Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14115

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,228,316	+				+1.2
3,228,316	+		DDA3937_RS14110	0.68	-1.0
3,228,392	+		DDA3937_RS14110	0.74	-1.3
3,228,405	+		DDA3937_RS14110	0.75	+0.7
3,228,405	+		DDA3937_RS14110	0.75	-0.7
3,228,406	-		DDA3937_RS14110	0.75	-0.6
3,228,548	+		DDA3937_RS14110	0.86	-0.3
3,228,548	+		DDA3937_RS14110	0.86	-0.3
3,228,548	+		DDA3937_RS14110	0.86	+0.1
3,228,549	-		DDA3937_RS14110	0.86	+0.2
3,228,599	+				-0.0
3,228,599	+				-1.3
3,228,600	-				-0.6
3,228,604	+				-0.1
3,228,604	+				+0.0
3,228,604	+				+2.3
3,228,604	+				-0.3
3,228,604	+				-1.0
3,228,604	+				-1.5
3,228,604	+				+1.2
3,228,604	+				-0.3
3,228,604	+				+2.8
3,228,604	+				-0.1
3,228,604	+				-0.2
3,228,604	+				-0.3
3,228,605	-				+1.2
3,228,605	-				+2.9
3,228,605	-				-1.0
3,228,605	-				+4.4
3,228,605	-				-1.2
3,228,605	-				-1.5
3,228,605	-				-0.2
3,228,605	-				-1.3
3,228,605	-				+0.6
3,228,605	-				-0.5
3,228,605	-				-0.4
3,228,605	-				-0.2
3,228,605	-				-0.8
3,228,605	-				-0.6
3,228,605	-				-1.0
3,228,605	-				-0.3
3,228,605	-				+1.1
3,228,605	-				-0.1
3,228,605	-				+0.5
3,228,605	-				+0.3
3,228,605	-				+2.3
3,228,605	-				-0.3
3,228,605	-				+0.2
3,228,605	-				-0.6
3,228,608	+				-1.1
3,228,608	+				-0.2
3,228,609	-				-0.5
3,228,771	+				+0.8
3,228,771	+				-0.5
3,228,772	-				-0.3
3,228,777	+				-0.4
3,228,803	+				+0.1
3,228,803	+				+0.7
3,228,804	-				-0.8
3,228,804	-				-1.6
3,228,820	-				-0.4
3,228,820	-				+1.0
3,228,821	+				-0.6
3,228,821	+				-0.0
3,228,821	+				+0.0
3,228,821	+				-0.4
3,228,821	+				+0.5
3,228,822	-				+0.1
3,228,822	-				+3.2
3,228,822	-				+0.0
3,228,822	-				-1.4
3,228,822	-				-1.3
3,228,836	+				+1.2
3,228,837	-				-0.3
3,228,852	+				-0.8
3,228,891	-				-0.0
3,228,891	-				+0.2
3,228,925	+				+0.4
3,228,928	+				+0.0
3,228,928	+				-0.6
3,228,931	+				+0.8
3,228,931	+				-0.0
3,228,945	+				-0.1
3,228,945	+				-0.2
3,228,945	+				-0.1
3,228,965	-				+2.8
3,229,010	+				-0.7
3,229,010	+				+1.6
3,229,010	+				+0.7
3,229,014	+				-1.3
3,229,015	-				-0.6
3,229,015	-				-0.8
3,229,030	+				+0.4
3,229,030	+				-1.3
3,229,043	+				-1.5
3,229,101	+				-0.6
3,229,101	+				-1.3
3,229,102	-				+1.0
3,229,102	-				+3.1
3,229,102	-				-0.0
3,229,104	+				-0.4
3,229,105	-				-0.0
3,229,105	-				-0.4
3,229,117	+				+0.8
3,229,117	+				+0.5
3,229,117	+				+0.1
3,229,118	-				-0.9
3,229,124	-				+1.2
3,229,124	-				-1.8
3,229,128	+				-2.0
3,229,128	+				-0.3
3,229,159	+				-0.3
3,229,159	+				-1.2
3,229,159	+				-1.4
3,229,159	+				+3.0
3,229,160	-				-0.2
3,229,160	-				-1.6
3,229,160	-				+0.6
3,229,160	-				-0.3
3,229,258	+				+0.2
3,229,258	+				-0.9
3,229,284	-				-1.3
3,229,285	+				+0.4
3,229,285	+				+0.4
3,229,285	+				-1.5
3,229,286	-				+1.0
3,229,286	-				+0.2
3,229,349	-				-0.1
3,229,381	+				+0.2
3,229,381	+				-1.1
3,229,381	+				+0.6
3,229,381	+				-1.5
3,229,381	+				+0.5
3,229,382	-				+0.7
3,229,382	-				+0.2
3,229,382	-				-0.2
3,229,382	-				+0.5
3,229,424	-		DDA3937_RS14115	0.12	+2.3
3,229,424	-		DDA3937_RS14115	0.12	-1.9
3,229,540	+		DDA3937_RS14115	0.20	-0.6
3,229,541	-		DDA3937_RS14115	0.20	-0.3
3,229,552	+		DDA3937_RS14115	0.21	+0.4
3,229,553	-		DDA3937_RS14115	0.21	-0.1
3,229,553	-		DDA3937_RS14115	0.21	-1.3
3,229,553	-		DDA3937_RS14115	0.21	-1.6
3,229,576	+		DDA3937_RS14115	0.23	+0.5
3,229,576	+		DDA3937_RS14115	0.23	-0.6
3,229,674	+		DDA3937_RS14115	0.30	+0.0
3,229,675	-				-1.1
3,229,824	-		DDA3937_RS14115	0.41	-0.3
3,230,135	+		DDA3937_RS14115	0.63	+0.7
3,230,135	+		DDA3937_RS14115	0.63	+0.0
3,230,135	+		DDA3937_RS14115	0.63	+0.2
3,230,135	+		DDA3937_RS14115	0.63	-0.2
3,230,136	-		DDA3937_RS14115	0.63	+0.2
3,230,136	-				+0.2
3,230,136	-		DDA3937_RS14115	0.63	+2.3
3,230,136	-		DDA3937_RS14115	0.63	+0.0
3,230,136	-		DDA3937_RS14115	0.63	-0.5
3,230,136	-		DDA3937_RS14115	0.63	-0.3
3,230,188	+		DDA3937_RS14115	0.67	-0.2
3,230,188	+		DDA3937_RS14115	0.67	-1.3
3,230,188	+		DDA3937_RS14115	0.67	-0.8
3,230,189	-		DDA3937_RS14115	0.67	+0.2
3,230,189	-		DDA3937_RS14115	0.67	-2.5
3,230,243	+		DDA3937_RS14115	0.71	-1.0
3,230,244	-		DDA3937_RS14115	0.71	-2.5
3,230,536	+				-2.1
3,230,587	+				+0.2
3,230,613	+				-0.7
3,230,634	+				-0.8
3,230,634	+				-0.2
3,230,634	+				-0.5
3,230,634	+				-1.8
3,230,635	-				-0.8
3,230,635	-				+0.6
3,230,672	-				-1.6
3,230,672	-				-0.9
3,230,672	-				+0.6
3,230,672	-				-0.5
3,230,677	+				+0.8
3,230,678	-				+0.7
3,230,678	-				+0.6
3,230,818	+				+2.6
3,230,819	-				-0.5
3,230,937	+				-2.1
3,230,937	+				+0.9
3,230,937	+				-0.6
3,230,937	+				-0.2
3,230,937	+				-0.8
3,230,938	-				+0.2
3,230,938	-				-1.0
3,230,938	-				-0.5
3,230,938	-				+0.3
3,230,938	-				+0.6
3,231,040	-		DDA3937_RS14120	0.12	+0.8
3,231,062	+		DDA3937_RS14120	0.13	-0.7
3,231,062	+		DDA3937_RS14120	0.13	+1.9
3,231,062	+		DDA3937_RS14120	0.13	-0.5
3,231,062	+		DDA3937_RS14120	0.13	-0.8
3,231,063	-		DDA3937_RS14120	0.13	-1.6
3,231,063	-		DDA3937_RS14120	0.13	+2.5
3,231,063	-		DDA3937_RS14120	0.13	+0.0
3,231,086	+		DDA3937_RS14120	0.14	+0.2
3,231,087	-		DDA3937_RS14120	0.14	+0.8
3,231,141	+		DDA3937_RS14120	0.15	+1.6
3,231,141	+		DDA3937_RS14120	0.15	-1.3
3,231,141	+		DDA3937_RS14120	0.15	-0.9
3,231,141	+		DDA3937_RS14120	0.15	-2.0
3,231,141	+		DDA3937_RS14120	0.15	-0.3
3,231,142	-		DDA3937_RS14120	0.15	+0.4
3,231,142	-				+0.0
3,231,142	-		DDA3937_RS14120	0.15	+0.3
3,231,187	-		DDA3937_RS14120	0.17	-0.6
3,231,187	-		DDA3937_RS14120	0.17	-0.2
3,231,360	+		DDA3937_RS14120	0.22	-0.2
3,231,385	-		DDA3937_RS14120	0.23	-1.2
3,231,512	-		DDA3937_RS14120	0.27	+0.9
3,231,513	+		DDA3937_RS14120	0.27	+0.3
3,231,513	+		DDA3937_RS14120	0.27	-1.0
3,231,513	+		DDA3937_RS14120	0.27	-1.7
3,231,513	+		DDA3937_RS14120	0.27	+1.6
3,231,514	-		DDA3937_RS14120	0.27	-0.4
3,231,514	-		DDA3937_RS14120	0.27	+0.2
3,231,514	-		DDA3937_RS14120	0.27	-0.1
3,231,555	+		DDA3937_RS14120	0.28	-2.1
3,231,555	+		DDA3937_RS14120	0.28	+1.1
3,231,556	-		DDA3937_RS14120	0.28	-0.3
3,231,556	-		DDA3937_RS14120	0.28	-1.7
3,231,556	-		DDA3937_RS14120	0.28	-0.7
3,231,556	-		DDA3937_RS14120	0.28	-2.4
3,231,556	-		DDA3937_RS14120	0.28	-1.7