Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08875

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,003,727	-		DDA3937_RS08870	0.34	+2.3
2,003,754	+		DDA3937_RS08870	0.36	-0.3
2,003,755	-		DDA3937_RS08870	0.37	-0.2
2,003,811	+		DDA3937_RS08870	0.42	+0.7
2,003,812	-		DDA3937_RS08870	0.42	+0.4
2,003,866	+		DDA3937_RS08870	0.48	-1.6
2,003,866	+		DDA3937_RS08870	0.48	+1.2
2,003,866	+		DDA3937_RS08870	0.48	-0.4
2,003,866	+		DDA3937_RS08870	0.48	+0.0
2,003,867	-		DDA3937_RS08870	0.48	+0.4
2,003,867	-		DDA3937_RS08870	0.48	-1.8
2,003,976	+		DDA3937_RS08870	0.58	-1.0
2,003,976	+		DDA3937_RS08870	0.58	-0.0
2,003,976	+		DDA3937_RS08870	0.58	+2.0
2,003,976	+		DDA3937_RS08870	0.58	-0.1
2,003,976	+		DDA3937_RS08870	0.58	-1.0
2,003,976	+		DDA3937_RS08870	0.58	+0.5
2,003,977	-		DDA3937_RS08870	0.59	-1.0
2,003,977	-		DDA3937_RS08870	0.59	-0.9
2,004,154	-		DDA3937_RS08870	0.76	+0.0
2,004,231	+		DDA3937_RS08870	0.84	+0.7
2,004,295	-				-0.3
2,004,400	-				-1.9
2,004,425	-				-0.6
2,004,425	-				-1.2
2,004,427	+				+0.4
2,004,427	+				-0.1
2,004,455	+				+0.2
2,004,539	-				-0.8
2,004,550	+				-0.1
2,004,550	+				+1.1
2,004,597	-				-1.9
2,004,626	+				+0.7
2,004,691	+				-0.0
2,004,691	+				+0.4
2,004,691	+				+0.2
2,004,691	+				-0.4
2,004,807	+				-0.4
2,004,807	+				-2.5
2,004,840	+		DDA3937_RS08875	0.12	-0.3
2,004,841	-		DDA3937_RS08875	0.12	+0.2
2,005,021	-		DDA3937_RS08875	0.26	-0.8
2,005,021	-		DDA3937_RS08875	0.26	+0.6
2,005,021	-		DDA3937_RS08875	0.26	-0.5
2,005,023	+		DDA3937_RS08875	0.26	+0.2
2,005,087	-		DDA3937_RS08875	0.31	-1.8
2,005,116	+		DDA3937_RS08875	0.33	-0.7
2,005,116	+		DDA3937_RS08875	0.33	-0.1
2,005,116	+		DDA3937_RS08875	0.33	-0.7
2,005,188	+		DDA3937_RS08875	0.39	-0.0
2,005,233	+		DDA3937_RS08875	0.42	-1.2
2,005,239	+		DDA3937_RS08875	0.43	-1.3
2,005,284	+		DDA3937_RS08875	0.46	+0.0
2,005,284	+		DDA3937_RS08875	0.46	-1.7
2,005,284	+		DDA3937_RS08875	0.46	+1.7
2,005,308	+		DDA3937_RS08875	0.48	-1.7
2,005,308	+		DDA3937_RS08875	0.48	+0.3
2,005,309	-				-0.2
2,005,309	-		DDA3937_RS08875	0.48	-0.4
2,005,311	+		DDA3937_RS08875	0.48	-0.2
2,005,311	+		DDA3937_RS08875	0.48	+0.0
2,005,311	+		DDA3937_RS08875	0.48	-1.2
2,005,311	+		DDA3937_RS08875	0.48	+4.5
2,005,311	+		DDA3937_RS08875	0.48	-1.3
2,005,312	-		DDA3937_RS08875	0.48	-1.0
2,005,312	-		DDA3937_RS08875	0.48	-1.0
2,005,312	-		DDA3937_RS08875	0.48	-0.3
2,005,331	-		DDA3937_RS08875	0.50	-1.2
2,005,331	-		DDA3937_RS08875	0.50	-0.2
2,005,337	+		DDA3937_RS08875	0.50	-1.2
2,005,338	-		DDA3937_RS08875	0.50	+0.0
2,005,338	-		DDA3937_RS08875	0.50	-0.6
2,005,338	-		DDA3937_RS08875	0.50	-0.1
2,005,338	-		DDA3937_RS08875	0.50	-1.0
2,005,338	-		DDA3937_RS08875	0.50	-1.0
2,005,415	+		DDA3937_RS08875	0.56	-1.2
2,005,416	-		DDA3937_RS08875	0.56	-1.0
2,005,434	+		DDA3937_RS08875	0.58	-0.1
2,005,454	+		DDA3937_RS08875	0.59	-0.9
2,005,454	+		DDA3937_RS08875	0.59	+2.8
2,005,454	+		DDA3937_RS08875	0.59	-0.9
2,005,454	+		DDA3937_RS08875	0.59	+0.3
2,005,454	+		DDA3937_RS08875	0.59	-1.0
2,005,454	+		DDA3937_RS08875	0.59	-0.7
2,005,455	-		DDA3937_RS08875	0.59	-1.0
2,005,455	-		DDA3937_RS08875	0.59	-0.3
2,005,455	-		DDA3937_RS08875	0.59	-0.8
2,005,586	+		DDA3937_RS08875	0.69	-0.1
2,005,586	+		DDA3937_RS08875	0.69	+1.2
2,005,586	+		DDA3937_RS08875	0.69	-1.4
2,005,586	+		DDA3937_RS08875	0.69	+0.2
2,005,586	+		DDA3937_RS08875	0.69	+0.2
2,005,586	+		DDA3937_RS08875	0.69	-0.2
2,005,587	-		DDA3937_RS08875	0.69	+0.3
2,005,587	-		DDA3937_RS08875	0.69	-2.6
2,005,587	-		DDA3937_RS08875	0.69	-1.4
2,005,587	-		DDA3937_RS08875	0.69	+0.4
2,005,587	-		DDA3937_RS08875	0.69	+0.9
2,005,587	-		DDA3937_RS08875	0.69	-1.2
2,005,587	-		DDA3937_RS08875	0.69	-0.6
2,005,587	-		DDA3937_RS08875	0.69	-0.4
2,005,587	-		DDA3937_RS08875	0.69	-0.8
2,005,587	-		DDA3937_RS08875	0.69	-1.2
2,005,587	-		DDA3937_RS08875	0.69	-0.6
2,005,589	+		DDA3937_RS08875	0.70	+0.5
2,005,639	-		DDA3937_RS08875	0.73	-0.2
2,005,685	+		DDA3937_RS08875	0.77	-1.8
2,005,685	+				+1.6
2,005,685	+		DDA3937_RS08875	0.77	+4.9
2,005,685	+		DDA3937_RS08875	0.77	+0.4
2,005,686	-		DDA3937_RS08875	0.77	-0.1
2,005,686	-		DDA3937_RS08875	0.77	+0.3
2,005,717	+		DDA3937_RS08875	0.79	-1.2
2,005,717	+		DDA3937_RS08875	0.79	+0.9
2,005,783	+		DDA3937_RS08875	0.85	-1.8
2,005,783	+		DDA3937_RS08875	0.85	-0.2
2,005,905	+				+5.2
2,005,906	-				+0.3
2,005,906	-				-0.4
2,005,969	+				+0.7
2,006,059	-				-0.4
2,006,059	-				+0.4
2,006,066	+				-0.7
2,006,066	+				+0.0
2,006,068	+				-1.2
2,006,069	-				+0.0
2,006,069	-				+3.0
2,006,177	-				-0.7
2,006,177	-				-0.5
2,006,177	-				-0.4
2,006,225	-		DDA3937_RS08880	0.15	-1.1
2,006,225	-		DDA3937_RS08880	0.15	-0.6
2,006,281	-		DDA3937_RS08880	0.26	-0.2
2,006,281	-		DDA3937_RS08880	0.26	+0.6
2,006,363	+		DDA3937_RS08880	0.43	-0.2
2,006,363	+		DDA3937_RS08880	0.43	-1.9
2,006,399	+		DDA3937_RS08880	0.50	+0.3
2,006,400	-		DDA3937_RS08880	0.50	-1.2
2,006,481	+		DDA3937_RS08880	0.67	+0.6
2,006,481	+		DDA3937_RS08880	0.67	+0.8
2,006,481	+		DDA3937_RS08880	0.67	-0.2
2,006,481	+		DDA3937_RS08880	0.67	-0.4
2,006,482	-		DDA3937_RS08880	0.67	-1.4
2,006,482	-		DDA3937_RS08880	0.67	-0.1
2,006,482	-		DDA3937_RS08880	0.67	+0.2
2,006,482	-		DDA3937_RS08880	0.67	-2.9
2,006,501	+		DDA3937_RS08880	0.71	-1.2
2,006,641	-				+1.8
2,006,656	-				-0.3
2,006,725	+				+0.6
2,006,761	+				-0.4
2,006,762	-				+0.4
2,006,794	+				+4.3
2,006,795	-				+0.3
2,006,795	-				-0.9
2,006,855	-				+1.8