Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS22055 and DDA3937_RS07775 are separated by 115 nucleotides DDA3937_RS07775 and DDA3937_RS07780 are separated by 69 nucleotides DDA3937_RS07780 and DDA3937_RS07785 are separated by 152 nucleotides DDA3937_RS07785 and DDA3937_RS07790 are separated by 185 nucleotides
DDA3937_RS22055: DDA3937_RS22055 - IS630 family transposase, at 1,756,481 to 1,757,100
_RS22055
DDA3937_RS07775: DDA3937_RS07775 - helix-turn-helix transcriptional regulator, at 1,757,216 to 1,757,782
_RS07775
DDA3937_RS07780: DDA3937_RS07780 - N-acetyltransferase, at 1,757,852 to 1,758,364
_RS07780
DDA3937_RS07785: DDA3937_RS07785 - OsmC family protein, at 1,758,517 to 1,758,897
_RS07785
DDA3937_RS07790: DDA3937_RS07790 - aminopeptidase P family protein, at 1,759,083 to 1,760,165
_RS07790
Position (kb) 1757
1758
1759 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1757.080 kb on + strand at 1757.089 kb on + strand at 1757.120 kb on + strand at 1757.121 kb on - strand at 1757.121 kb on - strand at 1757.172 kb on + strand at 1757.172 kb on + strand at 1757.172 kb on + strand at 1757.173 kb on - strand at 1757.181 kb on + strand at 1757.182 kb on - strand at 1757.182 kb on - strand at 1757.182 kb on - strand at 1757.182 kb on - strand at 1757.184 kb on + strand at 1757.185 kb on - strand at 1757.201 kb on + strand at 1757.201 kb on + strand at 1757.205 kb on - strand at 1757.205 kb on - strand at 1757.205 kb on - strand at 1757.205 kb on - strand at 1757.205 kb on - strand at 1757.207 kb on - strand at 1757.207 kb on - strand at 1757.207 kb on - strand at 1757.207 kb on - strand at 1757.230 kb on + strand at 1757.230 kb on + strand at 1757.230 kb on + strand at 1757.230 kb on + strand at 1757.231 kb on - strand at 1757.246 kb on - strand at 1757.257 kb on + strand at 1757.258 kb on - strand at 1757.258 kb on - strand at 1757.279 kb on - strand, within DDA3937_RS07775 at 1757.279 kb on - strand, within DDA3937_RS07775 at 1757.293 kb on + strand, within DDA3937_RS07775 at 1757.330 kb on - strand, within DDA3937_RS07775 at 1757.410 kb on + strand, within DDA3937_RS07775 at 1757.410 kb on + strand, within DDA3937_RS07775 at 1757.411 kb on - strand, within DDA3937_RS07775 at 1757.411 kb on - strand, within DDA3937_RS07775 at 1757.411 kb on - strand, within DDA3937_RS07775 at 1757.411 kb on - strand, within DDA3937_RS07775 at 1757.505 kb on + strand, within DDA3937_RS07775 at 1757.505 kb on + strand, within DDA3937_RS07775 at 1757.505 kb on + strand, within DDA3937_RS07775 at 1757.505 kb on + strand, within DDA3937_RS07775 at 1757.505 kb on + strand, within DDA3937_RS07775 at 1757.505 kb on + strand, within DDA3937_RS07775 at 1757.505 kb on + strand, within DDA3937_RS07775 at 1757.505 kb on + strand, within DDA3937_RS07775 at 1757.505 kb on + strand, within DDA3937_RS07775 at 1757.505 kb on + strand, within DDA3937_RS07775 at 1757.505 kb on + strand, within DDA3937_RS07775 at 1757.505 kb on + strand, within DDA3937_RS07775 at 1757.505 kb on + strand, within DDA3937_RS07775 at 1757.505 kb on + strand, within DDA3937_RS07775 at 1757.505 kb on + strand, within DDA3937_RS07775 at 1757.505 kb on + strand, within DDA3937_RS07775 at 1757.506 kb on - strand, within DDA3937_RS07775 at 1757.506 kb on - strand, within DDA3937_RS07775 at 1757.506 kb on - strand, within DDA3937_RS07775 at 1757.506 kb on - strand, within DDA3937_RS07775 at 1757.506 kb on - strand, within DDA3937_RS07775 at 1757.507 kb on - strand, within DDA3937_RS07775 at 1757.554 kb on + strand, within DDA3937_RS07775 at 1757.555 kb on - strand, within DDA3937_RS07775 at 1757.555 kb on - strand, within DDA3937_RS07775 at 1757.555 kb on - strand, within DDA3937_RS07775 at 1757.562 kb on + strand, within DDA3937_RS07775 at 1757.563 kb on - strand, within DDA3937_RS07775 at 1757.600 kb on + strand at 1757.600 kb on + strand, within DDA3937_RS07775 at 1757.601 kb on - strand, within DDA3937_RS07775 at 1757.725 kb on + strand, within DDA3937_RS07775 at 1757.753 kb on + strand at 1757.753 kb on + strand at 1757.754 kb on - strand at 1757.754 kb on - strand at 1757.829 kb on + strand at 1757.830 kb on - strand at 1757.903 kb on + strand at 1757.903 kb on + strand at 1757.903 kb on + strand at 1757.903 kb on + strand at 1757.904 kb on - strand, within DDA3937_RS07780 at 1757.904 kb on - strand, within DDA3937_RS07780 at 1757.904 kb on - strand, within DDA3937_RS07780 at 1757.904 kb on - strand, within DDA3937_RS07780 at 1757.920 kb on - strand, within DDA3937_RS07780 at 1757.920 kb on - strand, within DDA3937_RS07780 at 1757.920 kb on - strand, within DDA3937_RS07780 at 1758.047 kb on + strand, within DDA3937_RS07780 at 1758.091 kb on + strand, within DDA3937_RS07780 at 1758.091 kb on + strand, within DDA3937_RS07780 at 1758.091 kb on + strand, within DDA3937_RS07780 at 1758.091 kb on + strand, within DDA3937_RS07780 at 1758.092 kb on - strand at 1758.092 kb on - strand at 1758.092 kb on - strand, within DDA3937_RS07780 at 1758.110 kb on + strand, within DDA3937_RS07780 at 1758.111 kb on - strand, within DDA3937_RS07780 at 1758.111 kb on - strand, within DDA3937_RS07780 at 1758.111 kb on - strand, within DDA3937_RS07780 at 1758.139 kb on + strand, within DDA3937_RS07780 at 1758.199 kb on + strand, within DDA3937_RS07780 at 1758.199 kb on + strand, within DDA3937_RS07780 at 1758.199 kb on + strand, within DDA3937_RS07780 at 1758.200 kb on - strand, within DDA3937_RS07780 at 1758.200 kb on - strand, within DDA3937_RS07780 at 1758.200 kb on - strand, within DDA3937_RS07780 at 1758.200 kb on - strand, within DDA3937_RS07780 at 1758.200 kb on - strand, within DDA3937_RS07780 at 1758.391 kb on + strand at 1758.391 kb on + strand at 1758.392 kb on - strand at 1758.392 kb on - strand at 1758.393 kb on + strand at 1758.393 kb on + strand at 1758.393 kb on + strand at 1758.393 kb on + strand at 1758.394 kb on - strand at 1758.394 kb on - strand at 1758.394 kb on - strand at 1758.394 kb on - strand at 1758.394 kb on - strand at 1758.394 kb on - strand at 1758.394 kb on - strand at 1758.496 kb on - strand at 1758.496 kb on - strand at 1758.496 kb on - strand at 1758.496 kb on - strand at 1758.507 kb on + strand at 1758.507 kb on + strand at 1758.508 kb on - strand at 1758.521 kb on + strand at 1758.522 kb on - strand at 1758.710 kb on + strand, within DDA3937_RS07785 at 1758.725 kb on + strand at 1758.726 kb on - strand, within DDA3937_RS07785 at 1758.726 kb on - strand, within DDA3937_RS07785 at 1759.012 kb on + strand at 1759.012 kb on + strand at 1759.012 kb on + strand at 1759.013 kb on - strand at 1759.013 kb on - strand at 1759.013 kb on - strand at 1759.154 kb on + strand at 1759.199 kb on + strand, within DDA3937_RS07790
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,757,080 + +0.4 1,757,089 + -0.0 1,757,120 + -1.1 1,757,121 - +0.0 1,757,121 - -0.2 1,757,172 + -0.6 1,757,172 + +0.3 1,757,172 + -0.6 1,757,173 - -0.1 1,757,181 + -0.9 1,757,182 - -1.4 1,757,182 - +0.3 1,757,182 - -2.1 1,757,182 - -0.8 1,757,184 + +0.0 1,757,185 - -1.4 1,757,201 + +1.5 1,757,201 + -1.6 1,757,205 - +0.4 1,757,205 - -0.1 1,757,205 - -1.0 1,757,205 - +2.4 1,757,205 - +0.1 1,757,207 - -2.0 1,757,207 - +0.1 1,757,207 - -1.3 1,757,207 - +1.1 1,757,230 + -1.5 1,757,230 + -2.1 1,757,230 + -0.9 1,757,230 + -1.2 1,757,231 - +1.2 1,757,246 - -2.1 1,757,257 + -1.1 1,757,258 - +0.2 1,757,258 - -1.4 1,757,279 - DDA3937_RS07775 0.11 +0.6 1,757,279 - DDA3937_RS07775 0.11 -1.1 1,757,293 + DDA3937_RS07775 0.14 -2.6 1,757,330 - DDA3937_RS07775 0.20 -0.3 1,757,410 + DDA3937_RS07775 0.34 -0.6 1,757,410 + DDA3937_RS07775 0.34 +0.8 1,757,411 - DDA3937_RS07775 0.34 -0.5 1,757,411 - DDA3937_RS07775 0.34 -1.3 1,757,411 - DDA3937_RS07775 0.34 -0.0 1,757,411 - DDA3937_RS07775 0.34 -0.2 1,757,505 + DDA3937_RS07775 0.51 -0.8 1,757,505 + DDA3937_RS07775 0.51 -0.3 1,757,505 + DDA3937_RS07775 0.51 +0.9 1,757,505 + DDA3937_RS07775 0.51 -2.9 1,757,505 + DDA3937_RS07775 0.51 -0.5 1,757,505 + DDA3937_RS07775 0.51 -0.1 1,757,505 + DDA3937_RS07775 0.51 -1.5 1,757,505 + DDA3937_RS07775 0.51 -0.2 1,757,505 + DDA3937_RS07775 0.51 +0.8 1,757,505 + DDA3937_RS07775 0.51 -0.1 1,757,505 + DDA3937_RS07775 0.51 -1.6 1,757,505 + DDA3937_RS07775 0.51 -0.7 1,757,505 + DDA3937_RS07775 0.51 -0.4 1,757,505 + DDA3937_RS07775 0.51 -1.0 1,757,505 + DDA3937_RS07775 0.51 -1.0 1,757,505 + DDA3937_RS07775 0.51 +0.9 1,757,506 - DDA3937_RS07775 0.51 +0.2 1,757,506 - DDA3937_RS07775 0.51 -0.1 1,757,506 - DDA3937_RS07775 0.51 +0.3 1,757,506 - DDA3937_RS07775 0.51 -0.6 1,757,506 - DDA3937_RS07775 0.51 +0.3 1,757,507 - DDA3937_RS07775 0.51 -0.6 1,757,554 + DDA3937_RS07775 0.60 +0.7 1,757,555 - DDA3937_RS07775 0.60 -1.0 1,757,555 - DDA3937_RS07775 0.60 -0.4 1,757,555 - DDA3937_RS07775 0.60 -1.1 1,757,562 + DDA3937_RS07775 0.61 -2.1 1,757,563 - DDA3937_RS07775 0.61 -0.5 1,757,600 + -0.8 1,757,600 + DDA3937_RS07775 0.68 +0.8 1,757,601 - DDA3937_RS07775 0.68 -2.1 1,757,725 + DDA3937_RS07775 0.90 -0.7 1,757,753 + +0.8 1,757,753 + +0.2 1,757,754 - -1.1 1,757,754 - +0.1 1,757,829 + +0.5 1,757,830 - -2.5 1,757,903 + -0.9 1,757,903 + -0.2 1,757,903 + -0.1 1,757,903 + -1.4 1,757,904 - DDA3937_RS07780 0.10 -1.2 1,757,904 - DDA3937_RS07780 0.10 -0.4 1,757,904 - DDA3937_RS07780 0.10 +1.5 1,757,904 - DDA3937_RS07780 0.10 -0.8 1,757,920 - DDA3937_RS07780 0.13 -1.3 1,757,920 - DDA3937_RS07780 0.13 +0.2 1,757,920 - DDA3937_RS07780 0.13 -1.1 1,758,047 + DDA3937_RS07780 0.38 +0.2 1,758,091 + DDA3937_RS07780 0.47 +0.4 1,758,091 + DDA3937_RS07780 0.47 +1.2 1,758,091 + DDA3937_RS07780 0.47 -0.1 1,758,091 + DDA3937_RS07780 0.47 +0.1 1,758,092 - -0.4 1,758,092 - -0.4 1,758,092 - DDA3937_RS07780 0.47 -0.1 1,758,110 + DDA3937_RS07780 0.50 +0.6 1,758,111 - DDA3937_RS07780 0.50 +0.0 1,758,111 - DDA3937_RS07780 0.50 -1.1 1,758,111 - DDA3937_RS07780 0.50 -0.6 1,758,139 + DDA3937_RS07780 0.56 -1.6 1,758,199 + DDA3937_RS07780 0.68 +0.0 1,758,199 + DDA3937_RS07780 0.68 +0.2 1,758,199 + DDA3937_RS07780 0.68 -0.3 1,758,200 - DDA3937_RS07780 0.68 +0.8 1,758,200 - DDA3937_RS07780 0.68 -1.1 1,758,200 - DDA3937_RS07780 0.68 -0.2 1,758,200 - DDA3937_RS07780 0.68 -1.1 1,758,200 - DDA3937_RS07780 0.68 -0.7 1,758,391 + -1.1 1,758,391 + -1.5 1,758,392 - -0.1 1,758,392 - -1.1 1,758,393 + +0.2 1,758,393 + -1.1 1,758,393 + +1.4 1,758,393 + -0.2 1,758,394 - -1.4 1,758,394 - -0.1 1,758,394 - -0.9 1,758,394 - +0.6 1,758,394 - -0.1 1,758,394 - -1.0 1,758,394 - -2.1 1,758,496 - -1.6 1,758,496 - -0.8 1,758,496 - -0.1 1,758,496 - -0.6 1,758,507 + +0.1 1,758,507 + +0.8 1,758,508 - -1.1 1,758,521 + -0.3 1,758,522 - -1.4 1,758,710 + DDA3937_RS07785 0.51 +1.0 1,758,725 + -0.4 1,758,726 - DDA3937_RS07785 0.55 +1.8 1,758,726 - DDA3937_RS07785 0.55 -2.1 1,759,012 + -1.1 1,759,012 + -0.0 1,759,012 + +1.2 1,759,013 - -1.1 1,759,013 - +0.3 1,759,013 - -0.3 1,759,154 + +1.4 1,759,199 + DDA3937_RS07790 0.11 -0.4
Or see this region's nucleotide sequence