Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15010

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,443,975	+		DDA3937_RS15000	0.87	+1.0
3,443,975	+		DDA3937_RS15000	0.87	+0.1
3,443,975	+		DDA3937_RS15000	0.87	+0.7
3,443,975	+		DDA3937_RS15000	0.87	+0.3
3,443,975	+		DDA3937_RS15000	0.87	+0.6
3,443,975	+		DDA3937_RS15000	0.87	-0.1
3,443,976	-		DDA3937_RS15000	0.88	+1.7
3,443,976	-		DDA3937_RS15000	0.88	-0.2
3,443,983	-		DDA3937_RS15000	0.88	-0.8
3,444,076	+				-0.7
3,444,076	+				-0.8
3,444,077	-				-1.0
3,444,077	-				-0.1
3,444,077	-				-0.4
3,444,077	-				-1.0
3,444,077	-				-0.9
3,444,092	-				+1.4
3,444,092	-				-0.9
3,444,177	+		DDA3937_RS15005	0.13	-1.5
3,444,178	-		DDA3937_RS15005	0.13	-3.4
3,444,254	+		DDA3937_RS15005	0.22	+0.2
3,444,254	+		DDA3937_RS15005	0.22	-0.4
3,444,254	+		DDA3937_RS15005	0.22	-1.3
3,444,254	+		DDA3937_RS15005	0.22	+0.3
3,444,254	+		DDA3937_RS15005	0.22	+0.0
3,444,254	+		DDA3937_RS15005	0.22	+0.1
3,444,254	+		DDA3937_RS15005	0.22	-1.0
3,444,255	-		DDA3937_RS15005	0.22	-0.6
3,444,255	-		DDA3937_RS15005	0.22	-0.1
3,444,255	-		DDA3937_RS15005	0.22	-0.5
3,444,255	-		DDA3937_RS15005	0.22	-0.6
3,444,255	-		DDA3937_RS15005	0.22	+0.6
3,444,255	-		DDA3937_RS15005	0.22	+2.9
3,444,355	+		DDA3937_RS15005	0.35	+2.4
3,444,355	+		DDA3937_RS15005	0.35	-1.7
3,444,355	+		DDA3937_RS15005	0.35	-0.8
3,444,356	-				+1.4
3,444,360	+		DDA3937_RS15005	0.35	+1.1
3,444,360	+		DDA3937_RS15005	0.35	+0.2
3,444,360	+		DDA3937_RS15005	0.35	+1.0
3,444,360	+		DDA3937_RS15005	0.35	-0.5
3,444,360	+		DDA3937_RS15005	0.35	+0.2
3,444,360	+		DDA3937_RS15005	0.35	+0.6
3,444,361	-		DDA3937_RS15005	0.35	-3.0
3,444,361	-		DDA3937_RS15005	0.35	-0.3
3,444,361	-		DDA3937_RS15005	0.35	-1.6
3,444,361	-		DDA3937_RS15005	0.35	-0.2
3,444,362	+		DDA3937_RS15005	0.35	-0.4
3,444,521	+		DDA3937_RS15005	0.55	+0.1
3,444,521	+		DDA3937_RS15005	0.55	-1.2
3,444,522	-		DDA3937_RS15005	0.55	+0.0
3,444,569	+		DDA3937_RS15005	0.60	-2.3
3,444,569	+		DDA3937_RS15005	0.60	-1.0
3,444,570	-		DDA3937_RS15005	0.61	-0.6
3,444,853	-				-0.3
3,444,853	-				+0.7
3,444,950	+				+0.4
3,444,950	+				-0.1
3,444,950	+				+0.1
3,444,950	+				-0.1
3,444,950	+				-1.6
3,444,951	-				+1.4
3,444,951	-				+0.1
3,444,951	-				-0.8
3,444,951	-				+0.9
3,444,951	-				-1.3
3,444,951	-				-1.2
3,444,962	+				+1.4
3,444,962	+				-1.1
3,444,963	-				-1.5
3,445,147	-		DDA3937_RS15010	0.21	-1.7
3,445,154	+		DDA3937_RS15010	0.22	-0.8
3,445,199	+		DDA3937_RS15010	0.27	-0.7
3,445,199	+		DDA3937_RS15010	0.27	-0.6
3,445,200	-		DDA3937_RS15010	0.27	-0.2
3,445,200	-		DDA3937_RS15010	0.27	+0.0
3,445,200	-		DDA3937_RS15010	0.27	+0.0
3,445,283	+		DDA3937_RS15010	0.36	-2.2
3,445,343	+		DDA3937_RS15010	0.42	-0.7
3,445,344	-		DDA3937_RS15010	0.42	-0.0
3,445,344	-		DDA3937_RS15010	0.42	-0.2
3,445,344	-		DDA3937_RS15010	0.42	-0.0
3,445,344	-		DDA3937_RS15010	0.42	-0.9
3,445,352	+		DDA3937_RS15010	0.43	+0.2
3,445,352	+		DDA3937_RS15010	0.43	-1.0
3,445,353	-		DDA3937_RS15010	0.43	-1.0
3,445,353	-		DDA3937_RS15010	0.43	-1.3
3,445,478	+		DDA3937_RS15010	0.56	+0.6
3,445,479	-		DDA3937_RS15010	0.56	-1.4
3,445,479	-		DDA3937_RS15010	0.56	-1.0
3,445,479	-		DDA3937_RS15010	0.56	-2.6
3,445,548	+		DDA3937_RS15010	0.63	-0.6
3,445,574	+		DDA3937_RS15010	0.66	+1.2
3,445,574	+		DDA3937_RS15010	0.66	+0.9
3,445,575	-		DDA3937_RS15010	0.66	+0.7
3,445,634	+		DDA3937_RS15010	0.72	+2.1
3,445,634	+		DDA3937_RS15010	0.72	-0.0
3,445,634	+		DDA3937_RS15010	0.72	-1.2
3,445,634	+		DDA3937_RS15010	0.72	+0.1
3,445,634	+				+0.8
3,445,634	+		DDA3937_RS15010	0.72	+0.5
3,445,634	+		DDA3937_RS15010	0.72	-0.1
3,445,635	-		DDA3937_RS15010	0.72	+0.2
3,445,635	-		DDA3937_RS15010	0.72	-0.6
3,445,635	-		DDA3937_RS15010	0.72	-0.4
3,445,896	+				+3.2
3,445,896	+				+0.1
3,445,897	-				-0.6
3,445,897	-				-0.5
3,445,897	-				+0.0
3,445,897	-				+0.9
3,445,897	-				-0.8
3,445,897	-				-0.0
3,445,909	-				+1.0
3,445,909	-				+0.4
3,445,909	-				-0.1
3,445,949	+				-0.3
3,445,950	-				+0.3
3,445,950	-				-0.8
3,445,951	+				+0.9
3,445,951	+				-2.3
3,445,951	+				-0.6
3,445,951	+				-2.0
3,445,952	-				+0.6
3,445,952	-				-0.4
3,445,952	-				-0.8
3,445,961	+				+0.5
3,445,963	+				+0.0
3,445,963	+				-1.2
3,445,964	-				-0.1
3,445,964	-				+0.5
3,445,964	-				-1.2
3,446,074	+				+1.4
3,446,074	+				-0.2
3,446,074	+				+0.0
3,446,074	+				-0.3
3,446,075	-				-0.0
3,446,075	-				+0.5
3,446,077	-				-0.6
3,446,144	+				-0.3
3,446,145	-				-0.2
3,446,145	-				+1.0
3,446,145	-				-0.9
3,446,448	+				-0.1
3,446,448	+				-0.1
3,446,453	+				-1.4
3,446,584	+				-0.1
3,446,584	+				-1.2
3,446,584	+				-0.4
3,446,586	+				-0.0
3,446,586	+				-0.1
3,446,586	+				-2.2
3,446,586	+				-0.2
3,446,587	-				+0.6
3,446,627	-				-0.8
3,446,635	+				+4.3
3,446,635	+				-1.4
3,446,636	-				+0.1
3,446,646	+				+1.0
3,446,646	+				+0.8
3,446,646	+				-1.5
3,446,646	+				-1.2
3,446,646	+				-0.1
3,446,646	+				-0.2
3,446,646	+				-0.2
3,446,646	+				-1.3
3,446,646	+				+0.0
3,446,646	+				-1.2
3,446,646	+				-0.8
3,446,646	+				+1.4
3,446,646	+				-1.4
3,446,646	+				+0.7
3,446,647	-				-1.2
3,446,647	-				-1.4
3,446,647	-				+2.7
3,446,647	-				+4.0
3,446,647	-				+1.0
3,446,647	-				-0.5
3,446,647	-				-0.3
3,446,647	-				-0.4
3,446,647	-				-0.2
3,446,647	-				-0.1
3,446,647	-				+0.8
3,446,647	-				-0.8
3,446,647	-				-0.8
3,446,647	-				-0.2
3,446,647	-				+0.6
3,446,648	+				+0.8
3,446,648	+				+0.5
3,446,648	+				+0.0
3,446,648	+				-0.2
3,446,648	+				+0.8
3,446,648	+				-0.5
3,446,648	+				+3.7
3,446,648	+				+2.6
3,446,648	+				+2.4
3,446,648	+				-0.6
3,446,648	+				-0.4
3,446,648	+				+0.0
3,446,648	+				-0.7
3,446,648	+				+0.7
3,446,649	-				-1.2
3,446,649	-				-0.6
3,446,649	-				+1.5
3,446,649	-				-0.6
3,446,649	-				+1.4
3,446,649	-				+0.8
3,446,649	-				-0.2
3,446,649	-				-2.3
3,446,650	+				-0.0
3,446,650	+				-0.4
3,446,650	+				-0.5
3,446,651	-				-0.4
3,446,651	-				+1.4
3,446,651	-				-1.6
3,446,684	+				-0.0
3,446,687	+				+0.8
3,446,687	+				+0.6
3,446,688	-				+0.4
3,446,688	-				-0.2
3,446,688	-				-0.5
3,446,839	-		DDA3937_RS15015	0.24	+0.9
3,446,839	-		DDA3937_RS15015	0.24	+0.4
3,446,861	+		DDA3937_RS15015	0.27	+0.1
3,446,892	+		DDA3937_RS15015	0.31	-0.6
3,446,892	+		DDA3937_RS15015	0.31	+0.1
3,446,893	-		DDA3937_RS15015	0.31	+0.3