Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11955

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,716,903	-				-0.8
2,716,903	-				-2.1
2,716,905	+				+1.8
2,716,905	+				-0.9
2,716,905	+				+0.1
2,716,905	+				+0.1
2,716,961	-				-1.6
2,716,977	-				-1.9
2,716,979	+				-0.3
2,716,979	+				+0.7
2,716,979	+				-0.8
2,716,980	-				-0.0
2,716,980	-				+1.9
2,716,980	-				+0.3
2,717,000	-				-1.5
2,717,068	+		DDA3937_RS11950	0.11	+1.1
2,717,068	+		DDA3937_RS11950	0.11	-2.2
2,717,068	+		DDA3937_RS11950	0.11	-0.7
2,717,237	-		DDA3937_RS11950	0.38	-1.2
2,717,237	-		DDA3937_RS11950	0.38	-1.5
2,717,288	-		DDA3937_RS11950	0.45	-0.7
2,717,306	+		DDA3937_RS11950	0.48	-0.8
2,717,429	-		DDA3937_RS11950	0.67	+1.1
2,717,477	-		DDA3937_RS11950	0.75	+0.3
2,717,525	-		DDA3937_RS11950	0.82	-1.4
2,717,556	+		DDA3937_RS11950	0.87	+1.1
2,717,556	+		DDA3937_RS11950	0.87	+0.1
2,717,557	-		DDA3937_RS11950	0.87	+1.1
2,717,557	-		DDA3937_RS11950	0.87	-1.1
2,717,733	+				-1.5
2,717,734	-				-0.6
2,717,741	+				-0.1
2,717,744	-				-1.2
2,717,749	+				-0.5
2,717,767	+				-1.2
2,717,792	+				-1.5
2,717,814	+				-1.7
2,717,818	+				+0.4
2,717,818	+				-1.2
2,717,819	-				+0.5
2,717,828	+				-2.9
2,717,839	+				-2.6
2,717,840	-				+1.8
2,717,840	-				+0.6
2,717,882	+				-2.4
2,717,919	+				-2.1
2,717,919	+				+0.5
2,717,919	+				+1.3
2,717,919	+				+0.2
2,717,919	+				-0.9
2,717,920	-				+0.7
2,717,920	-				-1.2
2,717,920	-				-0.6
2,717,921	+				-1.6
2,717,921	+				+0.9
2,717,922	-				-1.7
2,717,922	-				-0.2
2,717,922	-				-0.5
2,717,922	-				+0.0
2,717,958	+				+0.6
2,717,958	+				-0.4
2,717,958	+				+1.1
2,717,958	+				+0.4
2,717,958	+				+0.4
2,717,958	+				-0.7
2,717,958	+				-0.6
2,717,958	+				+0.8
2,717,958	+				-2.2
2,717,958	+				+1.1
2,717,959	-				-0.2
2,717,959	-				-0.8
2,717,959	-				+0.2
2,717,959	-				-0.7
2,717,959	-				-0.1
2,717,959	-				-0.2
2,717,959	-				+0.9
2,717,970	+				-2.1
2,717,971	-				+0.2
2,717,971	-				+0.1
2,717,971	-				-1.1
2,717,980	+				-0.8
2,717,980	+				-1.0
2,717,980	+				-0.5
2,717,980	+				+0.1
2,717,980	+				+0.3
2,717,980	+				-0.9
2,717,980	+				+0.7
2,717,980	+				+2.2
2,717,980	+				-1.5
2,717,980	+				-1.3
2,717,981	-				-0.2
2,717,981	-				-0.5
2,717,981	-				-0.7
2,717,981	-				+0.1
2,717,981	-				-1.5
2,717,981	-				-0.9
2,717,981	-				+0.5
2,718,093	+		DDA3937_RS11955	0.15	-0.9
2,718,094	-		DDA3937_RS11955	0.15	-0.2
2,718,094	-		DDA3937_RS11955	0.15	-0.6
2,718,170	+		DDA3937_RS11955	0.21	-1.4
2,718,170	+		DDA3937_RS11955	0.21	-0.1
2,718,312	+		DDA3937_RS11955	0.32	+2.3
2,718,313	-		DDA3937_RS11955	0.32	+0.4
2,718,338	+		DDA3937_RS11955	0.34	-0.6
2,718,355	+		DDA3937_RS11955	0.36	+1.3
2,718,355	+		DDA3937_RS11955	0.36	+0.8
2,718,381	+		DDA3937_RS11955	0.38	-1.5
2,718,382	-		DDA3937_RS11955	0.38	-0.7
2,718,435	+		DDA3937_RS11955	0.42	-0.9
2,718,435	+		DDA3937_RS11955	0.42	+0.3
2,718,435	+		DDA3937_RS11955	0.42	-1.4
2,718,436	-		DDA3937_RS11955	0.42	-1.1
2,718,516	+		DDA3937_RS11955	0.48	-0.9
2,718,517	-		DDA3937_RS11955	0.49	+2.1
2,718,517	-		DDA3937_RS11955	0.49	-0.9
2,718,520	+		DDA3937_RS11955	0.49	+0.1
2,718,521	-		DDA3937_RS11955	0.49	-0.1
2,718,553	+		DDA3937_RS11955	0.51	-1.1
2,718,553	+		DDA3937_RS11955	0.51	+0.1
2,718,553	+		DDA3937_RS11955	0.51	-0.8
2,718,553	+		DDA3937_RS11955	0.51	-1.7
2,718,553	+		DDA3937_RS11955	0.51	+1.6
2,718,554	-		DDA3937_RS11955	0.51	-1.5
2,718,554	-		DDA3937_RS11955	0.51	+4.3
2,718,554	-		DDA3937_RS11955	0.51	-1.0
2,718,555	+		DDA3937_RS11955	0.52	-1.7
2,718,555	+		DDA3937_RS11955	0.52	-1.9
2,718,567	+		DDA3937_RS11955	0.52	-0.9
2,718,568	-		DDA3937_RS11955	0.53	-1.7
2,718,581	-		DDA3937_RS11955	0.54	+0.5
2,718,710	+		DDA3937_RS11955	0.64	+0.8
2,718,710	+		DDA3937_RS11955	0.64	+1.0
2,718,725	+		DDA3937_RS11955	0.65	-0.2
2,718,725	+		DDA3937_RS11955	0.65	-1.0
2,718,746	+		DDA3937_RS11955	0.67	-0.6
2,718,746	+		DDA3937_RS11955	0.67	-0.4
2,718,747	-		DDA3937_RS11955	0.67	-0.6
2,718,768	+		DDA3937_RS11955	0.68	-0.7
2,718,769	-		DDA3937_RS11955	0.68	-1.5
2,718,808	+		DDA3937_RS11955	0.71	-0.2
2,718,809	-		DDA3937_RS11955	0.72	+0.1
2,718,923	-		DDA3937_RS11955	0.81	-0.7
2,718,926	+		DDA3937_RS11955	0.81	-0.7
2,718,926	+		DDA3937_RS11955	0.81	-0.1
2,718,926	+		DDA3937_RS11955	0.81	-0.2
2,718,927	-		DDA3937_RS11955	0.81	-0.7
2,718,927	-		DDA3937_RS11955	0.81	-0.2
2,718,927	-		DDA3937_RS11955	0.81	+1.1
2,718,970	+		DDA3937_RS11955	0.84	-0.4
2,719,078	+				-0.3
2,719,078	+				-1.9
2,719,078	+				-1.3
2,719,079	-				-1.1
2,719,217	+				-0.5
2,719,218	-				-2.2
2,719,239	-				-2.2
2,719,255	+				-1.5
2,719,256	-				-1.5
2,719,260	-				-1.0
2,719,270	+				-0.0
2,719,270	+				-2.4
2,719,270	+				-1.9
2,719,270	+				+1.2
2,719,270	+				-0.9
2,719,270	+				+2.7
2,719,270	+				-0.3
2,719,270	+				-0.5
2,719,270	+				+0.0
2,719,270	+				+0.2
2,719,271	-				-1.2
2,719,271	-				-0.1
2,719,271	-				-1.6
2,719,271	-				+0.1
2,719,271	-				-1.1
2,719,271	-				-2.1
2,719,271	-				-0.9
2,719,271	-				+0.6
2,719,272	+				-0.9
2,719,273	-				+1.1
2,719,276	+				+1.1
2,719,276	+				-0.8
2,719,300	-				+1.6
2,719,380	+				-1.4
2,719,516	+		DDA3937_RS11960	0.12	-1.1
2,719,516	+		DDA3937_RS11960	0.12	-0.7
2,719,638	-		DDA3937_RS11960	0.23	-0.0
2,719,655	+		DDA3937_RS11960	0.25	-0.4
2,719,656	-		DDA3937_RS11960	0.25	+2.0
2,719,713	+		DDA3937_RS11960	0.30	-0.7
2,719,713	+		DDA3937_RS11960	0.30	-0.5
2,719,713	+		DDA3937_RS11960	0.30	-0.9
2,719,714	-		DDA3937_RS11960	0.31	-0.1
2,719,714	-		DDA3937_RS11960	0.31	-0.4
2,719,714	-		DDA3937_RS11960	0.31	-0.2
2,719,714	-		DDA3937_RS11960	0.31	-0.7
2,719,714	-		DDA3937_RS11960	0.31	+1.3
2,719,931	+		DDA3937_RS11960	0.51	-0.5
2,719,932	-		DDA3937_RS11960	0.51	-1.5
2,719,932	-		DDA3937_RS11960	0.51	-0.1
2,719,986	-		DDA3937_RS11960	0.56	+0.2
2,720,039	+		DDA3937_RS11960	0.61	-2.2
2,720,040	-		DDA3937_RS11960	0.61	+0.5
2,720,040	-		DDA3937_RS11960	0.61	+0.6
2,720,040	-		DDA3937_RS11960	0.61	+1.1
2,720,113	+		DDA3937_RS11960	0.68	-1.2
2,720,164	+		DDA3937_RS11960	0.73	+0.2
2,720,164	+		DDA3937_RS11960	0.73	+0.9
2,720,165	-		DDA3937_RS11960	0.73	-1.4
2,720,165	-		DDA3937_RS11960	0.73	-1.2
2,720,165	-		DDA3937_RS11960	0.73	-0.9
2,720,168	+		DDA3937_RS11960	0.74	+0.1
2,720,168	+		DDA3937_RS11960	0.74	+3.0
2,720,169	-		DDA3937_RS11960	0.74	-0.8