Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07450

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,680,084	+		DDA3937_RS07445	0.43	-0.4
1,680,085	-		DDA3937_RS07445	0.43	+0.5
1,680,250	+		DDA3937_RS07445	0.52	-0.6
1,680,303	+		DDA3937_RS07445	0.55	-0.7
1,680,369	+		DDA3937_RS07445	0.59	+0.2
1,680,369	+		DDA3937_RS07445	0.59	-0.9
1,680,370	-		DDA3937_RS07445	0.59	-1.8
1,680,370	-		DDA3937_RS07445	0.59	+0.4
1,680,414	+		DDA3937_RS07445	0.62	+1.8
1,680,415	-		DDA3937_RS07445	0.62	+1.2
1,680,415	-		DDA3937_RS07445	0.62	+0.7
1,680,415	-		DDA3937_RS07445	0.62	-1.8
1,680,552	+		DDA3937_RS07445	0.70	-0.4
1,680,553	-		DDA3937_RS07445	0.70	-0.7
1,680,553	-		DDA3937_RS07445	0.70	+1.0
1,680,553	-		DDA3937_RS07445	0.70	+0.6
1,680,618	+				+0.8
1,680,690	+		DDA3937_RS07445	0.78	-0.4
1,680,690	+		DDA3937_RS07445	0.78	-0.1
1,680,690	+		DDA3937_RS07445	0.78	-0.9
1,680,691	-		DDA3937_RS07445	0.78	+0.0
1,680,691	-		DDA3937_RS07445	0.78	-0.1
1,680,828	+		DDA3937_RS07445	0.86	+0.9
1,680,828	+		DDA3937_RS07445	0.86	+0.2
1,680,828	+		DDA3937_RS07445	0.86	-1.4
1,680,828	+		DDA3937_RS07445	0.86	-1.6
1,680,828	+		DDA3937_RS07445	0.86	-0.2
1,680,828	+		DDA3937_RS07445	0.86	-1.3
1,680,828	+		DDA3937_RS07445	0.86	-0.6
1,680,828	+		DDA3937_RS07445	0.86	+0.3
1,680,828	+		DDA3937_RS07445	0.86	-1.3
1,680,829	-		DDA3937_RS07445	0.86	-0.5
1,680,829	-		DDA3937_RS07445	0.86	+0.2
1,680,829	-		DDA3937_RS07445	0.86	+0.2
1,680,829	-		DDA3937_RS07445	0.86	+0.4
1,680,829	-		DDA3937_RS07445	0.86	-1.2
1,680,829	-		DDA3937_RS07445	0.86	-0.6
1,680,831	+		DDA3937_RS07445	0.86	+0.2
1,680,831	+		DDA3937_RS07445	0.86	-2.2
1,680,831	+		DDA3937_RS07445	0.86	-1.5
1,680,832	-		DDA3937_RS07445	0.86	-0.4
1,680,832	-		DDA3937_RS07445	0.86	+0.6
1,680,832	-		DDA3937_RS07445	0.86	-1.0
1,680,875	+		DDA3937_RS07445	0.88	-1.9
1,680,878	+		DDA3937_RS07445	0.89	-0.4
1,680,879	-		DDA3937_RS07445	0.89	+1.0
1,680,904	-				-0.9
1,680,904	-				-1.6
1,680,904	-				-1.4
1,680,904	-				-0.4
1,680,904	-				-0.1
1,680,906	+				-1.1
1,680,906	+				-0.0
1,680,906	+				+0.7
1,680,906	+				-0.7
1,680,907	-				-0.8
1,680,907	-				-1.9
1,681,026	+				+0.0
1,681,026	+				-1.4
1,681,026	+				-3.3
1,681,069	+				+0.1
1,681,069	+				+0.5
1,681,078	+				+0.4
1,681,078	+				-1.5
1,681,078	+				-0.1
1,681,078	+				-2.4
1,681,079	-				+0.2
1,681,079	-				-2.0
1,681,134	-				-0.4
1,681,134	-				-0.5
1,681,136	+				-1.1
1,681,148	+				+0.7
1,681,148	+				+0.5
1,681,148	+				-0.7
1,681,148	+				-2.1
1,681,149	-				-1.1
1,681,151	+				-0.6
1,681,151	+				-1.9
1,681,152	-				-0.8
1,681,152	-				-0.4
1,681,157	+				+0.7
1,681,157	+				+0.9
1,681,157	+				-0.3
1,681,163	+				-0.1
1,681,163	+				-1.5
1,681,164	-				-1.0
1,681,164	-				-1.4
1,681,164	-				-0.6
1,681,166	+				-0.6
1,681,166	+				+0.6
1,681,167	-				+1.1
1,681,193	+				-0.4
1,681,193	+				+0.1
1,681,193	+				-0.0
1,681,193	+				-0.5
1,681,193	+				-0.6
1,681,197	-				-1.9
1,681,197	-				+0.1
1,681,310	+		DDA3937_RS07450	0.14	-0.7
1,681,335	+		DDA3937_RS07450	0.16	-1.1
1,681,488	+		DDA3937_RS07450	0.25	+1.2
1,681,488	+		DDA3937_RS07450	0.25	+0.6
1,681,489	-		DDA3937_RS07450	0.25	-0.8
1,681,539	+		DDA3937_RS07450	0.28	-0.0
1,681,637	+		DDA3937_RS07450	0.34	+0.0
1,681,651	+		DDA3937_RS07450	0.35	-0.8
1,681,652	-		DDA3937_RS07450	0.35	-0.6
1,681,715	+		DDA3937_RS07450	0.39	-0.6
1,681,715	+		DDA3937_RS07450	0.39	+0.4
1,681,716	-		DDA3937_RS07450	0.39	-0.2
1,681,716	-		DDA3937_RS07450	0.39	-1.0
1,681,716	-		DDA3937_RS07450	0.39	-0.9
1,681,716	-		DDA3937_RS07450	0.39	-1.4
1,681,716	-		DDA3937_RS07450	0.39	+2.5
1,681,716	-		DDA3937_RS07450	0.39	-0.6
1,681,930	+		DDA3937_RS07450	0.51	-2.4
1,681,931	-		DDA3937_RS07450	0.51	-0.2
1,681,931	-		DDA3937_RS07450	0.51	-1.2
1,681,931	-		DDA3937_RS07450	0.51	-1.9
1,682,185	+		DDA3937_RS07450	0.67	-0.6
1,682,185	+		DDA3937_RS07450	0.67	-0.1
1,682,194	-		DDA3937_RS07450	0.67	+0.0
1,682,242	+		DDA3937_RS07450	0.70	-0.6
1,682,242	+		DDA3937_RS07450	0.70	-0.0
1,682,242	+		DDA3937_RS07450	0.70	+0.6
1,682,242	+		DDA3937_RS07450	0.70	-0.1
1,682,242	+				+2.5
1,682,243	-		DDA3937_RS07450	0.70	+0.5
1,682,243	-		DDA3937_RS07450	0.70	+0.2
1,682,243	-		DDA3937_RS07450	0.70	-0.2
1,682,243	-		DDA3937_RS07450	0.70	-1.6
1,682,243	-		DDA3937_RS07450	0.70	-0.9
1,682,399	-		DDA3937_RS07450	0.79	-0.4
1,682,401	+		DDA3937_RS07450	0.79	-1.3
1,682,401	+		DDA3937_RS07450	0.79	-0.2
1,682,401	+		DDA3937_RS07450	0.79	-1.9
1,682,402	-		DDA3937_RS07450	0.80	-0.4
1,682,453	+		DDA3937_RS07450	0.83	-0.8
1,682,453	+		DDA3937_RS07450	0.83	-2.5
1,682,453	+		DDA3937_RS07450	0.83	+0.2
1,682,454	-		DDA3937_RS07450	0.83	-0.6
1,682,454	-		DDA3937_RS07450	0.83	-2.7
1,682,454	-		DDA3937_RS07450	0.83	+0.5
1,682,455	+		DDA3937_RS07450	0.83	-1.1
1,682,455	+		DDA3937_RS07450	0.83	-0.4
1,682,455	+		DDA3937_RS07450	0.83	+1.2
1,682,456	-		DDA3937_RS07450	0.83	-1.0
1,682,456	-		DDA3937_RS07450	0.83	-0.2
1,682,456	-		DDA3937_RS07450	0.83	-1.3
1,682,456	-		DDA3937_RS07450	0.83	-0.6
1,682,456	-		DDA3937_RS07450	0.83	-0.3
1,682,572	+		DDA3937_RS07450	0.90	-0.6
1,682,572	+				-1.6
1,682,573	-		DDA3937_RS07450	0.90	-0.4
1,682,573	-				-0.8
1,683,073	-		DDA3937_RS07455	0.50	+1.9
1,683,073	-		DDA3937_RS07455	0.50	+0.2
1,683,176	-		DDA3937_RS07455	0.65	-1.8
1,683,176	-		DDA3937_RS07455	0.65	+0.6
1,683,176	-		DDA3937_RS07455	0.65	-0.7
1,683,176	-		DDA3937_RS07455	0.65	-0.6
1,683,194	+		DDA3937_RS07455	0.68	-1.2
1,683,195	-		DDA3937_RS07455	0.68	-0.7
1,683,195	-		DDA3937_RS07455	0.68	-0.3
1,683,195	-				+0.2
1,683,195	-		DDA3937_RS07455	0.68	-1.3
1,683,228	+		DDA3937_RS07455	0.73	-0.3
1,683,228	+		DDA3937_RS07455	0.73	-1.4
1,683,228	+		DDA3937_RS07455	0.73	-1.7
1,683,228	+		DDA3937_RS07455	0.73	-0.3
1,683,228	+		DDA3937_RS07455	0.73	-0.8
1,683,229	-		DDA3937_RS07455	0.74	+0.1
1,683,229	-		DDA3937_RS07455	0.74	-0.1
1,683,300	+		DDA3937_RS07455	0.84	-0.0
1,683,300	+		DDA3937_RS07455	0.84	-2.5
1,683,411	+				+1.3
1,683,412	-				-0.1
1,683,412	-				-0.5
1,683,458	+				-0.5
1,683,458	+				-0.2
1,683,668	-		DDA3937_RS07460	0.18	-1.4
1,683,693	-		DDA3937_RS07460	0.20	+0.4