DDA3937_RS16995	0.36	+0.1
3,865,142	+		DDA3937_RS16995	0.41	-1.6
3,865,160	+		DDA3937_RS16995	0.42	+1.1
3,865,227	-		DDA3937_RS16995	0.45	-1.7
3,865,253	+		DDA3937_RS16995	0.46	+0.7
3,865,253	+		DDA3937_RS16995	0.46	-2.2
3,865,253	+		DDA3937_RS16995	0.46	+1.7
3,865,253	+		DDA3937_RS16995	0.46	+1.5
3,865,253	+		DDA3937_RS16995	0.46	-0.9
3,865,254	-		DDA3937_RS16995	0.46	-0.8
3,865,254	-		DDA3937_RS16995	0.46	+1.0
3,865,254	-		DDA3937_RS16995	0.46	-1.4
3,865,254	-		DDA3937_RS16995	0.46	-0.6
3,865,254	-		DDA3937_RS16995	0.46	+0.7
3,865,285	+		DDA3937_RS16995	0.47	+1.3
3,865,286	-		DDA3937_RS16995	0.47	-1.5
3,865,317	+		DDA3937_RS16995	0.49	-1.3
3,865,318	-		DDA3937_RS16995	0.49	-0.3
3,865,318	-		DDA3937_RS16995	0.49	-1.1
3,865,338	+		DDA3937_RS16995	0.50	+0.7
3,865,338	+		DDA3937_RS16995	0.50	+1.5
3,865,338	+		DDA3937_RS16995	0.50	-0.6
3,865,338	+		DDA3937_RS16995	0.50	+0.2
3,865,339	-		DDA3937_RS16995	0.50	-1.1
3,865,339	-		DDA3937_RS16995	0.50	+2.1
3,865,339	-		DDA3937_RS16995	0.50	+1.4
3,865,370	+		DDA3937_RS16995	0.51	-0.8
3,865,370	+		DDA3937_RS16995	0.51	-0.9
3,865,371	-		DDA3937_RS16995	0.51	+0.4
3,865,371	-		DDA3937_RS16995	0.51	-0.1
3,865,389	+		DDA3937_RS16995	0.52	-0.0
3,865,389	+		DDA3937_RS16995	0.52	-1.2
3,865,496	+		DDA3937_RS16995	0.57	+0.1
3,865,497	-		DDA3937_RS16995	0.57	-0.8
3,865,611	-		DDA3937_RS16995	0.62	-1.1
3,865,611	-		DDA3937_RS16995	0.62	-1.1
3,865,638	+		DDA3937_RS16995	0.64	+1.4
3,865,639	-		DDA3937_RS16995	0.64	-0.1
3,865,639	-		DDA3937_RS16995	0.64	-0.8
3,865,662	+		DDA3937_RS16995	0.65	+0.1
3,865,731	+		DDA3937_RS16995	0.68	+2.7
3,865,732	-		DDA3937_RS16995	0.68	-0.3
3,865,854	-		DDA3937_RS16995	0.73	-0.4
3,865,908	+		DDA3937_RS16995	0.76	-0.4
3,865,909	-		DDA3937_RS16995	0.76	+1.2
3,865,937	+		DDA3937_RS16995	0.77	-0.8
3,866,013	+		DDA3937_RS16995	0.81	-0.1
3,866,014	-		DDA3937_RS16995	0.81	+0.6
3,866,059	-		DDA3937_RS16995	0.83	+0.4
3,866,123	+		DDA3937_RS16995	0.86	-1.6
3,866,123	+		DDA3937_RS16995	0.86	-0.2
3,866,124	-		DDA3937_RS16995	0.86	-0.6
3,866,124	-		DDA3937_RS16995	0.86	-0.5
3,866,195	+		DDA3937_RS16995	0.89	-0.5
3,866,224	+				+1.2
3,866,306	-				+0.3
3,866,306	-				-0.3
3,866,325	+				+0.7
3,866,325	+				-0.8
3,866,326	-				+0.2
3,866,326	-				-0.1
3,866,364	+				+0.3
3,866,364	+				-0.0
3,866,365	-				+0.5
3,866,365	-				-0.3
3,866,439	+				-0.1
3,866,453	-				+1.7
3,866,453	-				+0.4
3,866,453	-				+2.5
3,866,481	+				+1.2
3,866,496	+				-0.1
3,866,499	-				+0.1
3,866,499	-				+0.3
3,866,558	+				-1.9
3,866,558	+				-2.1
3,866,558	+				+0.7
3,866,559	-				+0.0
3,866,581	-				-0.6
3,866,609	+				-0.1
3,866,610	-				-0.8
3,866,682	+				-1.6
3,866,683	-				+2.2
3,866,717	+				-0.8
3,866,755	+				-1.2
3,867,281	-		DDA3937_RS17000	0.41	+0.4