Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14085

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,216,077	+		DDA3937_RS14075	0.86	-0.4
3,216,078	-		DDA3937_RS14075	0.86	-1.2
3,216,078	-		DDA3937_RS14075	0.86	+0.3
3,216,078	-		DDA3937_RS14075	0.86	-0.8
3,216,152	-				+0.2
3,216,157	-				-0.9
3,216,470	+		DDA3937_RS14080	0.33	-0.6
3,216,470	+		DDA3937_RS14080	0.33	-0.4
3,216,470	+		DDA3937_RS14080	0.33	+0.7
3,216,471	-		DDA3937_RS14080	0.33	-1.2
3,216,471	-		DDA3937_RS14080	0.33	+0.0
3,216,471	-		DDA3937_RS14080	0.33	-0.5
3,216,471	-		DDA3937_RS14080	0.33	-0.2
3,216,471	-		DDA3937_RS14080	0.33	+0.2
3,216,471	-		DDA3937_RS14080	0.33	-0.6
3,216,471	-		DDA3937_RS14080	0.33	+0.2
3,216,717	+		DDA3937_RS14080	0.62	+5.5
3,216,717	+		DDA3937_RS14080	0.62	+0.2
3,216,918	+		DDA3937_RS14080	0.87	-0.2
3,216,919	-		DDA3937_RS14080	0.87	-2.4
3,217,011	+				-1.2
3,217,011	+				-2.1
3,217,011	+				+1.2
3,217,011	+				+1.3
3,217,011	+				-0.4
3,217,011	+				-0.1
3,217,011	+				-1.2
3,217,011	+				+0.3
3,217,012	-				-0.0
3,217,020	+				+0.9
3,217,020	+				+2.6
3,217,020	+				-0.1
3,217,021	-				+0.0
3,217,035	+				+1.2
3,217,073	-				-2.0
3,217,073	-				+0.4
3,217,091	+				-0.1
3,217,091	+				+1.3
3,217,091	+				-1.1
3,217,091	+				-1.1
3,217,092	-				-0.6
3,217,092	-				-1.1
3,217,092	-				+0.7
3,217,092	-				-0.6
3,217,150	+				-1.3
3,217,151	-				-0.4
3,217,151	-				-0.5
3,217,151	-				-2.1
3,217,151	-				-1.1
3,217,151	-				-0.6
3,217,151	-				-0.8
3,217,151	-				-1.2
3,217,376	+		DDA3937_RS14085	0.12	-1.4
3,217,376	+		DDA3937_RS14085	0.12	+0.1
3,217,376	+		DDA3937_RS14085	0.12	-1.5
3,217,376	+		DDA3937_RS14085	0.12	+0.8
3,217,377	-		DDA3937_RS14085	0.12	-0.1
3,217,377	-		DDA3937_RS14085	0.12	-1.5
3,217,377	-		DDA3937_RS14085	0.12	-0.3
3,217,377	-		DDA3937_RS14085	0.12	-1.2
3,217,452	-		DDA3937_RS14085	0.15	-1.8
3,217,478	+		DDA3937_RS14085	0.16	-0.5
3,217,683	-		DDA3937_RS14085	0.24	-0.3
3,217,764	+		DDA3937_RS14085	0.27	-1.4
3,217,764	+		DDA3937_RS14085	0.27	-0.5
3,217,764	+		DDA3937_RS14085	0.27	-0.1
3,217,764	+		DDA3937_RS14085	0.27	-1.5
3,217,764	+		DDA3937_RS14085	0.27	-2.6
3,217,765	-		DDA3937_RS14085	0.27	-1.6
3,217,765	-		DDA3937_RS14085	0.27	+4.0
3,217,893	-				+1.7
3,218,081	+		DDA3937_RS14085	0.39	-0.1
3,218,082	-		DDA3937_RS14085	0.39	-1.7
3,218,082	-		DDA3937_RS14085	0.39	-0.6
3,218,160	+		DDA3937_RS14085	0.42	-0.5
3,218,364	+		DDA3937_RS14085	0.49	-0.1
3,218,365	-		DDA3937_RS14085	0.49	+0.2
3,218,542	-		DDA3937_RS14085	0.56	-0.9
3,218,680	+		DDA3937_RS14085	0.61	+0.2
3,218,680	+		DDA3937_RS14085	0.61	-1.6
3,218,680	+		DDA3937_RS14085	0.61	+0.1
3,218,680	+		DDA3937_RS14085	0.61	-1.5
3,218,680	+		DDA3937_RS14085	0.61	+1.1
3,218,820	+		DDA3937_RS14085	0.66	+1.2
3,218,864	+		DDA3937_RS14085	0.68	-0.1
3,218,875	+		DDA3937_RS14085	0.68	-0.6
3,219,121	-		DDA3937_RS14085	0.78	-0.1
3,219,188	+		DDA3937_RS14085	0.80	+0.2
3,219,188	+		DDA3937_RS14085	0.80	+0.0
3,219,189	-		DDA3937_RS14085	0.80	+1.0
3,219,260	+		DDA3937_RS14085	0.83	+0.2
3,219,261	-		DDA3937_RS14085	0.83	-0.2
3,219,261	-		DDA3937_RS14085	0.83	+1.8
3,219,265	-		DDA3937_RS14085	0.83	+0.5
3,219,265	-		DDA3937_RS14085	0.83	+0.2
3,219,321	+				+0.2
3,219,321	+		DDA3937_RS14085	0.85	-0.8
3,219,321	+		DDA3937_RS14085	0.85	-0.6
3,219,321	+		DDA3937_RS14085	0.85	-0.2
3,219,322	-				+0.2
3,219,322	-		DDA3937_RS14085	0.85	-1.1
3,219,389	+		DDA3937_RS14085	0.88	+2.0
3,219,389	+		DDA3937_RS14085	0.88	+0.2
3,219,389	+		DDA3937_RS14085	0.88	+0.0
3,219,389	+		DDA3937_RS14085	0.88	-0.6
3,219,390	-		DDA3937_RS14085	0.88	-0.2
3,219,390	-		DDA3937_RS14085	0.88	+2.2
3,219,390	-		DDA3937_RS14085	0.88	-1.8
3,219,390	-		DDA3937_RS14085	0.88	-1.0
3,219,390	-		DDA3937_RS14085	0.88	+0.0
3,219,390	-		DDA3937_RS14085	0.88	-1.1
3,219,392	+		DDA3937_RS14085	0.88	+1.2
3,219,392	+		DDA3937_RS14085	0.88	-1.4
3,219,392	+		DDA3937_RS14085	0.88	+1.9
3,219,392	+		DDA3937_RS14085	0.88	-1.1
3,219,392	+		DDA3937_RS14085	0.88	-2.2
3,219,393	-		DDA3937_RS14085	0.88	+1.1
3,219,393	-		DDA3937_RS14085	0.88	+0.9
3,219,393	-		DDA3937_RS14085	0.88	-0.6
3,219,393	-		DDA3937_RS14085	0.88	-2.7
3,219,393	-		DDA3937_RS14085	0.88	-0.6
3,219,393	-		DDA3937_RS14085	0.88	-0.5
3,219,393	-		DDA3937_RS14085	0.88	-0.1
3,219,422	+		DDA3937_RS14085	0.89	-1.0
3,219,456	+				-0.4
3,219,456	+				+1.2
3,219,547	+				+0.7
3,219,547	+				+0.2
3,219,547	+				+1.7
3,219,548	-				+1.2
3,219,548	-				-1.2
3,219,767	+				-2.1
3,219,768	-				+0.3
3,219,768	-				-0.9
3,219,768	-				-0.7
3,219,768	-				-0.8
3,219,768	-				-1.9
3,219,768	-				-0.3
3,219,768	-				+2.1
3,219,768	-				+0.5
3,219,777	+				+0.2
3,219,777	+				-0.6
3,219,778	-				-0.3
3,219,961	-				-0.3
3,220,264	+		DDA3937_RS14090	0.13	-0.1
3,220,264	+		DDA3937_RS14090	0.13	-0.3
3,220,264	+		DDA3937_RS14090	0.13	+0.0
3,220,264	+		DDA3937_RS14090	0.13	-0.6
3,220,265	-		DDA3937_RS14090	0.13	-0.6
3,220,345	+		DDA3937_RS14090	0.15	-0.9
3,220,346	-		DDA3937_RS14090	0.15	-1.8
3,220,346	-		DDA3937_RS14090	0.15	-0.6
3,220,414	+		DDA3937_RS14090	0.17	-1.1
3,220,414	+		DDA3937_RS14090	0.17	-1.1
3,220,414	+		DDA3937_RS14090	0.17	+0.9
3,220,414	+		DDA3937_RS14090	0.17	-0.1
3,220,414	+		DDA3937_RS14090	0.17	-1.3
3,220,414	+		DDA3937_RS14090	0.17	-0.6
3,220,414	+		DDA3937_RS14090	0.17	+1.7
3,220,414	+		DDA3937_RS14090	0.17	-1.1
3,220,414	+		DDA3937_RS14090	0.17	-0.6
3,220,414	+		DDA3937_RS14090	0.17	+0.3
3,220,414	+		DDA3937_RS14090	0.17	-0.2
3,220,415	-		DDA3937_RS14090	0.17	-0.3
3,220,415	-		DDA3937_RS14090	0.17	-0.3
3,220,415	-		DDA3937_RS14090	0.17	-1.6
3,220,415	-		DDA3937_RS14090	0.17	+3.1
3,220,415	-		DDA3937_RS14090	0.17	-0.2
3,220,415	-		DDA3937_RS14090	0.17	-0.4
3,220,415	-		DDA3937_RS14090	0.17	+0.8
3,220,415	-		DDA3937_RS14090	0.17	+1.7
3,220,519	+		DDA3937_RS14090	0.19	-0.3
3,220,519	+		DDA3937_RS14090	0.19	+0.7
3,220,519	+		DDA3937_RS14090	0.19	-0.3
3,220,519	+		DDA3937_RS14090	0.19	+0.2
3,220,519	+		DDA3937_RS14090	0.19	+0.8
3,220,519	+		DDA3937_RS14090	0.19	-0.3
3,220,519	+		DDA3937_RS14090	0.19	+0.3
3,220,519	+		DDA3937_RS14090	0.19	+0.1
3,220,520	-		DDA3937_RS14090	0.19	-0.1
3,220,520	-		DDA3937_RS14090	0.19	-0.1
3,220,520	-		DDA3937_RS14090	0.19	+0.2
3,220,590	-		DDA3937_RS14090	0.21	+0.4
3,220,640	-		DDA3937_RS14090	0.22	-0.3