Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13585

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,093,477	+		DDA3937_RS13575	0.69	+0.9
3,093,477	+		DDA3937_RS13575	0.69	-0.4
3,093,478	-		DDA3937_RS13575	0.69	+0.6
3,093,522	+		DDA3937_RS13575	0.72	+0.6
3,093,523	-		DDA3937_RS13575	0.72	-0.6
3,093,630	+		DDA3937_RS13575	0.78	-0.7
3,093,630	+		DDA3937_RS13575	0.78	+0.5
3,093,691	+		DDA3937_RS13575	0.82	-0.2
3,093,691	+		DDA3937_RS13575	0.82	-0.9
3,093,691	+		DDA3937_RS13575	0.82	+1.1
3,093,691	+		DDA3937_RS13575	0.82	+0.5
3,093,691	+		DDA3937_RS13575	0.82	-0.4
3,093,692	-		DDA3937_RS13575	0.82	+1.4
3,093,692	-		DDA3937_RS13575	0.82	-1.8
3,093,692	-		DDA3937_RS13575	0.82	+0.4
3,093,737	-		DDA3937_RS13575	0.84	-0.7
3,093,899	+				+0.6
3,093,899	+				+2.9
3,093,900	-				-3.3
3,093,937	+				+1.6
3,094,009	+				-1.2
3,094,009	+				+1.4
3,094,009	+				+1.9
3,094,010	-				+0.1
3,094,010	-				-0.9
3,094,010	-				+3.5
3,094,010	-				-2.7
3,094,010	-				-0.2
3,094,012	+				-0.4
3,094,012	+				+1.6
3,094,026	+				+0.0
3,094,026	+				-0.0
3,094,027	-				-0.0
3,094,037	-				-0.2
3,094,054	+				+0.3
3,094,054	+				-2.2
3,094,054	+				-1.4
3,094,055	-				+0.3
3,094,067	+				+0.7
3,094,067	+				+0.7
3,094,068	-				+0.3
3,094,068	-				-0.3
3,094,068	-				-1.2
3,094,068	-				+0.3
3,094,116	+		DDA3937_RS13580	0.25	-0.4
3,094,116	+		DDA3937_RS13580	0.25	-0.3
3,094,117	-		DDA3937_RS13580	0.25	-0.7
3,094,117	-		DDA3937_RS13580	0.25	+0.4
3,094,117	-		DDA3937_RS13580	0.25	-0.9
3,094,169	+		DDA3937_RS13580	0.51	-0.7
3,094,169	+		DDA3937_RS13580	0.51	+0.4
3,094,170	-		DDA3937_RS13580	0.52	+0.3
3,094,170	-		DDA3937_RS13580	0.52	-0.4
3,094,258	+				+0.6
3,094,258	+				+0.5
3,094,259	-				-1.7
3,094,259	-				+1.6
3,094,259	-				-0.5
3,094,323	+				-1.0
3,094,323	+				-1.4
3,094,323	+				-1.1
3,094,324	-				-1.9
3,094,324	-				-1.2
3,094,324	-				-0.7
3,094,324	-				-2.3
3,094,360	+				+1.5
3,094,360	+				-0.2
3,094,362	+				+0.7
3,094,363	-				-0.7
3,094,363	-				-0.8
3,094,363	-				+0.6
3,094,363	-				-0.7
3,094,401	+		DDA3937_RS13585	0.19	+0.5
3,094,410	+		DDA3937_RS13585	0.21	-1.4
3,094,410	+		DDA3937_RS13585	0.21	-2.7
3,094,411	-		DDA3937_RS13585	0.21	-2.3
3,094,413	+		DDA3937_RS13585	0.22	-0.3
3,094,413	+		DDA3937_RS13585	0.22	-1.8
3,094,413	+		DDA3937_RS13585	0.22	-0.9
3,094,413	+		DDA3937_RS13585	0.22	-2.6
3,094,414	-		DDA3937_RS13585	0.22	-0.6
3,094,414	-		DDA3937_RS13585	0.22	-1.4
3,094,414	-		DDA3937_RS13585	0.22	-1.2
3,094,425	+		DDA3937_RS13585	0.25	+0.1
3,094,426	-		DDA3937_RS13585	0.25	-1.3
3,094,581	+		DDA3937_RS13585	0.62	-0.3
3,094,581	+		DDA3937_RS13585	0.62	-0.0
3,094,582	-		DDA3937_RS13585	0.62	-1.1
3,094,582	-		DDA3937_RS13585	0.62	+0.1
3,094,610	-		DDA3937_RS13585	0.69	-0.0
3,094,687	-		DDA3937_RS13585	0.87	-0.5
3,094,687	-		DDA3937_RS13585	0.87	+0.0
3,094,687	-		DDA3937_RS13585	0.87	-0.1
3,094,700	-				-1.4
3,094,700	-				-1.3
3,094,700	-				-0.3
3,094,729	+				-1.3
3,094,730	-				+0.5
3,094,841	-		DDA3937_RS13590	0.12	+0.2
3,094,871	+		DDA3937_RS13590	0.18	+0.8
3,094,871	+		DDA3937_RS13590	0.18	-1.9
3,094,872	-		DDA3937_RS13590	0.19	+0.6
3,094,872	-		DDA3937_RS13590	0.19	+0.7
3,094,881	-		DDA3937_RS13590	0.20	+0.1
3,094,881	-		DDA3937_RS13590	0.20	+0.6
3,094,970	-		DDA3937_RS13590	0.39	-0.1
3,095,034	+		DDA3937_RS13590	0.52	-1.4
3,095,035	-		DDA3937_RS13590	0.53	-0.4
3,095,036	+		DDA3937_RS13590	0.53	-0.7
3,095,036	+		DDA3937_RS13590	0.53	-1.7
3,095,036	+		DDA3937_RS13590	0.53	-1.4
3,095,037	-		DDA3937_RS13590	0.53	-0.1
3,095,037	-		DDA3937_RS13590	0.53	-1.0
3,095,037	-		DDA3937_RS13590	0.53	-0.3
3,095,049	+		DDA3937_RS13590	0.55	-2.4
3,095,050	-		DDA3937_RS13590	0.56	-1.4
3,095,050	-		DDA3937_RS13590	0.56	+0.6
3,095,082	+		DDA3937_RS13590	0.62	+0.4
3,095,082	+		DDA3937_RS13590	0.62	-2.2
3,095,082	+		DDA3937_RS13590	0.62	-0.7
3,095,083	-		DDA3937_RS13590	0.62	+0.4
3,095,083	-		DDA3937_RS13590	0.62	+0.6
3,095,083	-		DDA3937_RS13590	0.62	-0.0
3,095,083	-		DDA3937_RS13590	0.62	-0.9
3,095,220	+				-1.6
3,095,221	-				-0.3
3,095,253	-				-1.4
3,095,253	-				+0.6
3,095,256	+				-0.8
3,095,256	+				-0.5
3,095,257	-				-1.2
3,095,265	+				+2.1
3,095,265	+				-1.8
3,095,266	-				+0.7
3,095,275	-				+0.1
3,095,275	-				-0.6
3,095,275	-				-1.4
3,095,275	-				-0.7
3,095,276	+				+0.0
3,095,276	+				-2.0
3,095,277	-				-0.4
3,095,299	+				-0.9
3,095,300	-				-2.1
3,095,300	-				+0.6
3,095,300	-				+0.4
3,095,300	-				-0.5
3,095,300	-				-0.4
3,095,300	-				-0.4
3,095,300	-				-1.3
3,095,300	-				-1.2
3,095,301	+				+0.6
3,095,301	+				-1.4
3,095,301	+				-0.4
3,095,301	+				+0.4
3,095,301	+				-0.2
3,095,301	+				-1.2
3,095,301	+				-0.4
3,095,301	+				+0.0
3,095,301	+				+0.1
3,095,301	+				+0.4
3,095,302	-				+0.1
3,095,302	-				-1.3
3,095,302	-				-1.5
3,095,302	-				-1.8
3,095,302	-				-0.7
3,095,302	-				+0.1
3,095,302	-				+0.1
3,095,302	-				+1.1
3,095,302	-				-0.9
3,095,302	-				-1.6
3,095,303	+				+1.1
3,095,303	+				-1.8
3,095,303	+				-0.3
3,095,303	+				+0.6
3,095,303	+				+1.5
3,095,303	+				+1.1
3,095,303	+				-0.9
3,095,303	+				+0.1
3,095,304	-				+0.6
3,095,304	-				-0.1
3,095,304	-				-0.4
3,095,306	-				-1.7
3,095,310	+				+0.3
3,095,310	+				-1.7
3,095,310	+				-2.9
3,095,310	+				+0.7
3,095,310	+				-2.0
3,095,311	-				+1.1
3,095,311	-				-0.5
3,095,311	-				+3.4
3,095,311	-				-0.4
3,095,333	+				-1.9
3,095,334	-				-1.4
3,095,334	-				-0.5
3,095,344	+				-0.2
3,095,344	+				-1.9
3,095,355	-				+0.1
3,095,355	-				+0.2
3,095,355	-				+0.3
3,095,356	+				+0.5
3,095,356	+				-1.2
3,095,357	-				+0.1
3,095,357	-				-1.8
3,095,357	-				+0.1
3,095,389	-				-0.9
3,095,399	+				-1.5
3,095,399	+				+0.7
3,095,399	+				-0.3
3,095,479	+				+0.4
3,095,480	-				-0.4
3,095,480	-				+0.4
3,095,480	-				+0.5
3,095,480	-				-0.1
3,095,486	-				-1.3
3,095,486	-				+0.3
3,095,487	+				+0.1
3,095,488	-				+0.4
3,095,488	-				+0.6
3,095,510	-				+3.4
3,095,510	-				-0.9
3,095,571	+				-1.4
3,095,572	-				+0.1
3,095,572	-				+2.3
3,095,596	+				+0.4
3,095,605	+				-0.4
3,095,605	+				-0.5
3,095,606	-				-0.3
3,095,606	-				-1.7
3,095,670	+				-1.3
3,095,670	+				+0.6
3,095,671	-				-0.2
3,095,671	-				-0.7
3,095,678	+				+0.1
3,095,679	-				+0.7
3,095,679	-				-0.7
3,095,679	-				-1.7
3,095,679	-				+1.1
3,095,679	-				+0.4
3,095,679	-				-1.1
3,095,679	-				+0.1
3,095,679	-				+4.8
3,095,679	-				+0.2
3,095,682	+				-1.0
3,095,683	-				-0.7
3,095,683	-				-1.4
3,095,683	-				-0.7
3,095,683	-				-1.4
3,095,697	+				-0.9
3,095,697	+				+0.6
3,095,698	-				-0.2
3,095,698	-				+0.1
3,095,718	+				-2.1
3,095,719	-				+0.4
3,095,719	-				-0.5