Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14240

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,259,788	+		DDA3937_RS14230	0.35	+0.0
3,259,788	+		DDA3937_RS14230	0.35	-0.6
3,259,789	-		DDA3937_RS14230	0.35	+0.5
3,259,827	-		DDA3937_RS14230	0.43	-0.6
3,259,904	+		DDA3937_RS14230	0.58	+1.5
3,259,966	+				+0.3
3,259,967	-		DDA3937_RS14230	0.70	-0.3
3,259,967	-		DDA3937_RS14230	0.70	-1.0
3,260,131	+				+0.3
3,260,131	+				-1.7
3,260,132	-				+0.2
3,260,238	-		DDA3937_RS14235	0.14	-0.7
3,260,238	-		DDA3937_RS14235	0.14	-0.2
3,260,238	-		DDA3937_RS14235	0.14	-0.5
3,260,238	-		DDA3937_RS14235	0.14	+0.2
3,260,658	+				-0.1
3,260,658	+				-1.9
3,260,658	+				-0.1
3,260,658	+				+0.3
3,260,658	+				+0.2
3,260,658	+				-1.2
3,260,659	-				-1.1
3,260,659	-				-0.7
3,260,659	-				-2.1
3,260,659	-				+0.5
3,260,659	-				-0.5
3,260,659	-				-0.7
3,260,659	-				-0.2
3,260,659	-				-0.2
3,260,659	-				+1.6
3,260,714	+				-1.7
3,260,714	+				-0.5
3,260,714	+				-0.3
3,260,715	-				-0.5
3,260,715	-				-0.1
3,260,715	-				-0.6
3,260,715	-				-2.4
3,260,734	+				-1.5
3,260,734	+				+3.3
3,260,734	+				-0.7
3,260,734	+				-2.0
3,260,734	+				-0.7
3,260,734	+				-0.1
3,260,734	+				+1.3
3,260,734	+				-1.1
3,260,734	+				+0.3
3,260,734	+				+0.5
3,260,735	-				+0.1
3,260,735	-				-2.4
3,260,735	-				-1.1
3,260,735	-				+0.8
3,260,886	+		DDA3937_RS14240	0.13	-0.3
3,260,886	+		DDA3937_RS14240	0.13	-0.8
3,260,886	+		DDA3937_RS14240	0.13	+1.7
3,260,886	+		DDA3937_RS14240	0.13	-1.2
3,260,887	-		DDA3937_RS14240	0.13	-2.8
3,260,887	-		DDA3937_RS14240	0.13	-2.6
3,260,890	+				+2.9
3,260,890	+		DDA3937_RS14240	0.13	-1.6
3,260,890	+		DDA3937_RS14240	0.13	+0.0
3,260,890	+		DDA3937_RS14240	0.13	-0.6
3,260,891	-		DDA3937_RS14240	0.13	-1.2
3,260,891	-		DDA3937_RS14240	0.13	-0.1
3,260,891	-		DDA3937_RS14240	0.13	-1.5
3,260,891	-		DDA3937_RS14240	0.13	-1.3
3,260,893	+		DDA3937_RS14240	0.13	+0.7
3,260,894	-		DDA3937_RS14240	0.13	-0.8
3,260,894	-		DDA3937_RS14240	0.13	+0.1
3,260,894	-		DDA3937_RS14240	0.13	-0.2
3,261,020	-		DDA3937_RS14240	0.21	+0.4
3,261,071	+		DDA3937_RS14240	0.24	-0.3
3,261,157	+		DDA3937_RS14240	0.29	-0.6
3,261,158	-		DDA3937_RS14240	0.29	+0.0
3,261,158	-		DDA3937_RS14240	0.29	-1.7
3,261,158	-		DDA3937_RS14240	0.29	+2.9
3,261,158	-		DDA3937_RS14240	0.29	+0.4
3,261,159	+		DDA3937_RS14240	0.29	-1.5
3,261,159	+		DDA3937_RS14240	0.29	-0.2
3,261,159	+		DDA3937_RS14240	0.29	-0.1
3,261,159	+		DDA3937_RS14240	0.29	-1.7
3,261,160	-		DDA3937_RS14240	0.29	+0.3
3,261,199	+		DDA3937_RS14240	0.31	-2.3
3,261,199	+		DDA3937_RS14240	0.31	+0.4
3,261,288	+		DDA3937_RS14240	0.36	-1.4
3,261,288	+		DDA3937_RS14240	0.36	-0.9
3,261,288	+		DDA3937_RS14240	0.36	+0.5
3,261,289	-		DDA3937_RS14240	0.36	-0.8
3,261,315	+		DDA3937_RS14240	0.38	+0.4
3,261,316	-		DDA3937_RS14240	0.38	-1.5
3,261,316	-		DDA3937_RS14240	0.38	-2.3
3,261,466	-		DDA3937_RS14240	0.47	-0.7
3,261,466	-		DDA3937_RS14240	0.47	-0.7
3,261,528	+		DDA3937_RS14240	0.50	+0.8
3,261,600	+		DDA3937_RS14240	0.55	-0.2
3,261,600	+				-0.7
3,261,601	-		DDA3937_RS14240	0.55	-0.2
3,261,601	-		DDA3937_RS14240	0.55	+1.7
3,261,601	-		DDA3937_RS14240	0.55	-0.9
3,261,648	+		DDA3937_RS14240	0.58	+1.0
3,261,649	-		DDA3937_RS14240	0.58	+2.9
3,261,649	-		DDA3937_RS14240	0.58	-0.8
3,261,649	-		DDA3937_RS14240	0.58	+1.1
3,261,743	-		DDA3937_RS14240	0.63	-0.5
3,261,801	+		DDA3937_RS14240	0.66	-1.2
3,261,921	-		DDA3937_RS14240	0.74	-1.4
3,261,943	+		DDA3937_RS14240	0.75	-0.0
3,262,048	-		DDA3937_RS14240	0.81	+0.9
3,262,048	-		DDA3937_RS14240	0.81	-0.2
3,262,048	-		DDA3937_RS14240	0.81	-2.3
3,262,060	+				-1.1
3,262,060	+		DDA3937_RS14240	0.82	-3.5
3,262,061	-		DDA3937_RS14240	0.82	+0.0
3,262,061	-		DDA3937_RS14240	0.82	-1.7
3,262,104	+		DDA3937_RS14240	0.84	+0.2
3,262,105	-		DDA3937_RS14240	0.84	-2.0
3,262,105	-		DDA3937_RS14240	0.84	+0.6
3,262,105	-		DDA3937_RS14240	0.84	-0.9
3,262,195	+		DDA3937_RS14240	0.90	-0.7
3,262,195	+		DDA3937_RS14240	0.90	+0.0
3,262,195	+		DDA3937_RS14240	0.90	-0.4
3,262,196	-		DDA3937_RS14240	0.90	-0.7
3,262,377	+				-0.2
3,262,378	-				-0.1
3,262,397	+				-2.7
3,262,397	+				-1.1
3,262,397	+				-0.7
3,262,397	+				-1.1
3,262,397	+				-0.6
3,262,397	+				+0.3
3,262,397	+				+0.9
3,262,398	-				+0.1
3,262,398	-				+0.2
3,262,398	-				-0.5
3,262,398	-				+2.0
3,262,398	-				-0.6
3,262,398	-				-0.5
3,262,440	+				-0.3
3,262,441	-				+0.4
3,262,450	+				+0.5
3,262,450	+				-0.7
3,262,451	-				-1.0
3,262,451	-				-0.0
3,262,513	+		DDA3937_RS14245	0.14	+1.9
3,262,513	+		DDA3937_RS14245	0.14	-0.9
3,262,513	+		DDA3937_RS14245	0.14	-2.4
3,262,513	+		DDA3937_RS14245	0.14	-0.4
3,262,514	-		DDA3937_RS14245	0.14	-0.7
3,262,514	-		DDA3937_RS14245	0.14	-0.5
3,262,514	-		DDA3937_RS14245	0.14	-0.5
3,262,514	-		DDA3937_RS14245	0.14	-2.2
3,262,552	+		DDA3937_RS14245	0.17	-0.0
3,262,553	-		DDA3937_RS14245	0.17	+0.3
3,262,553	-		DDA3937_RS14245	0.17	+0.6
3,262,553	-		DDA3937_RS14245	0.17	+1.4
3,262,758	+		DDA3937_RS14245	0.34	-0.5
3,262,759	-		DDA3937_RS14245	0.34	+0.2
3,262,930	+		DDA3937_RS14245	0.48	-0.0
3,262,930	+		DDA3937_RS14245	0.48	+0.3
3,262,931	-		DDA3937_RS14245	0.48	+0.1
3,262,931	-		DDA3937_RS14245	0.48	-0.4
3,263,125	+		DDA3937_RS14245	0.65	-1.4
3,263,125	+		DDA3937_RS14245	0.65	+0.3
3,263,126	-		DDA3937_RS14245	0.65	-1.3
3,263,126	-		DDA3937_RS14245	0.65	+0.5
3,263,135	+		DDA3937_RS14245	0.65	+1.3
3,263,135	+		DDA3937_RS14245	0.65	+0.0
3,263,136	-		DDA3937_RS14245	0.66	-0.6
3,263,136	-		DDA3937_RS14245	0.66	-1.1
3,263,176	+		DDA3937_RS14245	0.69	-0.1
3,263,177	-		DDA3937_RS14245	0.69	-0.1
3,263,189	-		DDA3937_RS14245	0.70	-0.7
3,263,194	+		DDA3937_RS14245	0.70	-1.1
3,263,194	+		DDA3937_RS14245	0.70	-0.8
3,263,194	+		DDA3937_RS14245	0.70	-1.7
3,263,195	-		DDA3937_RS14245	0.70	+0.4
3,263,195	-		DDA3937_RS14245	0.70	-0.7
3,263,317	+		DDA3937_RS14245	0.81	+2.0
3,263,317	+		DDA3937_RS14245	0.81	-1.0
3,263,317	+		DDA3937_RS14245	0.81	+0.3
3,263,317	+		DDA3937_RS14245	0.81	-0.7
3,263,317	+		DDA3937_RS14245	0.81	+1.0
3,263,317	+		DDA3937_RS14245	0.81	-0.7
3,263,317	+		DDA3937_RS14245	0.81	-1.2
3,263,318	-		DDA3937_RS14245	0.81	+0.2
3,263,318	-		DDA3937_RS14245	0.81	-0.8
3,263,318	-		DDA3937_RS14245	0.81	+1.8
3,263,318	-		DDA3937_RS14245	0.81	+0.3
3,263,318	-		DDA3937_RS14245	0.81	+0.3