Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09460

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,130,944	+				+1.0
2,130,944	+				-0.3
2,130,944	+				+0.1
2,130,945	-				-0.9
2,130,945	-				-0.9
2,130,945	-				-0.0
2,130,966	+				+0.3
2,130,966	+				-0.8
2,130,966	+				-0.3
2,130,966	+				-0.0
2,130,994	+				-0.4
2,130,994	+				-0.1
2,130,994	+				+1.0
2,130,994	+				-2.5
2,130,995	-				+0.9
2,131,075	+		DDA3937_RS09455	0.14	-0.4
2,131,075	+		DDA3937_RS09455	0.14	-0.6
2,131,076	-				-0.5
2,131,146	+		DDA3937_RS09455	0.29	+1.3
2,131,146	+		DDA3937_RS09455	0.29	-1.2
2,131,468	-				-1.1
2,131,527	-				-0.0
2,131,547	-				-1.6
2,131,547	-				+0.9
2,131,611	+				+0.3
2,131,611	+				+0.8
2,131,611	+				+0.4
2,131,611	+				-1.5
2,131,611	+				-0.1
2,131,615	+				+0.9
2,131,626	+				+0.2
2,131,627	-				-0.9
2,131,627	-				-0.4
2,131,630	+				-0.9
2,131,674	+				+0.4
2,131,686	+				+0.3
2,131,687	-				-0.4
2,131,693	+				-0.2
2,131,694	-				-0.5
2,131,701	+				+0.8
2,131,702	-				-0.7
2,131,760	+				-0.3
2,131,761	-				-2.5
2,131,826	+				+0.3
2,131,827	-				-0.3
2,131,827	-				+0.2
2,131,839	+				+1.7
2,131,840	-				-0.5
2,131,840	-				+0.9
2,131,840	-				+0.0
2,131,840	-				+0.8
2,131,840	-				-0.1
2,131,841	+				-0.2
2,131,841	+				+1.0
2,131,841	+				-0.5
2,131,842	-				+2.1
2,131,842	-				+0.9
2,131,842	-				+0.7
2,131,842	-				+0.7
2,131,842	-				-1.0
2,131,842	-				+1.3
2,131,846	-				-0.8
2,131,855	+				+1.4
2,131,855	+				-1.6
2,131,886	+				-1.1
2,131,909	+				+0.6
2,131,919	-				+1.1
2,131,919	-				-1.9
2,131,919	-				-0.3
2,131,919	-				-1.5
2,131,971	+				+1.1
2,131,974	-				+0.6
2,131,986	+		DDA3937_RS09460	0.10	-0.5
2,131,987	-		DDA3937_RS09460	0.10	-1.7
2,131,987	-		DDA3937_RS09460	0.10	+1.1
2,131,988	+		DDA3937_RS09460	0.10	+1.6
2,131,988	+		DDA3937_RS09460	0.10	+1.1
2,131,989	-		DDA3937_RS09460	0.11	-0.5
2,132,034	-		DDA3937_RS09460	0.15	+0.4
2,132,043	+		DDA3937_RS09460	0.15	-0.2
2,132,043	+		DDA3937_RS09460	0.15	-3.0
2,132,043	+		DDA3937_RS09460	0.15	-0.5
2,132,043	+		DDA3937_RS09460	0.15	-2.3
2,132,044	-		DDA3937_RS09460	0.15	-0.3
2,132,147	+		DDA3937_RS09460	0.25	-4.8
2,132,249	+		DDA3937_RS09460	0.34	-0.1
2,132,249	+		DDA3937_RS09460	0.34	-0.8
2,132,250	-		DDA3937_RS09460	0.34	+1.1
2,132,253	+		DDA3937_RS09460	0.34	-0.1
2,132,253	+		DDA3937_RS09460	0.34	-0.5
2,132,253	+		DDA3937_RS09460	0.34	+0.8
2,132,254	-		DDA3937_RS09460	0.34	-0.4
2,132,265	+		DDA3937_RS09460	0.35	-0.3
2,132,293	-		DDA3937_RS09460	0.38	-0.5
2,132,427	+		DDA3937_RS09460	0.50	+3.2
2,132,445	+		DDA3937_RS09460	0.52	+0.3
2,132,445	+		DDA3937_RS09460	0.52	-0.2
2,132,445	+		DDA3937_RS09460	0.52	+1.0
2,132,446	-		DDA3937_RS09460	0.52	-0.5
2,132,446	-		DDA3937_RS09460	0.52	-1.9
2,132,446	-		DDA3937_RS09460	0.52	-0.5
2,132,484	+		DDA3937_RS09460	0.55	-0.3
2,132,536	-		DDA3937_RS09460	0.60	+0.9
2,132,536	-		DDA3937_RS09460	0.60	-0.5
2,132,553	+		DDA3937_RS09460	0.61	+1.6
2,132,553	+		DDA3937_RS09460	0.61	-0.6
2,132,554	-		DDA3937_RS09460	0.61	-1.7
2,132,587	+		DDA3937_RS09460	0.64	+0.5
2,132,588	-		DDA3937_RS09460	0.65	-1.9
2,132,588	-		DDA3937_RS09460	0.65	+0.4
2,132,591	+		DDA3937_RS09460	0.65	-0.4
2,132,654	-		DDA3937_RS09460	0.70	+0.3
2,132,654	-		DDA3937_RS09460	0.70	-1.0
2,132,664	+		DDA3937_RS09460	0.71	+0.5
2,132,665	-		DDA3937_RS09460	0.71	+0.1
2,132,665	-		DDA3937_RS09460	0.71	+0.1
2,132,665	-		DDA3937_RS09460	0.71	+0.3
2,132,665	-				+0.1
2,132,665	-		DDA3937_RS09460	0.71	-0.2
2,132,745	+		DDA3937_RS09460	0.79	+0.5
2,132,745	+		DDA3937_RS09460	0.79	-0.9
2,132,760	+				+1.9
2,132,760	+		DDA3937_RS09460	0.80	+0.3
2,132,760	+		DDA3937_RS09460	0.80	-0.6
2,132,760	+		DDA3937_RS09460	0.80	-1.2
2,132,761	-		DDA3937_RS09460	0.80	-0.3
2,132,761	-		DDA3937_RS09460	0.80	-0.0
2,132,761	-		DDA3937_RS09460	0.80	+0.7
2,132,761	-				+1.1
2,132,761	-		DDA3937_RS09460	0.80	+2.4
2,132,761	-		DDA3937_RS09460	0.80	+0.2
2,132,761	-		DDA3937_RS09460	0.80	-0.4
2,132,795	+		DDA3937_RS09460	0.83	-0.6
2,132,805	+		DDA3937_RS09460	0.84	-0.8
2,132,805	+		DDA3937_RS09460	0.84	-0.5
2,132,805	+		DDA3937_RS09460	0.84	-0.0
2,132,805	+		DDA3937_RS09460	0.84	-0.5
2,132,805	+		DDA3937_RS09460	0.84	-0.8
2,132,805	+		DDA3937_RS09460	0.84	+1.3
2,132,805	+		DDA3937_RS09460	0.84	-1.0
2,132,806	-		DDA3937_RS09460	0.84	-0.1
2,132,806	-		DDA3937_RS09460	0.84	-3.1
2,132,806	-		DDA3937_RS09460	0.84	-0.4
2,132,808	+		DDA3937_RS09460	0.84	-0.5
2,132,808	+		DDA3937_RS09460	0.84	+0.5
2,132,809	-		DDA3937_RS09460	0.84	+0.3
2,132,820	-		DDA3937_RS09460	0.85	-0.3
2,132,820	-		DDA3937_RS09460	0.85	-1.1
2,132,874	+				-2.1
2,132,874	+				-0.4
2,132,874	+				-1.9
2,132,875	-				-0.5
2,132,946	-				-0.8
2,132,965	+				+0.9
2,132,966	-				-1.9
2,132,980	-				-0.8
2,133,038	+				-0.3
2,133,038	+				+1.6
2,133,038	+				+1.1
2,133,038	+				+0.2
2,133,039	-				-1.9
2,133,093	+				-2.8
2,133,093	+				-0.9
2,133,093	+				-0.3
2,133,093	+				+1.3
2,133,093	+				-0.9
2,133,093	+				-0.8
2,133,093	+				-0.9
2,133,094	-				-0.8
2,133,094	-				-0.9
2,133,094	-				+1.1
2,133,096	+				+1.1
2,133,096	+				+0.2
2,133,097	-				-1.1
2,133,097	-				-0.9
2,133,097	-				-0.5
2,133,097	-				+0.1
2,133,097	-				+0.3
2,133,183	+				-0.5
2,133,225	+		DDA3937_RS09465	0.11	+0.2
2,133,225	+		DDA3937_RS09465	0.11	-0.1
2,133,225	+		DDA3937_RS09465	0.11	+0.2
2,133,225	+		DDA3937_RS09465	0.11	-0.7
2,133,225	+		DDA3937_RS09465	0.11	-0.7
2,133,225	+		DDA3937_RS09465	0.11	-0.9
2,133,225	+		DDA3937_RS09465	0.11	-0.1
2,133,225	+		DDA3937_RS09465	0.11	+1.0
2,133,225	+		DDA3937_RS09465	0.11	+0.5
2,133,226	-		DDA3937_RS09465	0.11	+0.6
2,133,226	-		DDA3937_RS09465	0.11	-0.6
2,133,226	-		DDA3937_RS09465	0.11	-0.0
2,133,226	-		DDA3937_RS09465	0.11	-0.9
2,133,226	-		DDA3937_RS09465	0.11	-2.3
2,133,226	-		DDA3937_RS09465	0.11	-1.0
2,133,226	-		DDA3937_RS09465	0.11	-1.3
2,133,226	-		DDA3937_RS09465	0.11	+0.4
2,133,226	-		DDA3937_RS09465	0.11	+0.5
2,133,226	-		DDA3937_RS09465	0.11	+0.8
2,133,228	-		DDA3937_RS09465	0.11	-1.7
2,133,287	+		DDA3937_RS09465	0.17	+4.7
2,133,311	+		DDA3937_RS09465	0.19	+0.1
2,133,311	+		DDA3937_RS09465	0.19	-1.2
2,133,312	-		DDA3937_RS09465	0.19	-1.6
2,133,432	-		DDA3937_RS09465	0.29	-1.2
2,133,508	+		DDA3937_RS09465	0.36	-0.8
2,133,508	+		DDA3937_RS09465	0.36	-1.6
2,133,509	-		DDA3937_RS09465	0.36	+4.6
2,133,509	-		DDA3937_RS09465	0.36	-1.0
2,133,659	+		DDA3937_RS09465	0.49	-0.7
2,133,810	+		DDA3937_RS09465	0.63	-0.1
2,133,810	+		DDA3937_RS09465	0.63	+0.5
2,133,811	-		DDA3937_RS09465	0.63	-0.2
2,133,860	+		DDA3937_RS09465	0.67	+0.4
2,133,860	+		DDA3937_RS09465	0.67	-0.3
2,133,860	+		DDA3937_RS09465	0.67	-1.3
2,133,861	-		DDA3937_RS09465	0.67	-2.0
2,133,861	-		DDA3937_RS09465	0.67	-0.0
2,133,941	+		DDA3937_RS09465	0.74	+2.1
2,133,979	-		DDA3937_RS09465	0.78	-1.5