Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15315

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,515,370	+		DDA3937_RS15310	0.28	+0.1
3,515,370	+		DDA3937_RS15310	0.28	+0.7
3,515,371	-		DDA3937_RS15310	0.28	-0.6
3,515,382	+		DDA3937_RS15310	0.29	-0.7
3,515,382	+		DDA3937_RS15310	0.29	-0.4
3,515,382	+		DDA3937_RS15310	0.29	-1.2
3,515,382	+		DDA3937_RS15310	0.29	-0.1
3,515,383	-		DDA3937_RS15310	0.29	-0.2
3,515,383	-		DDA3937_RS15310	0.29	-0.3
3,515,383	-		DDA3937_RS15310	0.29	-0.1
3,515,383	-		DDA3937_RS15310	0.29	-1.5
3,515,579	+		DDA3937_RS15310	0.45	-0.2
3,515,597	+		DDA3937_RS15310	0.46	-1.1
3,515,729	+		DDA3937_RS15310	0.57	-0.1
3,515,730	-		DDA3937_RS15310	0.57	+1.2
3,515,730	-		DDA3937_RS15310	0.57	-1.6
3,515,733	+		DDA3937_RS15310	0.57	+2.5
3,515,733	+		DDA3937_RS15310	0.57	-1.2
3,515,733	+		DDA3937_RS15310	0.57	+0.9
3,515,733	+		DDA3937_RS15310	0.57	-1.4
3,515,733	+		DDA3937_RS15310	0.57	-1.1
3,515,733	+		DDA3937_RS15310	0.57	+1.0
3,515,733	+		DDA3937_RS15310	0.57	+0.2
3,515,733	+		DDA3937_RS15310	0.57	-0.4
3,515,733	+		DDA3937_RS15310	0.57	-0.5
3,515,733	+		DDA3937_RS15310	0.57	-0.2
3,515,733	+		DDA3937_RS15310	0.57	+0.1
3,515,733	+		DDA3937_RS15310	0.57	+0.6
3,515,734	-		DDA3937_RS15310	0.57	-0.5
3,515,734	-		DDA3937_RS15310	0.57	-0.0
3,515,734	-		DDA3937_RS15310	0.57	+0.4
3,515,734	-		DDA3937_RS15310	0.57	+0.2
3,515,734	-		DDA3937_RS15310	0.57	-0.5
3,515,734	-		DDA3937_RS15310	0.57	+0.4
3,515,734	-		DDA3937_RS15310	0.57	-1.9
3,515,734	-		DDA3937_RS15310	0.57	-0.6
3,515,734	-		DDA3937_RS15310	0.57	-0.8
3,515,734	-		DDA3937_RS15310	0.57	+0.9
3,515,734	-		DDA3937_RS15310	0.57	-1.6
3,515,734	-		DDA3937_RS15310	0.57	+2.0
3,515,734	-		DDA3937_RS15310	0.57	-0.3
3,515,736	+				+0.4
3,515,736	+		DDA3937_RS15310	0.57	-1.8
3,515,736	+		DDA3937_RS15310	0.57	+1.1
3,515,736	+		DDA3937_RS15310	0.57	-0.3
3,515,737	-		DDA3937_RS15310	0.58	-0.7
3,515,737	-		DDA3937_RS15310	0.58	-0.5
3,515,737	-		DDA3937_RS15310	0.58	+0.5
3,515,742	+		DDA3937_RS15310	0.58	-1.3
3,515,742	+		DDA3937_RS15310	0.58	+0.8
3,515,743	-		DDA3937_RS15310	0.58	+0.4
3,515,868	+		DDA3937_RS15310	0.68	-0.7
3,515,868	+		DDA3937_RS15310	0.68	+0.3
3,515,868	+		DDA3937_RS15310	0.68	+0.8
3,515,868	+		DDA3937_RS15310	0.68	-0.6
3,515,868	+		DDA3937_RS15310	0.68	+0.2
3,515,868	+		DDA3937_RS15310	0.68	-0.0
3,515,869	-		DDA3937_RS15310	0.68	-0.9
3,515,869	-		DDA3937_RS15310	0.68	-0.0
3,515,908	-		DDA3937_RS15310	0.71	+0.7
3,515,955	+		DDA3937_RS15310	0.75	+0.8
3,515,956	-		DDA3937_RS15310	0.75	-0.4
3,516,011	+		DDA3937_RS15310	0.79	-1.5
3,516,011	+		DDA3937_RS15310	0.79	-0.7
3,516,011	+		DDA3937_RS15310	0.79	-0.8
3,516,011	+		DDA3937_RS15310	0.79	-0.5
3,516,012	-		DDA3937_RS15310	0.80	-0.1
3,516,015	+		DDA3937_RS15310	0.80	-0.9
3,516,016	-		DDA3937_RS15310	0.80	-0.3
3,516,064	+		DDA3937_RS15310	0.84	+0.4
3,516,065	-		DDA3937_RS15310	0.84	+4.6
3,516,065	-		DDA3937_RS15310	0.84	+1.0
3,516,077	+		DDA3937_RS15310	0.85	-0.5
3,516,077	+		DDA3937_RS15310	0.85	-0.3
3,516,077	+		DDA3937_RS15310	0.85	+0.4
3,516,077	+		DDA3937_RS15310	0.85	-1.1
3,516,077	+				-0.2
3,516,078	-		DDA3937_RS15310	0.85	-1.9
3,516,078	-				+2.1
3,516,081	+		DDA3937_RS15310	0.85	-0.9
3,516,082	-		DDA3937_RS15310	0.85	-1.4
3,516,126	+		DDA3937_RS15310	0.89	-1.0
3,516,126	+		DDA3937_RS15310	0.89	-0.6
3,516,126	+		DDA3937_RS15310	0.89	+0.4
3,516,126	+		DDA3937_RS15310	0.89	+0.2
3,516,127	-		DDA3937_RS15310	0.89	-0.5
3,516,127	-		DDA3937_RS15310	0.89	-3.1
3,516,164	-				-0.2
3,516,201	-				+0.7
3,516,239	+				+1.0
3,516,240	-				+0.7
3,516,272	+				+0.4
3,516,273	-				+0.2
3,516,276	+				+0.6
3,516,298	+				-0.7
3,516,298	+				-1.1
3,516,313	+				-0.5
3,516,327	+				+0.0
3,516,328	-				-0.7
3,516,328	-				-0.2
3,516,328	-				-1.0
3,516,328	-				+0.1
3,516,329	+				-0.5
3,516,329	+				-2.5
3,516,329	+				+0.3
3,516,330	-				-0.2
3,516,330	-				+5.4
3,516,351	-				-1.1
3,516,466	-		DDA3937_RS15315	0.17	-0.6
3,516,466	-		DDA3937_RS15315	0.17	+2.4
3,516,466	-		DDA3937_RS15315	0.17	+0.6
3,516,554	-		DDA3937_RS15315	0.25	-1.5
3,516,554	-		DDA3937_RS15315	0.25	-0.3
3,516,554	-		DDA3937_RS15315	0.25	-0.4
3,516,554	-		DDA3937_RS15315	0.25	+1.4
3,516,564	+		DDA3937_RS15315	0.26	+1.9
3,516,723	+		DDA3937_RS15315	0.41	+0.7
3,516,723	+		DDA3937_RS15315	0.41	+1.6
3,516,724	-		DDA3937_RS15315	0.41	+0.3
3,516,757	+		DDA3937_RS15315	0.44	+0.9
3,516,757	+		DDA3937_RS15315	0.44	-0.2
3,516,841	-		DDA3937_RS15315	0.52	-0.2
3,516,933	+		DDA3937_RS15315	0.60	+0.1
3,516,933	+		DDA3937_RS15315	0.60	-0.4
3,516,934	-		DDA3937_RS15315	0.60	-1.2
3,516,934	-		DDA3937_RS15315	0.60	-1.1
3,516,947	+		DDA3937_RS15315	0.62	-0.5
3,516,948	-		DDA3937_RS15315	0.62	+0.6
3,516,969	+				+1.4
3,516,969	+		DDA3937_RS15315	0.64	+0.5
3,516,970	-		DDA3937_RS15315	0.64	+0.7
3,516,970	-		DDA3937_RS15315	0.64	+0.4
3,516,970	-		DDA3937_RS15315	0.64	-1.2
3,516,986	+		DDA3937_RS15315	0.65	+0.7
3,516,991	-		DDA3937_RS15315	0.66	-0.2
3,517,158	+		DDA3937_RS15315	0.81	+1.1
3,517,159	-		DDA3937_RS15315	0.81	+0.5
3,517,159	-		DDA3937_RS15315	0.81	-0.5
3,517,159	-		DDA3937_RS15315	0.81	+1.2
3,517,411	+				+0.7
3,517,491	+		DDA3937_RS15320	0.12	+0.1
3,517,492	-		DDA3937_RS15320	0.12	-0.2
3,517,492	-		DDA3937_RS15320	0.12	+1.4
3,517,492	-		DDA3937_RS15320	0.12	-1.9
3,517,492	-		DDA3937_RS15320	0.12	-0.4
3,517,492	-		DDA3937_RS15320	0.12	-0.2
3,517,508	+		DDA3937_RS15320	0.13	-1.6
3,517,508	+		DDA3937_RS15320	0.13	+0.1
3,517,574	+		DDA3937_RS15320	0.19	-1.2
3,517,574	+		DDA3937_RS15320	0.19	+0.7
3,517,574	+		DDA3937_RS15320	0.19	-0.9
3,517,838	+		DDA3937_RS15320	0.42	+0.2
3,517,838	+		DDA3937_RS15320	0.42	-0.2
3,517,839	-		DDA3937_RS15320	0.42	-0.4
3,517,839	-		DDA3937_RS15320	0.42	-0.8
3,517,840	+		DDA3937_RS15320	0.42	-1.4
3,517,840	+		DDA3937_RS15320	0.42	-1.3
3,517,841	-		DDA3937_RS15320	0.42	+0.8
3,517,841	-		DDA3937_RS15320	0.42	-0.5
3,517,917	+		DDA3937_RS15320	0.49	+0.7
3,518,039	+		DDA3937_RS15320	0.59	+0.3
3,518,131	-		DDA3937_RS15320	0.67	-1.8
3,518,250	+		DDA3937_RS15320	0.78	-0.8
3,518,250	+		DDA3937_RS15320	0.78	-0.3
3,518,250	+		DDA3937_RS15320	0.78	-0.2
3,518,250	+		DDA3937_RS15320	0.78	-0.8
3,518,250	+		DDA3937_RS15320	0.78	-0.4
3,518,250	+		DDA3937_RS15320	0.78	-0.0
3,518,251	-		DDA3937_RS15320	0.78	-0.9
3,518,251	-		DDA3937_RS15320	0.78	-0.3
3,518,317	+		DDA3937_RS15320	0.84	+0.9