Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12935

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,951,127	+		DDA3937_RS12930	0.68	-0.5
2,951,127	+		DDA3937_RS12930	0.68	+0.7
2,951,127	+		DDA3937_RS12930	0.68	+0.1
2,951,202	+		DDA3937_RS12930	0.72	+4.6
2,951,202	+		DDA3937_RS12930	0.72	+1.2
2,951,203	-		DDA3937_RS12930	0.72	+0.6
2,951,203	-		DDA3937_RS12930	0.72	-0.0
2,951,203	-		DDA3937_RS12930	0.72	-1.0
2,951,203	-		DDA3937_RS12930	0.72	-2.2
2,951,203	-		DDA3937_RS12930	0.72	+0.5
2,951,204	+		DDA3937_RS12930	0.72	+0.7
2,951,205	-		DDA3937_RS12930	0.72	+0.8
2,951,205	-				+0.7
2,951,220	-		DDA3937_RS12930	0.73	+0.3
2,951,220	-		DDA3937_RS12930	0.73	-0.9
2,951,220	-		DDA3937_RS12930	0.73	+0.4
2,951,220	-		DDA3937_RS12930	0.73	+1.1
2,951,267	+		DDA3937_RS12930	0.76	+0.4
2,951,268	-		DDA3937_RS12930	0.76	+4.8
2,951,315	-		DDA3937_RS12930	0.79	+1.3
2,951,407	-		DDA3937_RS12930	0.84	+1.0
2,951,451	+		DDA3937_RS12930	0.87	-0.6
2,951,452	-		DDA3937_RS12930	0.87	-1.1
2,951,453	+		DDA3937_RS12930	0.87	+0.9
2,951,454	-		DDA3937_RS12930	0.87	-1.2
2,951,454	-		DDA3937_RS12930	0.87	-0.2
2,951,478	-		DDA3937_RS12930	0.89	+0.3
2,951,478	-		DDA3937_RS12930	0.89	+0.1
2,951,478	-		DDA3937_RS12930	0.89	+1.5
2,951,491	-		DDA3937_RS12930	0.89	-0.2
2,951,520	+				+1.1
2,951,520	+				-0.5
2,951,520	+				-0.9
2,951,520	+				+2.7
2,951,520	+				-0.1
2,951,521	-				-0.1
2,951,521	-				+1.5
2,951,521	-				+0.2
2,951,605	-				-1.2
2,951,650	-				+1.7
2,951,650	-				+0.8
2,951,662	+				+0.2
2,951,676	+				-0.6
2,951,685	+				-0.5
2,951,685	+				-0.3
2,951,686	-				-0.8
2,951,686	-				-0.6
2,951,689	+				-1.1
2,951,689	+				+0.7
2,951,706	+				+0.2
2,951,766	+				-0.2
2,951,767	-				-2.6
2,951,768	+				+0.1
2,951,768	+				-0.2
2,951,768	+				+1.0
2,951,768	+				+2.2
2,951,769	-				-0.9
2,951,780	+				+0.6
2,951,803	+				+0.8
2,951,804	-				-2.4
2,951,804	-				+0.4
2,951,805	+				+1.1
2,951,805	+				+0.6
2,951,819	+				+1.5
2,951,819	+				+2.2
2,951,820	-				-0.6
2,951,853	+				+1.2
2,951,877	-				-1.1
2,951,877	-				-1.6
2,951,877	-				-1.5
2,951,879	-				-1.6
2,951,907	-				+0.3
2,951,907	-				-1.5
2,951,909	+				+0.3
2,951,919	-				-0.6
2,951,941	+				+1.7
2,951,942	-				-0.5
2,951,942	-				-1.3
2,951,942	-				-2.0
2,951,956	+				-0.1
2,951,957	-				-1.5
2,951,957	-				-0.1
2,952,097	-				-2.4
2,952,107	+				-0.4
2,952,107	+				+0.1
2,952,107	+				-2.2
2,952,107	+				-1.4
2,952,108	-				-0.6
2,952,108	-				-0.3
2,952,180	+		DDA3937_RS12935	0.11	+0.5
2,952,180	+		DDA3937_RS12935	0.11	-0.6
2,952,180	+		DDA3937_RS12935	0.11	+1.1
2,952,181	-		DDA3937_RS12935	0.12	-1.0
2,952,181	-		DDA3937_RS12935	0.12	-0.9
2,952,181	-		DDA3937_RS12935	0.12	-0.6
2,952,181	-		DDA3937_RS12935	0.12	+0.6
2,952,181	-		DDA3937_RS12935	0.12	-0.7
2,952,184	+		DDA3937_RS12935	0.12	-0.8
2,952,184	+		DDA3937_RS12935	0.12	-0.3
2,952,184	+		DDA3937_RS12935	0.12	-0.4
2,952,184	+		DDA3937_RS12935	0.12	-0.1
2,952,184	+		DDA3937_RS12935	0.12	-0.8
2,952,185	-		DDA3937_RS12935	0.12	-0.9
2,952,188	+		DDA3937_RS12935	0.12	+1.4
2,952,195	+		DDA3937_RS12935	0.12	+0.8
2,952,196	-		DDA3937_RS12935	0.13	+0.0
2,952,196	-		DDA3937_RS12935	0.13	-2.1
2,952,321	-		DDA3937_RS12935	0.21	+0.1
2,952,370	+		DDA3937_RS12935	0.25	+1.4
2,952,371	-		DDA3937_RS12935	0.25	-0.5
2,952,376	+		DDA3937_RS12935	0.25	-0.9
2,952,377	-		DDA3937_RS12935	0.25	-2.1
2,952,377	-		DDA3937_RS12935	0.25	-0.8
2,952,378	+		DDA3937_RS12935	0.25	-1.2
2,952,378	+		DDA3937_RS12935	0.25	+1.4
2,952,379	-		DDA3937_RS12935	0.25	-1.2
2,952,427	+		DDA3937_RS12935	0.28	-0.9
2,952,427	+		DDA3937_RS12935	0.28	-1.0
2,952,427	+		DDA3937_RS12935	0.28	+0.5
2,952,427	+		DDA3937_RS12935	0.28	-0.9
2,952,427	+		DDA3937_RS12935	0.28	+0.5
2,952,427	+		DDA3937_RS12935	0.28	-0.5
2,952,428	-		DDA3937_RS12935	0.29	-1.9
2,952,604	+		DDA3937_RS12935	0.41	-1.2
2,952,605	-		DDA3937_RS12935	0.41	+1.0
2,952,640	+		DDA3937_RS12935	0.43	-1.6
2,952,649	-				-0.5
2,952,697	+		DDA3937_RS12935	0.47	+0.1
2,952,697	+		DDA3937_RS12935	0.47	-0.2
2,952,715	+		DDA3937_RS12935	0.48	-1.2
2,952,715	+		DDA3937_RS12935	0.48	+0.5
2,952,715	+		DDA3937_RS12935	0.48	-1.3
2,952,715	+		DDA3937_RS12935	0.48	-0.0
2,952,715	+		DDA3937_RS12935	0.48	-0.7
2,952,715	+		DDA3937_RS12935	0.48	-0.1
2,952,715	+		DDA3937_RS12935	0.48	-0.5
2,952,715	+		DDA3937_RS12935	0.48	+0.4
2,952,715	+		DDA3937_RS12935	0.48	-0.8
2,952,716	-		DDA3937_RS12935	0.48	-1.5
2,952,716	-		DDA3937_RS12935	0.48	-1.7
2,952,716	-		DDA3937_RS12935	0.48	-0.2
2,952,716	-		DDA3937_RS12935	0.48	-0.9
2,952,716	-		DDA3937_RS12935	0.48	-1.5
2,952,716	-		DDA3937_RS12935	0.48	+1.9
2,952,716	-		DDA3937_RS12935	0.48	+0.8
2,952,716	-		DDA3937_RS12935	0.48	+1.6
2,952,716	-		DDA3937_RS12935	0.48	-1.4
2,952,810	+		DDA3937_RS12935	0.55	-0.5
2,952,810	+		DDA3937_RS12935	0.55	-1.1
2,952,811	-		DDA3937_RS12935	0.55	-1.2
2,952,811	-		DDA3937_RS12935	0.55	-2.2
2,952,813	+		DDA3937_RS12935	0.55	-1.2
2,952,813	+		DDA3937_RS12935	0.55	-0.2
2,952,813	+		DDA3937_RS12935	0.55	-0.3
2,952,814	-		DDA3937_RS12935	0.55	-0.7
2,952,814	-		DDA3937_RS12935	0.55	-2.1
2,952,861	+		DDA3937_RS12935	0.58	-2.2
2,952,861	+		DDA3937_RS12935	0.58	+1.5
2,952,861	+		DDA3937_RS12935	0.58	-0.1
2,952,861	+		DDA3937_RS12935	0.58	-0.4
2,952,861	+		DDA3937_RS12935	0.58	-0.9
2,952,861	+		DDA3937_RS12935	0.58	-1.1
2,952,862	-		DDA3937_RS12935	0.58	+1.1
2,952,862	-		DDA3937_RS12935	0.58	-0.5
2,952,862	-		DDA3937_RS12935	0.58	-0.4
2,952,862	-		DDA3937_RS12935	0.58	-0.8
2,952,903	+		DDA3937_RS12935	0.61	-0.7
2,952,903	+		DDA3937_RS12935	0.61	+0.1
2,952,904	-		DDA3937_RS12935	0.61	+0.1
2,952,954	-		DDA3937_RS12935	0.65	-0.2
2,953,116	+		DDA3937_RS12935	0.76	-0.6
2,953,116	+		DDA3937_RS12935	0.76	-1.2
2,953,156	+		DDA3937_RS12935	0.79	-0.1
2,953,156	+		DDA3937_RS12935	0.79	-2.4
2,953,156	+		DDA3937_RS12935	0.79	+0.1
2,953,157	-		DDA3937_RS12935	0.79	-0.2
2,953,157	-		DDA3937_RS12935	0.79	-0.9
2,953,245	+		DDA3937_RS12935	0.85	-1.2
2,953,245	+		DDA3937_RS12935	0.85	-0.6
2,953,245	+		DDA3937_RS12935	0.85	-0.0
2,953,245	+		DDA3937_RS12935	0.85	+0.1
2,953,246	-		DDA3937_RS12935	0.85	-1.2
2,953,246	-		DDA3937_RS12935	0.85	-0.2
2,953,247	+		DDA3937_RS12935	0.85	-0.3
2,953,247	+		DDA3937_RS12935	0.85	-0.1
2,953,248	-		DDA3937_RS12935	0.85	-0.4
2,953,274	+		DDA3937_RS12935	0.87	-0.1
2,953,360	+				+0.8
2,953,365	+				-0.4
2,953,366	-				+1.2
2,953,366	-				-1.1
2,953,367	+				+0.4
2,953,367	+				-0.1
2,953,367	+				-2.4
2,953,367	+				-1.0
2,953,368	-				+2.1
2,953,368	-				+0.5
2,953,368	-				+1.6
2,953,410	+				+0.8
2,953,410	+				+0.5
2,953,442	-				-1.7
2,953,449	-				+0.9
2,953,449	-				-3.1
2,953,465	+				-0.4
2,953,465	+				+2.1
2,953,465	+				-0.1
2,953,465	+				+0.0
2,953,489	+				+0.1
2,953,490	-				-1.7
2,953,490	-				-1.7
2,953,490	-				+0.7
2,953,490	-				-1.5
2,953,509	+				-1.0
2,953,519	+				-0.6
2,953,519	+				+0.9
2,953,519	+				+1.1
2,953,523	+				-2.6
2,953,525	+				+0.1
2,953,525	+				-0.5
2,953,526	-				-0.1
2,953,526	-				-1.3
2,953,554	+				-0.3
2,953,564	-				-0.9
2,953,564	-				-3.3
2,953,568	+				-2.6
2,953,568	+				-1.3
2,953,569	-				-1.7
2,953,590	+				-0.2
2,953,694	-				+2.0
2,953,694	-				-2.2
2,953,705	+		DDA3937_RS12940	0.10	+0.1
2,953,749	+		DDA3937_RS12940	0.16	+1.5
2,953,749	+		DDA3937_RS12940	0.16	-1.2
2,953,749	+		DDA3937_RS12940	0.16	+1.5
2,953,749	+		DDA3937_RS12940	0.16	+0.1
2,953,753	-		DDA3937_RS12940	0.17	-0.6
2,953,753	-		DDA3937_RS12940	0.17	-1.4
2,953,753	-		DDA3937_RS12940	0.17	-0.5
2,953,821	+		DDA3937_RS12940	0.26	-1.2
2,953,822	-		DDA3937_RS12940	0.26	-0.4
2,953,855	-		DDA3937_RS12940	0.31	+1.2
2,953,987	-		DDA3937_RS12940	0.49	-0.3
2,954,002	+		DDA3937_RS12940	0.51	+0.3
2,954,003	-		DDA3937_RS12940	0.51	+0.1
2,954,004	+		DDA3937_RS12940	0.51	-1.5
2,954,004	+		DDA3937_RS12940	0.51	-0.5
2,954,004	+		DDA3937_RS12940	0.51	+0.6
2,954,086	+		DDA3937_RS12940	0.62	+1.2
2,954,100	+		DDA3937_RS12940	0.64	-0.3
2,954,100	+		DDA3937_RS12940	0.64	+0.7
2,954,100	+		DDA3937_RS12940	0.64	-0.7
2,954,101	-		DDA3937_RS12940	0.64	-0.3
2,954,310	-				+1.1
2,954,328	-				-0.9
2,954,339	+				+1.7
2,954,340	-				-1.9
2,954,364	+				-0.9
2,954,371	-				-0.0
2,954,371	-				+0.1
2,954,371	-				-1.3
2,954,371	-				-0.5
2,954,371	-				-0.8
2,954,371	-				+0.3
2,954,372	+				-0.4
2,954,382	-				-0.8
2,954,448	-				+0.1