Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16385

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,737,386	+		DDA3937_RS16380	0.38	-2.4
3,737,386	+		DDA3937_RS16380	0.38	+0.3
3,737,386	+		DDA3937_RS16380	0.38	+0.5
3,737,386	+		DDA3937_RS16380	0.38	-0.3
3,737,386	+		DDA3937_RS16380	0.38	-1.5
3,737,387	-		DDA3937_RS16380	0.38	-0.1
3,737,387	-		DDA3937_RS16380	0.38	-1.5
3,737,459	+		DDA3937_RS16380	0.43	+0.2
3,737,742	-		DDA3937_RS16380	0.65	-1.0
3,737,742	-		DDA3937_RS16380	0.65	-1.2
3,737,781	+		DDA3937_RS16380	0.68	-1.5
3,737,781	+		DDA3937_RS16380	0.68	-1.8
3,737,874	+		DDA3937_RS16380	0.76	-2.7
3,738,022	+		DDA3937_RS16380	0.87	-0.8
3,738,022	+		DDA3937_RS16380	0.87	-1.9
3,738,022	+		DDA3937_RS16380	0.87	-1.1
3,738,023	-		DDA3937_RS16380	0.87	-0.9
3,738,023	-		DDA3937_RS16380	0.87	+0.4
3,738,023	-		DDA3937_RS16380	0.87	-0.3
3,738,052	+		DDA3937_RS16380	0.90	-3.1
3,738,052	+		DDA3937_RS16380	0.90	-1.2
3,738,099	+				-0.9
3,738,099	+				-0.4
3,738,099	+				+0.9
3,738,099	+				-1.1
3,738,100	-				+6.1
3,738,107	+				-1.1
3,738,107	+				-1.1
3,738,108	-				+1.8
3,738,108	-				-2.1
3,738,147	+				-0.9
3,738,147	+				-1.4
3,738,183	+				-0.2
3,738,183	+				-2.2
3,738,184	-				+0.0
3,738,271	-				-0.7
3,738,414	+		DDA3937_RS16385	0.11	-0.0
3,738,415	-		DDA3937_RS16385	0.11	-1.7
3,738,415	-		DDA3937_RS16385	0.11	-0.2
3,738,415	-		DDA3937_RS16385	0.11	-1.3
3,738,451	+		DDA3937_RS16385	0.14	+2.5
3,738,472	+		DDA3937_RS16385	0.15	-0.2
3,738,473	-		DDA3937_RS16385	0.15	+0.5
3,738,567	+		DDA3937_RS16385	0.21	-1.5
3,738,568	-		DDA3937_RS16385	0.21	+1.5
3,738,568	-		DDA3937_RS16385	0.21	-0.0
3,738,748	+		DDA3937_RS16385	0.32	-0.8
3,738,874	+		DDA3937_RS16385	0.40	-0.5
3,738,874	+		DDA3937_RS16385	0.40	-0.9
3,738,914	-		DDA3937_RS16385	0.42	+1.5
3,738,914	-		DDA3937_RS16385	0.42	+1.7
3,738,914	-		DDA3937_RS16385	0.42	-0.6
3,738,916	+		DDA3937_RS16385	0.43	-0.4
3,738,917	-		DDA3937_RS16385	0.43	-0.5
3,738,917	-		DDA3937_RS16385	0.43	-1.1
3,738,919	+		DDA3937_RS16385	0.43	+0.1
3,738,919	+		DDA3937_RS16385	0.43	+0.0
3,738,919	+		DDA3937_RS16385	0.43	-1.8
3,738,919	+		DDA3937_RS16385	0.43	-1.2
3,738,919	+		DDA3937_RS16385	0.43	-0.4
3,738,920	-		DDA3937_RS16385	0.43	+2.8
3,738,920	-		DDA3937_RS16385	0.43	-2.3
3,738,937	+		DDA3937_RS16385	0.44	-0.1
3,738,937	+		DDA3937_RS16385	0.44	-0.4
3,739,214	-		DDA3937_RS16385	0.61	+0.8
3,739,253	-		DDA3937_RS16385	0.64	-0.7
3,739,271	+		DDA3937_RS16385	0.65	-1.9
3,739,271	+		DDA3937_RS16385	0.65	-0.0
3,739,272	-		DDA3937_RS16385	0.65	+0.2
3,739,272	-		DDA3937_RS16385	0.65	-1.8
3,739,288	+		DDA3937_RS16385	0.66	+0.3
3,739,288	+		DDA3937_RS16385	0.66	+1.5
3,739,289	-		DDA3937_RS16385	0.66	-0.2
3,739,289	-		DDA3937_RS16385	0.66	-0.3
3,739,289	-		DDA3937_RS16385	0.66	-1.1
3,739,346	+		DDA3937_RS16385	0.69	-0.8
3,739,346	+		DDA3937_RS16385	0.69	+1.1
3,739,346	+		DDA3937_RS16385	0.69	+0.1
3,739,347	-		DDA3937_RS16385	0.70	+1.7
3,739,462	+		DDA3937_RS16385	0.77	-1.3
3,739,463	-		DDA3937_RS16385	0.77	-0.5
3,739,463	-		DDA3937_RS16385	0.77	-0.6
3,739,463	-		DDA3937_RS16385	0.77	+0.2
3,739,463	-		DDA3937_RS16385	0.77	+0.7
3,739,495	+				+0.5
3,739,496	-		DDA3937_RS16385	0.79	-2.8
3,739,496	-		DDA3937_RS16385	0.79	+1.1
3,739,507	+		DDA3937_RS16385	0.80	-0.8
3,739,508	-		DDA3937_RS16385	0.80	-0.4
3,739,508	-		DDA3937_RS16385	0.80	-1.0
3,739,508	-		DDA3937_RS16385	0.80	+0.9
3,739,508	-		DDA3937_RS16385	0.80	-0.4
3,739,508	-		DDA3937_RS16385	0.80	-0.2
3,739,512	+		DDA3937_RS16385	0.80	+0.3
3,739,512	+		DDA3937_RS16385	0.80	+0.0
3,739,512	+		DDA3937_RS16385	0.80	+1.5
3,739,513	-		DDA3937_RS16385	0.80	-0.2
3,739,513	-		DDA3937_RS16385	0.80	+0.5
3,739,513	-		DDA3937_RS16385	0.80	-0.2
3,739,513	-		DDA3937_RS16385	0.80	+1.7
3,739,549	+		DDA3937_RS16385	0.82	-0.3
3,739,549	+		DDA3937_RS16385	0.82	-0.9
3,739,550	-		DDA3937_RS16385	0.82	-1.3
3,739,550	-		DDA3937_RS16385	0.82	-0.1
3,739,658	-		DDA3937_RS16385	0.89	-1.7
3,739,721	+				-0.6
3,739,721	+				-0.4
3,739,721	+				+0.3
3,739,721	+				-1.8
3,739,722	-				+0.9
3,739,722	-				-0.8
3,739,722	-				+0.5
3,739,722	-				+0.2
3,739,722	-				-0.2
3,739,741	+				-1.2
3,739,741	+				-1.4
3,739,742	-				+0.8
3,739,742	-				-1.5
3,739,742	-				-0.6
3,739,742	-				+1.1
3,739,836	+				-0.5
3,739,836	+				+0.2
3,739,860	+				-0.7
3,739,860	+				-0.9
3,739,860	+				-0.1
3,739,860	+				-0.5
3,739,861	-				+0.7
3,739,861	-				-0.4
3,739,890	+				-0.3
3,739,890	+				+0.4
3,739,891	-				-1.3
3,739,891	-				-0.8
3,739,891	-				+0.2
3,739,891	-				-0.1
3,739,891	-				-1.1
3,740,043	+		DDA3937_RS16390	0.21	+0.0
3,740,259	+		DDA3937_RS16390	0.43	-1.8
3,740,259	+		DDA3937_RS16390	0.43	-1.1
3,740,259	+		DDA3937_RS16390	0.43	+0.8
3,740,259	+		DDA3937_RS16390	0.43	+0.0
3,740,259	+		DDA3937_RS16390	0.43	+0.3
3,740,259	+		DDA3937_RS16390	0.43	+0.7
3,740,259	+		DDA3937_RS16390	0.43	+0.8
3,740,259	+		DDA3937_RS16390	0.43	-2.6
3,740,259	+		DDA3937_RS16390	0.43	+0.3
3,740,260	-		DDA3937_RS16390	0.43	-1.3
3,740,260	-		DDA3937_RS16390	0.43	-1.1
3,740,260	-		DDA3937_RS16390	0.43	+0.5
3,740,260	-		DDA3937_RS16390	0.43	-0.9
3,740,260	-		DDA3937_RS16390	0.43	-0.0
3,740,261	+		DDA3937_RS16390	0.44	+0.2
3,740,262	-		DDA3937_RS16390	0.44	+0.2
3,740,267	+		DDA3937_RS16390	0.44	-0.6
3,740,267	+		DDA3937_RS16390	0.44	-0.9
3,740,267	+		DDA3937_RS16390	0.44	-0.6
3,740,349	+		DDA3937_RS16390	0.53	+0.9
3,740,349	+		DDA3937_RS16390	0.53	-0.3
3,740,350	-		DDA3937_RS16390	0.53	-1.5
3,740,484	+		DDA3937_RS16390	0.67	+1.9
3,740,484	+		DDA3937_RS16390	0.67	-0.1
3,740,484	+		DDA3937_RS16390	0.67	+0.5
3,740,485	-		DDA3937_RS16390	0.67	-1.2
3,740,485	-		DDA3937_RS16390	0.67	-2.0
3,740,485	-		DDA3937_RS16390	0.67	+0.5
3,740,526	-		DDA3937_RS16390	0.72	+0.4
3,740,590	+		DDA3937_RS16390	0.78	-1.5
3,740,590	+		DDA3937_RS16390	0.78	-0.1
3,740,590	+		DDA3937_RS16390	0.78	-0.5
3,740,590	+		DDA3937_RS16390	0.78	+0.6
3,740,591	-		DDA3937_RS16390	0.78	-0.1
3,740,591	-		DDA3937_RS16390	0.78	-1.5
3,740,591	-		DDA3937_RS16390	0.78	-0.0
3,740,596	-		DDA3937_RS16390	0.79	+1.0
3,740,727	+				-0.4
3,740,728	-				+0.5
3,740,728	-				+0.9
3,740,728	-				+1.5
3,740,728	-				+1.5
3,740,728	-				-1.2
3,740,761	-				+0.2
3,740,771	-				-0.5
3,740,788	-				-0.5
3,740,798	+				-0.2
3,740,799	-				+0.0