Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10755

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,418,172	+				-0.2
2,418,173	-				+0.0
2,418,223	-				-1.7
2,418,264	+				+0.9
2,418,264	+				+2.7
2,418,266	+				-2.2
2,418,266	+				-1.0
2,418,267	-				-0.2
2,418,303	+				-1.3
2,418,303	+				-0.3
2,418,304	-				-1.4
2,418,304	-				+1.6
2,418,304	-				-0.9
2,418,318	+				-0.3
2,418,318	+				-0.2
2,418,337	+				-2.4
2,418,338	-				-1.0
2,418,338	-				+0.5
2,418,420	+		DDA3937_RS10750	0.15	+0.5
2,418,421	-		DDA3937_RS10750	0.15	-0.2
2,418,426	-		DDA3937_RS10750	0.16	-0.2
2,418,426	-		DDA3937_RS10750	0.16	-1.6
2,418,497	+		DDA3937_RS10750	0.26	+0.2
2,418,497	+		DDA3937_RS10750	0.26	-0.7
2,418,497	+		DDA3937_RS10750	0.26	+0.4
2,418,498	-		DDA3937_RS10750	0.26	-1.3
2,418,525	-		DDA3937_RS10750	0.30	-0.1
2,418,557	+		DDA3937_RS10750	0.35	+0.8
2,418,558	-		DDA3937_RS10750	0.35	-0.7
2,418,620	+		DDA3937_RS10750	0.44	-1.3
2,418,620	+		DDA3937_RS10750	0.44	-1.6
2,418,621	-		DDA3937_RS10750	0.44	+0.1
2,418,622	+		DDA3937_RS10750	0.45	-0.3
2,418,622	+		DDA3937_RS10750	0.45	-0.6
2,418,622	+		DDA3937_RS10750	0.45	-2.7
2,418,622	+		DDA3937_RS10750	0.45	+0.7
2,418,622	+		DDA3937_RS10750	0.45	+0.0
2,418,623	-		DDA3937_RS10750	0.45	-1.3
2,418,693	+		DDA3937_RS10750	0.55	-1.1
2,418,693	+		DDA3937_RS10750	0.55	-1.0
2,418,693	+		DDA3937_RS10750	0.55	+2.1
2,418,694	-		DDA3937_RS10750	0.55	-1.1
2,418,694	-		DDA3937_RS10750	0.55	-0.8
2,418,713	-		DDA3937_RS10750	0.58	-1.0
2,418,779	+		DDA3937_RS10750	0.68	-1.3
2,418,780	-		DDA3937_RS10750	0.68	-2.0
2,418,780	-		DDA3937_RS10750	0.68	-0.1
2,418,780	-		DDA3937_RS10750	0.68	+1.6
2,418,796	+				+2.6
2,418,797	-		DDA3937_RS10750	0.70	+1.5
2,418,836	+		DDA3937_RS10750	0.76	-1.0
2,418,836	+		DDA3937_RS10750	0.76	+1.5
2,418,836	+		DDA3937_RS10750	0.76	+0.3
2,418,836	+		DDA3937_RS10750	0.76	+0.6
2,418,836	+		DDA3937_RS10750	0.76	-2.2
2,418,836	+				+0.4
2,418,837	-		DDA3937_RS10750	0.76	-0.4
2,418,837	-		DDA3937_RS10750	0.76	-1.4
2,418,837	-		DDA3937_RS10750	0.76	-0.1
2,418,837	-		DDA3937_RS10750	0.76	+0.4
2,418,837	-		DDA3937_RS10750	0.76	+0.6
2,418,851	+		DDA3937_RS10750	0.78	+0.3
2,418,851	+		DDA3937_RS10750	0.78	-1.1
2,418,851	+		DDA3937_RS10750	0.78	-0.3
2,418,851	+		DDA3937_RS10750	0.78	+0.9
2,418,852	-		DDA3937_RS10750	0.78	+2.0
2,418,852	-		DDA3937_RS10750	0.78	-0.6
2,418,859	+		DDA3937_RS10750	0.79	-0.2
2,418,860	-		DDA3937_RS10750	0.79	-2.7
2,418,860	-		DDA3937_RS10750	0.79	-1.8
2,418,884	+		DDA3937_RS10750	0.83	-0.6
2,418,884	+		DDA3937_RS10750	0.83	-2.2
2,418,884	+		DDA3937_RS10750	0.83	+0.0
2,418,885	-		DDA3937_RS10750	0.83	-1.3
2,418,885	-		DDA3937_RS10750	0.83	-0.4
2,418,885	-		DDA3937_RS10750	0.83	+0.1
2,418,885	-		DDA3937_RS10750	0.83	-0.4
2,418,885	-		DDA3937_RS10750	0.83	+0.1
2,418,892	+		DDA3937_RS10750	0.84	+0.0
2,418,893	-		DDA3937_RS10750	0.84	-0.3
2,418,998	+				-1.3
2,418,998	+				-1.3
2,418,998	+				-0.5
2,418,999	-				+2.1
2,419,076	-				-0.6
2,419,091	-				+2.2
2,419,106	+				-0.7
2,419,107	-				+1.6
2,419,148	-				+0.8
2,419,148	-				-1.6
2,419,148	-				-1.7
2,419,151	+				+1.0
2,419,180	+				-1.7
2,419,317	+		DDA3937_RS10755	0.29	-0.4
2,419,443	+		DDA3937_RS10755	0.49	-0.1
2,419,444	-		DDA3937_RS10755	0.50	-0.9
2,419,461	-		DDA3937_RS10755	0.52	-0.1
2,419,683	+		DDA3937_RS10755	0.87	-0.6
2,419,701	+				+0.4
2,419,702	-				+1.0
2,419,759	+				-0.6
2,419,759	+				+0.0
2,419,759	+				-0.4
2,419,759	+				-0.1
2,419,759	+				-0.8
2,419,759	+				+0.6
2,419,759	+				-1.3
2,419,760	-				-2.2
2,419,760	-				-0.9
2,419,760	-				-2.8
2,419,760	-				-2.2
2,419,760	-				-0.3
2,419,843	+		DDA3937_RS10760	0.14	-0.9
2,419,843	+				-0.6
2,419,955	-		DDA3937_RS10760	0.32	+0.4
2,420,008	+		DDA3937_RS10760	0.41	-1.2
2,420,008	+		DDA3937_RS10760	0.41	-1.1
2,420,008	+		DDA3937_RS10760	0.41	+1.2
2,420,008	+		DDA3937_RS10760	0.41	-0.9
2,420,008	+		DDA3937_RS10760	0.41	+1.0
2,420,009	-		DDA3937_RS10760	0.41	+0.5
2,420,009	-		DDA3937_RS10760	0.41	+0.9
2,420,009	-		DDA3937_RS10760	0.41	+0.0
2,420,009	-		DDA3937_RS10760	0.41	+1.0
2,420,045	+		DDA3937_RS10760	0.47	-0.2
2,420,064	+		DDA3937_RS10760	0.50	-0.4
2,420,065	-		DDA3937_RS10760	0.50	-0.0
2,420,065	-		DDA3937_RS10760	0.50	-1.3
2,420,065	-		DDA3937_RS10760	0.50	-2.8
2,420,065	-		DDA3937_RS10760	0.50	+0.1
2,420,430	+				-0.6
2,420,430	+				-0.8
2,420,472	+				-1.0
2,420,562	+		DDA3937_RS10765	0.11	-2.6
2,420,563	-		DDA3937_RS10765	0.11	-0.4
2,420,563	-		DDA3937_RS10765	0.11	-1.3
2,420,563	-		DDA3937_RS10765	0.11	+0.4
2,420,566	+		DDA3937_RS10765	0.12	+0.5
2,420,567	-		DDA3937_RS10765	0.12	+0.3
2,420,589	-		DDA3937_RS10765	0.13	+1.1
2,420,598	+		DDA3937_RS10765	0.14	-2.3
2,420,598	+		DDA3937_RS10765	0.14	+0.4
2,420,598	+		DDA3937_RS10765	0.14	+2.2
2,420,598	+		DDA3937_RS10765	0.14	-0.8
2,420,693	+		DDA3937_RS10765	0.19	-0.4
2,420,736	+		DDA3937_RS10765	0.22	-1.4
2,420,756	-		DDA3937_RS10765	0.23	-0.7
2,420,756	-		DDA3937_RS10765	0.23	-1.3
2,420,756	-		DDA3937_RS10765	0.23	-0.9
2,420,756	-		DDA3937_RS10765	0.23	-0.3
2,420,756	-		DDA3937_RS10765	0.23	-2.4