Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16100

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,676,476	-		DDA3937_RS16095	0.72	-0.3
3,676,653	-		DDA3937_RS16095	0.84	+0.7
3,676,653	-		DDA3937_RS16095	0.84	-0.5
3,676,653	-		DDA3937_RS16095	0.84	-0.3
3,676,751	-				+1.2
3,677,200	+				+0.4
3,677,200	+				-0.2
3,677,200	+				+0.7
3,677,202	+				-0.5
3,677,202	+				+1.2
3,677,202	+				+0.5
3,677,281	-				-1.7
3,677,281	-				+0.2
3,677,291	+				-1.6
3,677,291	+				+3.1
3,677,291	+				-1.1
3,677,291	+				+0.5
3,677,291	+				-1.0
3,677,292	-				-0.7
3,677,294	+				-0.2
3,677,294	+				-1.1
3,677,294	+				-0.1
3,677,295	-				-0.0
3,677,298	+				+0.5
3,677,299	-				-0.1
3,677,299	-				+0.9
3,677,346	+				-1.3
3,677,346	+				-0.9
3,677,346	+				-0.8
3,677,347	-				+2.4
3,677,347	-				-0.1
3,677,355	-				+0.2
3,677,355	-				-1.7
3,677,435	+				-0.4
3,677,435	+				-1.5
3,677,436	-				-1.1
3,677,436	-				-0.4
3,677,436	-				-0.8
3,677,560	+				+1.5
3,677,561	-				+0.3
3,677,561	-				-0.1
3,677,562	+				-1.2
3,677,563	-				-0.5
3,677,586	+				-0.5
3,677,586	+				-0.6
3,677,620	+				+1.5
3,677,620	+		DDA3937_RS16100	0.10	-2.2
3,677,620	+		DDA3937_RS16100	0.10	-0.5
3,677,620	+		DDA3937_RS16100	0.10	-2.6
3,677,621	-		DDA3937_RS16100	0.10	-0.4
3,677,621	-		DDA3937_RS16100	0.10	-2.0
3,677,623	+		DDA3937_RS16100	0.10	-0.1
3,677,623	+		DDA3937_RS16100	0.10	+0.3
3,677,623	+		DDA3937_RS16100	0.10	-1.1
3,677,674	+		DDA3937_RS16100	0.12	+1.1
3,677,733	+		DDA3937_RS16100	0.14	+1.3
3,677,733	+		DDA3937_RS16100	0.14	-0.5
3,677,734	-		DDA3937_RS16100	0.15	+0.5
3,677,734	-		DDA3937_RS16100	0.15	+0.1
3,677,852	+		DDA3937_RS16100	0.19	-0.7
3,677,852	+		DDA3937_RS16100	0.19	+0.5
3,677,852	+		DDA3937_RS16100	0.19	-0.5
3,677,853	-		DDA3937_RS16100	0.19	-1.2
3,677,853	-		DDA3937_RS16100	0.19	-0.1
3,677,853	-		DDA3937_RS16100	0.19	-0.6
3,677,853	-		DDA3937_RS16100	0.19	-2.9
3,677,853	-		DDA3937_RS16100	0.19	+0.4
3,677,855	+		DDA3937_RS16100	0.19	-0.1
3,677,855	+		DDA3937_RS16100	0.19	+0.5
3,677,855	+		DDA3937_RS16100	0.19	-0.5
3,677,856	-		DDA3937_RS16100	0.19	+2.2
3,677,856	-		DDA3937_RS16100	0.19	-1.3
3,677,864	+		DDA3937_RS16100	0.20	+0.3
3,677,864	+		DDA3937_RS16100	0.20	-1.5
3,677,865	-		DDA3937_RS16100	0.20	-3.0
3,677,922	+		DDA3937_RS16100	0.22	-0.8
3,677,923	-		DDA3937_RS16100	0.22	+1.2
3,677,952	+		DDA3937_RS16100	0.23	-2.6
3,677,953	-		DDA3937_RS16100	0.23	+0.0
3,678,035	-		DDA3937_RS16100	0.26	-1.7
3,678,035	-		DDA3937_RS16100	0.26	-0.5
3,678,035	-		DDA3937_RS16100	0.26	-1.5
3,678,035	-		DDA3937_RS16100	0.26	-0.3
3,678,035	-		DDA3937_RS16100	0.26	-0.4
3,678,035	-		DDA3937_RS16100	0.26	-1.6
3,678,035	-		DDA3937_RS16100	0.26	-0.6
3,678,035	-		DDA3937_RS16100	0.26	-2.6
3,678,035	-		DDA3937_RS16100	0.26	-0.8
3,678,035	-		DDA3937_RS16100	0.26	-0.1
3,678,040	+				+0.2
3,678,040	+		DDA3937_RS16100	0.26	+0.5
3,678,184	+		DDA3937_RS16100	0.32	-0.4
3,678,184	+		DDA3937_RS16100	0.32	+0.7
3,678,185	-		DDA3937_RS16100	0.32	+0.5
3,678,341	+		DDA3937_RS16100	0.38	-3.3
3,678,511	+		DDA3937_RS16100	0.45	-1.3
3,678,676	+		DDA3937_RS16100	0.51	+0.1
3,678,754	+		DDA3937_RS16100	0.54	+0.2
3,678,755	-		DDA3937_RS16100	0.54	+0.9
3,678,770	-		DDA3937_RS16100	0.55	-0.3
3,678,796	-		DDA3937_RS16100	0.56	-1.8
3,678,864	+		DDA3937_RS16100	0.58	-0.3
3,678,865	-		DDA3937_RS16100	0.58	-1.5
3,678,865	-		DDA3937_RS16100	0.58	-0.4
3,678,890	-		DDA3937_RS16100	0.59	-0.7
3,678,898	+		DDA3937_RS16100	0.60	-0.5
3,678,898	+		DDA3937_RS16100	0.60	+0.5
3,678,898	+		DDA3937_RS16100	0.60	-0.8
3,678,969	+		DDA3937_RS16100	0.63	-1.0
3,678,969	+		DDA3937_RS16100	0.63	-0.4
3,678,969	+		DDA3937_RS16100	0.63	-1.1
3,678,969	+		DDA3937_RS16100	0.63	-1.5
3,678,969	+		DDA3937_RS16100	0.63	-2.5
3,678,970	-		DDA3937_RS16100	0.63	-0.9
3,678,970	-		DDA3937_RS16100	0.63	+0.1
3,678,970	-		DDA3937_RS16100	0.63	-1.3
3,679,114	+		DDA3937_RS16100	0.68	-2.2
3,679,114	+		DDA3937_RS16100	0.68	-0.8
3,679,231	+		DDA3937_RS16100	0.73	+1.0
3,679,231	+		DDA3937_RS16100	0.73	+0.5
3,679,231	+				-1.1
3,679,262	-		DDA3937_RS16100	0.74	-0.8
3,679,267	+		DDA3937_RS16100	0.74	-0.3
3,679,267	+		DDA3937_RS16100	0.74	+0.1
3,679,590	-		DDA3937_RS16100	0.87	+1.5
3,679,605	-		DDA3937_RS16100	0.87	+0.9
3,679,605	-		DDA3937_RS16100	0.87	-1.3
3,679,605	-		DDA3937_RS16100	0.87	-0.3
3,679,619	-		DDA3937_RS16100	0.88	-0.1
3,679,658	-		DDA3937_RS16100	0.89	-1.0
3,679,658	-		DDA3937_RS16100	0.89	+1.5
3,679,658	-		DDA3937_RS16100	0.89	+0.8
3,679,721	+				+0.7
3,679,849	+				-0.7
3,679,915	+				-0.5
3,679,916	-				-0.0
3,679,916	-				+1.1
3,679,934	-				-0.5
3,679,934	-				-1.7
3,679,934	-				-1.3
3,679,934	-				+0.2
3,679,934	-				-0.0
3,679,945	+				-1.2
3,679,945	+				-0.9
3,679,945	+				-0.3
3,679,945	+				+0.7
3,679,945	+				-0.9
3,679,945	+				+1.2
3,679,945	+				-0.1
3,679,946	-				-0.4
3,679,946	-				-0.4
3,679,949	+				+0.1
3,679,949	+				-1.4
3,679,949	+				+0.1
3,679,950	-				-0.9
3,679,950	-				-0.6
3,679,950	-				-1.7
3,679,950	-				-0.4
3,679,950	-				+1.0
3,679,975	+				+0.2
3,679,975	+				+0.9
3,679,975	+				+2.9
3,679,975	+				-1.0
3,679,976	-				-0.5
3,680,017	+				+0.3
3,680,020	+				-2.3
3,680,020	+				-0.7
3,680,020	+				-0.2
3,680,021	-				-2.2
3,680,024	-				+0.7
3,680,066	-				-0.5
3,680,066	-				+0.3
3,680,070	+				-1.1
3,680,070	+				+0.3
3,680,071	-				+0.3
3,680,073	-				-0.5
3,680,073	-				+0.5
3,680,096	-				-3.0
3,680,153	-		DDA3937_RS16105	0.12	-0.7
3,680,153	-		DDA3937_RS16105	0.12	-0.3
3,680,221	+		DDA3937_RS16105	0.21	-0.1
3,680,221	+		DDA3937_RS16105	0.21	+0.6
3,680,237	-		DDA3937_RS16105	0.23	-1.3
3,680,284	+		DDA3937_RS16105	0.30	-0.7
3,680,284	+		DDA3937_RS16105	0.30	-1.5
3,680,384	+		DDA3937_RS16105	0.43	-0.3
3,680,385	-		DDA3937_RS16105	0.44	+0.0
3,680,524	+		DDA3937_RS16105	0.63	-2.1
3,680,572	+		DDA3937_RS16105	0.69	-1.5
3,680,591	+		DDA3937_RS16105	0.72	-0.7
3,680,591	+		DDA3937_RS16105	0.72	+0.6
3,680,591	+				-0.1
3,680,591	+		DDA3937_RS16105	0.72	-1.3
3,680,592	-		DDA3937_RS16105	0.72	-1.8
3,680,707	+		DDA3937_RS16105	0.88	-1.3
3,680,708	-		DDA3937_RS16105	0.88	+0.1
3,680,709	+		DDA3937_RS16105	0.88	-1.3
3,680,709	+		DDA3937_RS16105	0.88	-2.4
3,680,710	-		DDA3937_RS16105	0.88	-0.5
3,680,710	-		DDA3937_RS16105	0.88	+1.5
3,680,710	-		DDA3937_RS16105	0.88	+0.2
3,680,710	-		DDA3937_RS16105	0.88	-0.3
3,680,746	+				-1.5
3,680,746	+				+0.7
3,680,746	+				-0.3
3,680,786	+				+0.4
3,680,786	+				-0.5
3,680,786	+				+0.7
3,680,786	+				+1.5
3,680,787	-				+0.5
3,680,874	+				-0.9
3,680,874	+				-0.1
3,680,874	+				-0.8
3,680,874	+				-1.8
3,680,875	-				-0.2
3,680,875	-				-1.4
3,680,875	-				-1.3
3,680,875	-				-0.3
3,680,875	-				-0.1
3,680,875	-				-2.4
3,680,879	+				-0.9
3,680,879	+				-2.3
3,680,880	-				-1.7
3,680,924	+		DDA3937_RS16110	0.11	-3.7
3,680,925	-		DDA3937_RS16110	0.11	-0.6
3,680,925	-				+0.5
3,680,932	+		DDA3937_RS16110	0.12	-0.3
3,680,932	+		DDA3937_RS16110	0.12	+0.5
3,680,932	+		DDA3937_RS16110	0.12	-2.1
3,680,932	+		DDA3937_RS16110	0.12	+0.1
3,680,932	+		DDA3937_RS16110	0.12	-1.5
3,680,932	+		DDA3937_RS16110	0.12	-3.7
3,680,932	+				+2.5
3,680,932	+		DDA3937_RS16110	0.12	-1.3
3,680,933	-		DDA3937_RS16110	0.12	-0.9
3,680,933	-		DDA3937_RS16110	0.12	-2.6
3,680,933	-		DDA3937_RS16110	0.12	-2.7
3,680,933	-		DDA3937_RS16110	0.12	-2.7
3,680,933	-		DDA3937_RS16110	0.12	-1.2
3,680,933	-		DDA3937_RS16110	0.12	+0.1
3,680,933	-		DDA3937_RS16110	0.12	-0.3
3,680,933	-				+0.7
3,680,933	-		DDA3937_RS16110	0.12	-1.1
3,680,933	-		DDA3937_RS16110	0.12	-0.8
3,680,933	-		DDA3937_RS16110	0.12	-3.2
3,680,933	-		DDA3937_RS16110	0.12	-0.7
3,680,933	-		DDA3937_RS16110	0.12	-1.4
3,680,933	-		DDA3937_RS16110	0.12	-0.7
3,680,933	-		DDA3937_RS16110	0.12	-2.0
3,680,933	-		DDA3937_RS16110	0.12	-0.7
3,680,933	-		DDA3937_RS16110	0.12	-2.7
3,680,933	-		DDA3937_RS16110	0.12	-0.4