Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15925

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,644,807	-		DDA3937_RS15920	0.75	-0.8
3,644,810	+		DDA3937_RS15920	0.75	-0.9
3,644,810	+		DDA3937_RS15920	0.75	+0.1
3,644,810	+		DDA3937_RS15920	0.75	-0.9
3,644,810	+		DDA3937_RS15920	0.75	-0.3
3,644,810	+		DDA3937_RS15920	0.75	+0.2
3,644,810	+		DDA3937_RS15920	0.75	+1.0
3,644,811	-		DDA3937_RS15920	0.75	-0.3
3,644,811	-		DDA3937_RS15920	0.75	-1.0
3,644,811	-		DDA3937_RS15920	0.75	-1.1
3,644,811	-		DDA3937_RS15920	0.75	+0.2
3,644,861	-		DDA3937_RS15920	0.77	-0.0
3,644,919	+		DDA3937_RS15920	0.80	-1.7
3,644,919	+		DDA3937_RS15920	0.80	-0.6
3,644,919	+		DDA3937_RS15920	0.80	-0.7
3,644,920	-		DDA3937_RS15920	0.80	-0.9
3,645,057	+		DDA3937_RS15920	0.85	-3.2
3,645,058	-		DDA3937_RS15920	0.85	+3.6
3,645,263	+				-1.8
3,645,264	-				+0.3
3,645,264	-				+0.1
3,645,266	+				-0.5
3,645,266	+				-0.3
3,645,266	+				-1.9
3,645,266	+				+0.1
3,645,267	-				-0.4
3,645,267	-				-0.0
3,645,267	-				-1.5
3,645,267	-				-0.7
3,645,412	-				-1.0
3,645,443	+				-0.6
3,645,472	+				-0.1
3,645,472	+				-2.3
3,645,474	+				-0.2
3,645,474	+				-1.5
3,645,474	+				+0.4
3,645,474	+				+0.0
3,645,474	+				-1.7
3,645,474	+				+0.8
3,645,475	-				+1.0
3,645,475	-				-0.6
3,645,475	-				-0.4
3,645,475	-				-0.6
3,645,476	+				-0.6
3,645,476	+				-0.4
3,645,476	+				-0.3
3,645,476	+				+0.6
3,645,476	+				+0.1
3,645,476	+				+0.4
3,645,476	+				-1.4
3,645,476	+				+0.4
3,645,476	+				+0.2
3,645,476	+				+0.4
3,645,476	+				-0.8
3,645,476	+				-0.2
3,645,476	+				-1.7
3,645,476	+				-1.4
3,645,477	-				-0.5
3,645,477	-				+0.2
3,645,477	-				-0.6
3,645,477	-				+0.0
3,645,477	-				+0.4
3,645,477	-				-0.2
3,645,477	-				-0.2
3,645,477	-				+0.5
3,645,485	+				-0.3
3,645,486	-				+0.2
3,645,486	-				+0.1
3,645,486	-				+0.8
3,645,552	+				-0.9
3,645,552	+				+1.7
3,645,553	-				-0.3
3,645,574	+				-0.7
3,645,574	+				+1.9
3,645,574	+				+0.7
3,645,574	+				-0.3
3,645,575	-				-0.2
3,645,575	-				-0.2
3,645,575	-				-0.2
3,645,575	-				+0.3
3,645,575	-				+0.6
3,645,656	-				+0.1
3,645,672	+		DDA3937_RS15925	0.12	-2.0
3,645,672	+		DDA3937_RS15925	0.12	-1.7
3,645,672	+		DDA3937_RS15925	0.12	-2.5
3,645,673	-		DDA3937_RS15925	0.12	+0.2
3,645,673	-		DDA3937_RS15925	0.12	-0.9
3,645,673	-		DDA3937_RS15925	0.12	+0.1
3,645,673	-		DDA3937_RS15925	0.12	-0.7
3,645,673	-		DDA3937_RS15925	0.12	-0.5
3,645,673	-		DDA3937_RS15925	0.12	+0.1
3,645,924	+		DDA3937_RS15925	0.59	-0.7
3,645,924	+		DDA3937_RS15925	0.59	-0.9
3,645,925	-		DDA3937_RS15925	0.59	+1.4
3,645,925	-		DDA3937_RS15925	0.59	+0.1
3,645,925	-		DDA3937_RS15925	0.59	-1.4
3,645,953	+		DDA3937_RS15925	0.65	-0.2
3,645,954	-		DDA3937_RS15925	0.65	-1.4
3,645,954	-		DDA3937_RS15925	0.65	+5.8
3,645,954	-		DDA3937_RS15925	0.65	-1.1
3,646,071	-		DDA3937_RS15925	0.87	-0.2
3,646,184	-				+0.0
3,646,184	-				-1.6
3,646,199	+				-0.8
3,646,199	+				-1.2
3,646,200	-				-0.2
3,646,200	-				-0.7
3,646,200	-				+0.2
3,646,262	-		DDA3937_RS15930	0.15	-0.9
3,646,265	-		DDA3937_RS15930	0.15	-0.9
3,646,265	-		DDA3937_RS15930	0.15	-0.6
3,646,310	+				+1.8
3,646,310	+		DDA3937_RS15930	0.22	-0.4
3,646,340	+		DDA3937_RS15930	0.26	-0.7
3,646,340	+		DDA3937_RS15930	0.26	+0.7
3,646,340	+		DDA3937_RS15930	0.26	+6.3
3,646,341	-		DDA3937_RS15930	0.26	+0.2
3,646,341	-		DDA3937_RS15930	0.26	+0.0
3,646,341	-		DDA3937_RS15930	0.26	-0.7
3,646,341	-		DDA3937_RS15930	0.26	-0.8
3,646,348	+		DDA3937_RS15930	0.27	-0.9
3,646,348	+		DDA3937_RS15930	0.27	-0.6
3,646,349	-		DDA3937_RS15930	0.27	+1.2
3,646,349	-		DDA3937_RS15930	0.27	+0.2
3,646,396	+		DDA3937_RS15930	0.34	+0.1
3,646,463	+		DDA3937_RS15930	0.43	-1.4
3,646,464	-		DDA3937_RS15930	0.43	-1.5
3,646,513	-		DDA3937_RS15930	0.50	+0.1
3,646,513	-		DDA3937_RS15930	0.50	-0.7
3,646,513	-		DDA3937_RS15930	0.50	-0.5
3,646,521	+		DDA3937_RS15930	0.51	-0.6
3,646,522	-		DDA3937_RS15930	0.51	-1.6
3,646,522	-		DDA3937_RS15930	0.51	+0.5
3,646,550	+		DDA3937_RS15930	0.55	-0.2
3,646,550	+		DDA3937_RS15930	0.55	+0.4
3,646,551	-		DDA3937_RS15930	0.55	+0.1
3,646,552	+		DDA3937_RS15930	0.55	+0.0
3,646,552	+		DDA3937_RS15930	0.55	-3.3
3,646,552	+		DDA3937_RS15930	0.55	+0.7
3,646,553	-		DDA3937_RS15930	0.55	-2.1
3,646,553	-		DDA3937_RS15930	0.55	-0.0
3,646,562	-		DDA3937_RS15930	0.57	-0.6
3,646,575	+		DDA3937_RS15930	0.58	-0.3
3,646,575	+		DDA3937_RS15930	0.58	-0.5
3,646,576	-		DDA3937_RS15930	0.59	-2.7
3,646,576	-		DDA3937_RS15930	0.59	-1.2
3,646,595	+		DDA3937_RS15930	0.61	-0.2
3,646,595	+		DDA3937_RS15930	0.61	-1.0
3,646,595	+		DDA3937_RS15930	0.61	-0.8
3,646,596	-		DDA3937_RS15930	0.61	-0.2
3,646,677	+		DDA3937_RS15930	0.73	-0.6
3,646,677	+		DDA3937_RS15930	0.73	-0.8
3,646,745	+		DDA3937_RS15930	0.82	-0.6
3,646,746	-		DDA3937_RS15930	0.82	-0.5
3,646,746	-		DDA3937_RS15930	0.82	-0.1
3,646,764	+		DDA3937_RS15930	0.85	-1.3
3,646,764	+		DDA3937_RS15930	0.85	-0.9
3,646,764	+		DDA3937_RS15930	0.85	-0.9
3,646,765	-		DDA3937_RS15930	0.85	+0.1
3,646,796	+		DDA3937_RS15930	0.89	-0.6
3,646,797	-		DDA3937_RS15930	0.89	-1.9
3,646,797	-		DDA3937_RS15930	0.89	-0.9
3,646,807	+				+2.1
3,646,807	+				-1.0
3,646,807	+				-0.9
3,646,807	+				-2.2
3,646,807	+				-1.4
3,646,807	+				-0.1
3,646,807	+				-0.3
3,646,808	-				-1.2
3,646,808	-				-1.7
3,646,808	-				-1.5
3,646,808	-				+0.4
3,646,808	-				-0.9
3,646,808	-				-1.0
3,646,843	-				-0.9
3,646,872	-				-0.7
3,646,887	+				+0.9
3,646,887	+				-0.3
3,646,887	+				-0.8
3,646,888	-				-0.2
3,646,888	-				+3.3
3,646,888	-				+0.5
3,646,891	+				-1.2
3,646,891	+				-1.2
3,646,891	+				-1.8
3,646,892	-				-0.2
3,646,892	-				-1.6
3,646,892	-				-0.5
3,646,892	-				-0.2
3,646,894	+				-1.9
3,646,894	+				-0.3
3,646,894	+				-0.8
3,646,894	+				-3.0
3,646,894	+				-0.3
3,646,894	+				+1.8
3,646,895	-				+0.6
3,646,895	-				+0.2
3,646,895	-				-0.2
3,646,907	+				-0.2
3,646,907	+				-0.3
3,646,907	+				+0.8
3,646,907	+				+3.6
3,646,907	+				-0.2
3,646,908	-				+1.1
3,646,958	+				-1.6
3,646,958	+				-0.7
3,646,958	+				-1.2
3,646,972	+				-0.5
3,646,972	+				+0.4
3,646,972	+				+0.1
3,646,976	+				-1.4
3,646,976	+				-1.5
3,647,027	+				-1.2
3,647,027	+				-0.4
3,647,027	+				+1.9
3,647,027	+				+1.1
3,647,028	-				+0.2
3,647,028	-				-1.7
3,647,028	-				-1.7
3,647,028	-				-0.7