Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11320

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,571,086	+				-0.6
2,571,087	-				-0.9
2,571,087	-				-1.8
2,571,087	-				-1.3
2,571,103	+				-0.8
2,571,108	+				-1.4
2,571,108	+				-0.3
2,571,108	+				-1.0
2,571,109	-				-0.8
2,571,109	-				-1.8
2,571,109	-				+1.0
2,571,109	-				-0.8
2,571,142	+				+0.5
2,571,142	+				+0.3
2,571,142	+				+0.1
2,571,142	+				+0.0
2,571,142	+				+1.0
2,571,143	-				+0.1
2,571,143	-				-1.0
2,571,143	-				-1.3
2,571,143	-				-0.6
2,571,143	-				-1.1
2,571,143	-				+0.4
2,571,143	-				-0.5
2,571,143	-				-0.4
2,571,193	+				+0.5
2,571,214	-				-1.6
2,571,395	+		DDA3937_RS11315	0.29	+0.7
2,571,395	+		DDA3937_RS11315	0.29	-1.3
2,571,416	+		DDA3937_RS11315	0.32	+0.2
2,571,417	-		DDA3937_RS11315	0.32	-0.5
2,571,531	+		DDA3937_RS11315	0.45	-1.4
2,571,531	+		DDA3937_RS11315	0.45	-0.6
2,571,532	-		DDA3937_RS11315	0.45	+2.0
2,571,595	+		DDA3937_RS11315	0.53	-1.1
2,571,595	+		DDA3937_RS11315	0.53	+0.4
2,571,595	+		DDA3937_RS11315	0.53	-0.1
2,571,596	-		DDA3937_RS11315	0.53	-0.9
2,571,596	-		DDA3937_RS11315	0.53	-1.1
2,571,708	+		DDA3937_RS11315	0.66	-0.5
2,571,708	+		DDA3937_RS11315	0.66	+0.6
2,571,708	+		DDA3937_RS11315	0.66	-0.8
2,571,758	+		DDA3937_RS11315	0.72	-0.4
2,571,761	+		DDA3937_RS11315	0.72	-0.4
2,571,762	-		DDA3937_RS11315	0.72	-1.2
2,571,807	+		DDA3937_RS11315	0.77	-1.1
2,571,848	+		DDA3937_RS11315	0.82	-0.8
2,571,858	-		DDA3937_RS11315	0.83	-1.0
2,571,909	-		DDA3937_RS11315	0.89	+0.3
2,571,917	+				-1.1
2,571,917	+				+0.4
2,571,918	-				+0.2
2,571,918	-				-0.8
2,571,921	-				+0.0
2,571,921	-				-0.2
2,571,921	-				-1.3
2,571,996	+				-0.4
2,571,996	+				-0.1
2,571,997	-				+0.3
2,571,997	-				-0.2
2,571,997	-				+0.9
2,572,042	+				+1.5
2,572,043	-				+0.3
2,572,043	-				-0.5
2,572,113	+		DDA3937_RS11320	0.12	+2.5
2,572,113	+		DDA3937_RS11320	0.12	-0.2
2,572,113	+		DDA3937_RS11320	0.12	-0.7
2,572,113	+		DDA3937_RS11320	0.12	+0.4
2,572,113	+		DDA3937_RS11320	0.12	-1.3
2,572,113	+		DDA3937_RS11320	0.12	+5.1
2,572,113	+		DDA3937_RS11320	0.12	-0.3
2,572,113	+		DDA3937_RS11320	0.12	-0.9
2,572,113	+		DDA3937_RS11320	0.12	+0.7
2,572,113	+		DDA3937_RS11320	0.12	-0.7
2,572,114	-		DDA3937_RS11320	0.12	+0.5
2,572,114	-		DDA3937_RS11320	0.12	-0.2
2,572,114	-		DDA3937_RS11320	0.12	-2.4
2,572,114	-		DDA3937_RS11320	0.12	+1.0
2,572,114	-		DDA3937_RS11320	0.12	+0.8
2,572,114	-		DDA3937_RS11320	0.12	-1.5
2,572,114	-		DDA3937_RS11320	0.12	-0.1
2,572,114	-		DDA3937_RS11320	0.12	+0.3
2,572,114	-		DDA3937_RS11320	0.12	+0.7
2,572,114	-		DDA3937_RS11320	0.12	-0.0
2,572,114	-		DDA3937_RS11320	0.12	-0.1
2,572,114	-		DDA3937_RS11320	0.12	-1.2
2,572,114	-		DDA3937_RS11320	0.12	-0.3
2,572,139	-		DDA3937_RS11320	0.17	-1.0
2,572,142	-				-0.6
2,572,142	-		DDA3937_RS11320	0.17	+0.2
2,572,142	-		DDA3937_RS11320	0.17	+0.5
2,572,152	-		DDA3937_RS11320	0.19	+0.3
2,572,186	+		DDA3937_RS11320	0.26	-1.4
2,572,186	+		DDA3937_RS11320	0.26	-0.6
2,572,243	+		DDA3937_RS11320	0.36	-0.8
2,572,277	+		DDA3937_RS11320	0.42	-1.1
2,572,311	+		DDA3937_RS11320	0.48	-1.8
2,572,311	+		DDA3937_RS11320	0.48	-0.8
2,572,312	-		DDA3937_RS11320	0.48	+0.0
2,572,312	-		DDA3937_RS11320	0.48	-0.5
2,572,312	-		DDA3937_RS11320	0.48	-1.4
2,572,377	+		DDA3937_RS11320	0.60	-1.0
2,572,489	+		DDA3937_RS11320	0.81	+0.2
2,572,490	-		DDA3937_RS11320	0.81	-0.2
2,572,490	-		DDA3937_RS11320	0.81	-0.0
2,572,490	-		DDA3937_RS11320	0.81	-1.1
2,572,490	-		DDA3937_RS11320	0.81	-0.6
2,572,490	-		DDA3937_RS11320	0.81	-0.1
2,572,507	+		DDA3937_RS11320	0.84	+1.4
2,572,507	+		DDA3937_RS11320	0.84	-1.3
2,572,587	+				-0.7
2,572,587	+				+1.0
2,572,587	+				-1.0
2,572,588	-				-0.5
2,572,649	+				-0.8
2,572,650	-				-0.4
2,572,650	-				+0.2
2,572,650	-				-1.0
2,572,658	-				-1.6
2,572,674	+				-1.1
2,572,771	-				-0.2
2,572,832	-				-0.7
2,572,834	+				-3.0
2,572,834	+				+1.0
2,572,834	+				-0.9
2,572,834	+				-1.6
2,572,835	-				-1.5
2,572,835	-				+3.3
2,572,835	-				+0.4
2,572,837	+				+0.0
2,572,838	-				+0.0
2,572,838	-				-0.6
2,572,838	-				-1.0
2,572,838	-				-1.6
2,572,910	-		DDA3937_RS11325	0.19	-2.0
2,572,912	+		DDA3937_RS11325	0.20	-0.2
2,572,912	+		DDA3937_RS11325	0.20	-1.3
2,572,912	+		DDA3937_RS11325	0.20	-0.5
2,572,913	-		DDA3937_RS11325	0.20	+0.1
2,572,913	-		DDA3937_RS11325	0.20	-1.8
2,572,941	+		DDA3937_RS11325	0.29	-1.3
2,572,941	+		DDA3937_RS11325	0.29	-0.8
2,572,942	-		DDA3937_RS11325	0.29	+5.0
2,572,942	-		DDA3937_RS11325	0.29	+0.7
2,572,943	+		DDA3937_RS11325	0.29	+0.2
2,572,943	+		DDA3937_RS11325	0.29	+0.1
2,572,943	+		DDA3937_RS11325	0.29	-1.8
2,572,943	+		DDA3937_RS11325	0.29	-1.0
2,572,943	+		DDA3937_RS11325	0.29	-1.0
2,572,943	+				+0.0
2,572,943	+		DDA3937_RS11325	0.29	-1.0
2,572,944	-		DDA3937_RS11325	0.29	+0.4
2,572,944	-		DDA3937_RS11325	0.29	+0.0
2,572,944	-		DDA3937_RS11325	0.29	-0.1
2,572,944	-		DDA3937_RS11325	0.29	+0.0
2,572,944	-		DDA3937_RS11325	0.29	+1.0
2,572,944	-		DDA3937_RS11325	0.29	-1.6
2,572,944	-		DDA3937_RS11325	0.29	-1.7
2,572,944	-		DDA3937_RS11325	0.29	-2.0
2,572,944	-		DDA3937_RS11325	0.29	-1.3
2,572,944	-		DDA3937_RS11325	0.29	-2.4
2,572,944	-		DDA3937_RS11325	0.29	-0.2
2,573,012	+		DDA3937_RS11325	0.50	-0.6
2,573,012	+		DDA3937_RS11325	0.50	-0.9
2,573,012	+		DDA3937_RS11325	0.50	+0.1
2,573,121	+		DDA3937_RS11325	0.83	+0.7
2,573,163	+				-1.8
2,573,164	-				+0.0
2,573,168	+				-0.4
2,573,197	+				-1.1
2,573,197	+				-2.3
2,573,197	+				+0.0
2,573,197	+				-2.4
2,573,197	+				+0.4
2,573,197	+				-0.1
2,573,198	-				-0.8
2,573,198	-				-0.3
2,573,199	+				-0.8
2,573,199	+				-0.8
2,573,200	-				-0.5
2,573,200	-				-1.1
2,573,200	-				-1.0
2,573,200	-				+1.0
2,573,200	-				-1.1
2,573,226	+				+0.0
2,573,226	+				+1.8
2,573,226	+				-0.1
2,573,238	+				-0.6
2,573,238	+				+0.4
2,573,238	+				+2.4
2,573,238	+				-0.0
2,573,242	+				-1.0
2,573,242	+				-0.2
2,573,243	-				-0.8
2,573,243	-				-1.8
2,573,253	+				-0.2
2,573,253	+				+1.0
2,573,253	+				-0.6
2,573,254	-				-0.1
2,573,254	-				-0.4
2,573,254	-				+1.0
2,573,254	-				-0.8
2,573,254	-				+0.3
2,573,254	-				-1.4
2,573,254	-				-2.4
2,573,254	-				+1.4
2,573,254	-				+0.2
2,573,254	-				-1.3
2,573,256	+				-0.6
2,573,256	+				-0.8
2,573,256	+				+0.0
2,573,269	-				-0.1
2,573,280	-				-0.6
2,573,362	-				-0.7
2,573,375	-				-2.1
2,573,375	-				-1.3
2,573,481	-				-2.3
2,573,481	-				-2.8
2,573,526	-				-1.8