Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07050

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,580,334	-		DDA3937_RS07040	0.70	+0.8
1,580,334	-		DDA3937_RS07040	0.70	-1.4
1,580,334	-		DDA3937_RS07040	0.70	+0.3
1,580,369	-		DDA3937_RS07040	0.73	-2.0
1,580,369	-		DDA3937_RS07040	0.73	-0.2
1,580,423	-		DDA3937_RS07040	0.77	-0.8
1,580,525	+		DDA3937_RS07040	0.86	-1.3
1,580,579	+				+0.6
1,580,579	+				+0.2
1,580,579	+				+2.5
1,580,579	+				-0.3
1,580,580	-				-1.5
1,580,580	-				-1.1
1,580,588	+				+1.2
1,580,589	-				+0.0
1,580,589	-				-0.6
1,580,589	-				+0.0
1,580,649	-				+1.1
1,580,660	+				+1.1
1,580,660	+				-1.2
1,580,660	+				+0.3
1,580,661	-				-0.1
1,580,697	-				-0.9
1,580,697	-				-0.2
1,580,697	-				-0.3
1,580,697	-				-0.9
1,580,697	-				-1.5
1,580,806	-		DDA3937_RS07045	0.20	-0.5
1,580,969	+		DDA3937_RS07045	0.50	-1.4
1,581,005	-		DDA3937_RS07045	0.57	+2.1
1,581,005	-		DDA3937_RS07045	0.57	-1.4
1,581,005	-		DDA3937_RS07045	0.57	-1.2
1,581,022	+		DDA3937_RS07045	0.60	+0.3
1,581,022	+		DDA3937_RS07045	0.60	+0.1
1,581,023	-		DDA3937_RS07045	0.61	-0.8
1,581,023	-		DDA3937_RS07045	0.61	-0.5
1,581,049	+		DDA3937_RS07045	0.65	-0.2
1,581,050	-		DDA3937_RS07045	0.66	-1.4
1,581,050	-		DDA3937_RS07045	0.66	-1.1
1,581,085	+		DDA3937_RS07045	0.72	+0.5
1,581,085	+		DDA3937_RS07045	0.72	-0.5
1,581,085	+		DDA3937_RS07045	0.72	+1.0
1,581,085	+				+2.3
1,581,085	+		DDA3937_RS07045	0.72	+0.4
1,581,086	-		DDA3937_RS07045	0.72	-0.3
1,581,086	-		DDA3937_RS07045	0.72	-0.7
1,581,106	+		DDA3937_RS07045	0.76	-1.3
1,581,107	-		DDA3937_RS07045	0.76	-0.1
1,581,169	+		DDA3937_RS07045	0.88	-0.0
1,581,169	+		DDA3937_RS07045	0.88	-2.9
1,581,170	-		DDA3937_RS07045	0.88	-1.6
1,581,232	+				-0.9
1,581,232	+				+1.3
1,581,233	-				-0.9
1,581,233	-				-1.0
1,581,233	-				-0.3
1,581,233	-				+2.1
1,581,236	+				+0.7
1,581,236	+				-0.5
1,581,236	+				-0.1
1,581,236	+				-2.5
1,581,237	-				+0.1
1,581,237	-				-0.7
1,581,257	+				-0.5
1,581,258	-				+0.7
1,581,321	+				-1.0
1,581,322	-				-1.7
1,581,396	+		DDA3937_RS07050	0.12	-0.1
1,581,397	-		DDA3937_RS07050	0.12	-1.9
1,581,397	-		DDA3937_RS07050	0.12	-1.5
1,581,397	-		DDA3937_RS07050	0.12	+0.5
1,581,397	-		DDA3937_RS07050	0.12	-0.9
1,581,457	+		DDA3937_RS07050	0.16	-1.1
1,581,535	-		DDA3937_RS07050	0.22	-0.5
1,581,535	-		DDA3937_RS07050	0.22	-1.5
1,581,535	-		DDA3937_RS07050	0.22	-0.9
1,581,723	+		DDA3937_RS07050	0.36	-0.7
1,581,724	-		DDA3937_RS07050	0.36	-0.9
1,582,001	+		DDA3937_RS07050	0.57	-0.8
1,582,001	+		DDA3937_RS07050	0.57	-0.3
1,582,002	-		DDA3937_RS07050	0.57	-1.2
1,582,065	-		DDA3937_RS07050	0.62	-0.6
1,582,449	+				-0.4
1,582,449	+				-1.5
1,582,449	+				-0.2
1,582,449	+				+0.5
1,582,449	+				+0.2
1,582,450	-				-1.0
1,582,450	-				-1.0
1,582,572	+				-0.1
1,582,572	+				-0.3
1,582,572	+				+0.2
1,582,572	+				+2.6
1,582,572	+				+1.3
1,582,572	+				+0.3
1,582,573	-				-0.4
1,582,577	-				-1.3
1,582,577	-				-0.3
1,582,577	-				+0.4
1,582,596	+				+1.9
1,582,596	+				+1.1
1,582,596	+				-1.1
1,582,596	+				+2.3
1,582,596	+				-1.3
1,582,597	-				-1.5
1,582,637	-				-1.1
1,582,637	-				-0.8
1,582,673	-		DDA3937_RS07055	0.11	-1.0
1,582,787	+		DDA3937_RS07055	0.25	+0.2
1,582,787	+		DDA3937_RS07055	0.25	-0.3
1,582,787	+		DDA3937_RS07055	0.25	+0.3
1,582,787	+		DDA3937_RS07055	0.25	-0.1
1,582,787	+		DDA3937_RS07055	0.25	-0.7
1,582,787	+		DDA3937_RS07055	0.25	+0.3
1,582,787	+		DDA3937_RS07055	0.25	-0.9
1,582,787	+		DDA3937_RS07055	0.25	-0.8
1,582,787	+		DDA3937_RS07055	0.25	-1.4
1,582,787	+		DDA3937_RS07055	0.25	-0.1
1,582,788	-		DDA3937_RS07055	0.25	-0.7
1,582,788	-		DDA3937_RS07055	0.25	+0.2
1,582,788	-		DDA3937_RS07055	0.25	-1.1
1,582,788	-		DDA3937_RS07055	0.25	-1.1
1,582,788	-		DDA3937_RS07055	0.25	+2.4
1,582,788	-		DDA3937_RS07055	0.25	-0.3
1,582,788	-		DDA3937_RS07055	0.25	-1.2
1,582,789	+		DDA3937_RS07055	0.25	+1.2
1,582,789	+		DDA3937_RS07055	0.25	+0.7
1,582,789	+		DDA3937_RS07055	0.25	+0.5
1,582,789	+		DDA3937_RS07055	0.25	-0.5
1,582,789	+		DDA3937_RS07055	0.25	+0.5
1,582,790	-		DDA3937_RS07055	0.26	-1.1
1,582,790	-		DDA3937_RS07055	0.26	-0.8
1,582,876	+		DDA3937_RS07055	0.37	+0.3
1,582,876	+		DDA3937_RS07055	0.37	-0.7
1,582,876	+		DDA3937_RS07055	0.37	-0.1
1,582,876	+		DDA3937_RS07055	0.37	+2.6
1,582,877	-		DDA3937_RS07055	0.37	-1.1
1,583,058	+		DDA3937_RS07055	0.60	-0.2
1,583,059	-		DDA3937_RS07055	0.60	-0.1
1,583,059	-		DDA3937_RS07055	0.60	+0.1
1,583,062	+		DDA3937_RS07055	0.61	+0.4
1,583,062	+		DDA3937_RS07055	0.61	-0.0
1,583,062	+		DDA3937_RS07055	0.61	+0.1
1,583,063	-		DDA3937_RS07055	0.61	-0.6
1,583,063	-		DDA3937_RS07055	0.61	+0.2
1,583,303	-				-0.8
1,583,303	-				+0.4
1,583,308	+				-0.4
1,583,308	+				-2.0
1,583,357	+				-1.4
1,583,357	+				+0.8
1,583,358	-				+0.0
1,583,358	-				-0.0
1,583,360	+				+0.1
1,583,360	+				+0.1
1,583,360	+				+0.0
1,583,361	-				-0.7
1,583,361	-				+0.2
1,583,365	+				-0.9
1,583,366	-				-0.9
1,583,366	-				-1.3
1,583,366	-				-0.4
1,583,376	+				+3.3
1,583,376	+				+0.5
1,583,376	+				-0.9
1,583,377	-				+0.5
1,583,377	-				+1.4
1,583,377	-				+2.3