Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15580

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,565,274	+				+0.2
3,565,274	+				-1.1
3,565,274	+				+0.5
3,565,274	+				+1.1
3,565,274	+				+1.0
3,565,275	-				-1.2
3,565,275	-				+0.4
3,565,275	-				-1.8
3,565,275	-				+1.4
3,565,275	-				-1.5
3,565,275	-				-1.1
3,565,275	-				-0.2
3,565,275	-				-1.3
3,565,275	-				+0.8
3,565,275	-				-0.6
3,565,275	-				-0.2
3,565,275	-				-0.3
3,565,370	+		DDA3937_RS15575	0.12	+0.3
3,565,476	-		DDA3937_RS15575	0.25	-1.2
3,565,480	+		DDA3937_RS15575	0.26	-2.1
3,565,480	+		DDA3937_RS15575	0.26	-0.6
3,565,481	-		DDA3937_RS15575	0.26	-1.2
3,565,519	+		DDA3937_RS15575	0.31	-0.6
3,565,519	+		DDA3937_RS15575	0.31	+0.2
3,565,519	+		DDA3937_RS15575	0.31	-0.1
3,565,519	+		DDA3937_RS15575	0.31	-1.6
3,565,519	+		DDA3937_RS15575	0.31	+1.0
3,565,519	+		DDA3937_RS15575	0.31	-0.9
3,565,520	-		DDA3937_RS15575	0.31	+0.1
3,565,520	-		DDA3937_RS15575	0.31	-0.5
3,565,521	+		DDA3937_RS15575	0.31	-0.5
3,565,521	+		DDA3937_RS15575	0.31	-1.7
3,565,521	+		DDA3937_RS15575	0.31	-0.8
3,565,521	+		DDA3937_RS15575	0.31	-0.0
3,565,522	-		DDA3937_RS15575	0.31	+0.4
3,565,522	-		DDA3937_RS15575	0.31	+0.3
3,565,522	-		DDA3937_RS15575	0.31	-0.7
3,565,522	-		DDA3937_RS15575	0.31	-0.2
3,565,522	-		DDA3937_RS15575	0.31	-0.5
3,565,522	-		DDA3937_RS15575	0.31	+0.6
3,565,522	-		DDA3937_RS15575	0.31	+3.1
3,565,522	-		DDA3937_RS15575	0.31	-0.6
3,565,522	-		DDA3937_RS15575	0.31	-0.9
3,565,522	-		DDA3937_RS15575	0.31	+0.1
3,565,522	-		DDA3937_RS15575	0.31	+0.7
3,565,522	-		DDA3937_RS15575	0.31	+3.3
3,565,575	-		DDA3937_RS15575	0.38	+0.3
3,565,575	-		DDA3937_RS15575	0.38	-0.2
3,565,631	-		DDA3937_RS15575	0.45	-2.4
3,565,677	+		DDA3937_RS15575	0.51	-2.1
3,565,677	+		DDA3937_RS15575	0.51	-2.4
3,565,677	+		DDA3937_RS15575	0.51	+0.8
3,565,791	+		DDA3937_RS15575	0.65	-1.7
3,565,792	-		DDA3937_RS15575	0.65	-0.1
3,565,792	-		DDA3937_RS15575	0.65	+0.4
3,565,816	+		DDA3937_RS15575	0.68	-1.2
3,565,817	-		DDA3937_RS15575	0.68	+0.1
3,565,841	+		DDA3937_RS15575	0.71	+1.3
3,565,842	-		DDA3937_RS15575	0.72	+4.0
3,565,853	-		DDA3937_RS15575	0.73	-1.8
3,565,853	-		DDA3937_RS15575	0.73	-0.7
3,565,858	+		DDA3937_RS15575	0.74	-0.9
3,565,858	+		DDA3937_RS15575	0.74	-0.8
3,565,858	+		DDA3937_RS15575	0.74	-0.9
3,565,859	-		DDA3937_RS15575	0.74	-2.5
3,565,859	-		DDA3937_RS15575	0.74	-0.5
3,565,980	+		DDA3937_RS15575	0.89	-1.1
3,565,980	+		DDA3937_RS15575	0.89	-0.4
3,565,980	+		DDA3937_RS15575	0.89	-0.5
3,565,981	-		DDA3937_RS15575	0.89	-1.4
3,565,981	-		DDA3937_RS15575	0.89	-0.1
3,566,065	-				+0.1
3,566,089	+				-0.7
3,566,130	+				+2.3
3,566,159	-				+0.8
3,566,377	-		DDA3937_RS15580	0.15	-0.1
3,566,377	-		DDA3937_RS15580	0.15	-2.8
3,566,377	-		DDA3937_RS15580	0.15	-0.0
3,566,392	+		DDA3937_RS15580	0.16	+0.7
3,566,392	+		DDA3937_RS15580	0.16	-0.5
3,566,392	+		DDA3937_RS15580	0.16	+0.6
3,566,393	-		DDA3937_RS15580	0.16	-1.1
3,566,526	+		DDA3937_RS15580	0.28	-0.8
3,566,527	-		DDA3937_RS15580	0.28	+0.3
3,566,527	-		DDA3937_RS15580	0.28	-1.1
3,566,527	-		DDA3937_RS15580	0.28	+0.6
3,566,527	-		DDA3937_RS15580	0.28	-0.1
3,566,751	+		DDA3937_RS15580	0.48	-0.6
3,566,751	+		DDA3937_RS15580	0.48	+0.8
3,566,751	+		DDA3937_RS15580	0.48	+1.1
3,566,751	+		DDA3937_RS15580	0.48	-1.8
3,566,751	+		DDA3937_RS15580	0.48	-1.1
3,566,752	-		DDA3937_RS15580	0.48	-1.2
3,566,752	-		DDA3937_RS15580	0.48	-1.6
3,566,846	-		DDA3937_RS15580	0.57	-0.0
3,567,061	+		DDA3937_RS15580	0.76	+0.1
3,567,076	+		DDA3937_RS15580	0.77	-0.4
3,567,076	+		DDA3937_RS15580	0.77	-0.2
3,567,076	+		DDA3937_RS15580	0.77	+0.0
3,567,076	+		DDA3937_RS15580	0.77	-1.6
3,567,076	+		DDA3937_RS15580	0.77	-2.0
3,567,077	-		DDA3937_RS15580	0.77	-0.5
3,567,077	-		DDA3937_RS15580	0.77	-0.5
3,567,077	-		DDA3937_RS15580	0.77	-0.9
3,567,077	-		DDA3937_RS15580	0.77	-2.0
3,567,077	-		DDA3937_RS15580	0.77	-0.3
3,567,077	-				+1.4
3,567,077	-		DDA3937_RS15580	0.77	-0.4
3,567,084	+		DDA3937_RS15580	0.78	+1.0
3,567,084	+		DDA3937_RS15580	0.78	-0.8
3,567,085	-		DDA3937_RS15580	0.78	-0.6
3,567,085	-		DDA3937_RS15580	0.78	+0.3
3,567,180	+		DDA3937_RS15580	0.86	-1.8
3,567,181	-		DDA3937_RS15580	0.87	-0.6
3,567,338	-				+1.8
3,567,384	+				-0.5
3,567,384	+				+1.0
3,567,388	+				+1.5
3,567,397	+				-0.2
3,567,398	-				+2.0
3,567,404	-				-0.4
3,567,444	+				+0.7
3,567,445	-				-1.2
3,567,445	-				+1.1
3,567,445	-				-0.3
3,567,445	-				+0.2
3,567,450	+				+1.0
3,567,450	+				+0.7
3,567,451	-				+0.7
3,567,451	-				+0.4
3,567,526	-				-0.5
3,567,593	-				-0.9
3,567,593	-				-0.9
3,567,837	+		DDA3937_RS15585	0.29	-1.4
3,567,890	+		DDA3937_RS15585	0.34	-1.9
3,568,023	-		DDA3937_RS15585	0.46	-1.1
3,568,260	-		DDA3937_RS15585	0.69	-0.7
3,568,260	-		DDA3937_RS15585	0.69	+0.7
3,568,260	-		DDA3937_RS15585	0.69	-1.5
3,568,291	+		DDA3937_RS15585	0.72	-0.2
3,568,291	+		DDA3937_RS15585	0.72	-0.2
3,568,291	+		DDA3937_RS15585	0.72	-0.8
3,568,291	+		DDA3937_RS15585	0.72	-0.0
3,568,292	-		DDA3937_RS15585	0.72	-1.0
3,568,292	-		DDA3937_RS15585	0.72	+1.4