Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06450

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,438,413	+				-0.1
1,438,414	-				+0.4
1,438,414	-				-0.9
1,438,436	-				-0.2
1,438,472	+				+1.3
1,438,472	+				-0.1
1,438,473	-				+0.1
1,438,473	-				+0.2
1,438,483	+				-0.9
1,438,483	+				+1.1
1,438,483	+				+0.1
1,438,483	+				-0.1
1,438,483	+				-0.3
1,438,483	+				+0.6
1,438,484	-				+1.2
1,438,484	-				+1.9
1,438,484	-				+1.3
1,438,486	+				-0.9
1,438,487	-				-0.4
1,438,503	+				+0.1
1,438,503	+				+0.4
1,438,503	+				+0.8
1,438,503	+				+0.3
1,438,503	+				+2.7
1,438,503	+				-0.1
1,438,504	-				-1.5
1,438,504	-				-0.0
1,438,504	-				+1.4
1,438,504	-				+0.6
1,438,504	-				+0.1
1,438,504	-				+0.3
1,438,505	+				+0.7
1,438,528	-				+1.2
1,438,538	-				-0.6
1,438,538	-				+0.1
1,438,581	+				+0.6
1,438,760	+		DDA3937_RS06440	0.21	+0.4
1,438,761	-		DDA3937_RS06440	0.21	-0.1
1,438,761	-		DDA3937_RS06440	0.21	-0.0
1,438,787	+		DDA3937_RS06440	0.27	+3.0
1,438,787	+		DDA3937_RS06440	0.27	+0.9
1,438,787	+		DDA3937_RS06440	0.27	+1.5
1,438,788	-		DDA3937_RS06440	0.28	+1.4
1,438,788	-		DDA3937_RS06440	0.28	+0.1
1,438,788	-		DDA3937_RS06440	0.28	-0.2
1,438,788	-		DDA3937_RS06440	0.28	-0.6
1,438,806	-		DDA3937_RS06440	0.32	-1.4
1,438,926	+		DDA3937_RS06440	0.63	+0.8
1,438,931	+		DDA3937_RS06440	0.64	-0.4
1,438,931	+		DDA3937_RS06440	0.64	+0.8
1,438,931	+		DDA3937_RS06440	0.64	+0.3
1,438,931	+		DDA3937_RS06440	0.64	-1.2
1,438,931	+		DDA3937_RS06440	0.64	-0.1
1,438,931	+		DDA3937_RS06440	0.64	-1.1
1,438,931	+		DDA3937_RS06440	0.64	+0.8
1,438,931	+		DDA3937_RS06440	0.64	-0.9
1,438,931	+		DDA3937_RS06440	0.64	-1.5
1,438,931	+		DDA3937_RS06440	0.64	-0.9
1,438,931	+		DDA3937_RS06440	0.64	+0.3
1,438,931	+				-0.2
1,438,931	+		DDA3937_RS06440	0.64	+0.4
1,438,931	+		DDA3937_RS06440	0.64	+1.0
1,438,931	+		DDA3937_RS06440	0.64	-1.3
1,438,931	+		DDA3937_RS06440	0.64	+2.5
1,438,932	-		DDA3937_RS06440	0.65	+1.5
1,438,932	-		DDA3937_RS06440	0.65	-0.2
1,438,932	-		DDA3937_RS06440	0.65	-1.4
1,438,932	-		DDA3937_RS06440	0.65	-1.4
1,438,936	+		DDA3937_RS06440	0.66	-0.6
1,438,936	+		DDA3937_RS06440	0.66	-1.6
1,438,936	+		DDA3937_RS06440	0.66	+0.0
1,438,937	-		DDA3937_RS06440	0.66	+0.9
1,438,937	-		DDA3937_RS06440	0.66	+0.8
1,438,971	+		DDA3937_RS06440	0.75	-0.4
1,439,024	+		DDA3937_RS06440	0.88	+0.0
1,439,025	-		DDA3937_RS06440	0.88	-0.4
1,439,025	-		DDA3937_RS06440	0.88	+3.0
1,439,025	-		DDA3937_RS06440	0.88	-1.4
1,439,027	+		DDA3937_RS06440	0.89	+0.3
1,439,027	+		DDA3937_RS06440	0.89	+0.3
1,439,027	+		DDA3937_RS06440	0.89	+0.7
1,439,027	+		DDA3937_RS06440	0.89	+0.4
1,439,027	+		DDA3937_RS06440	0.89	+0.5
1,439,028	-		DDA3937_RS06440	0.89	-0.6
1,439,062	+				+1.6
1,439,063	-				+1.0
1,439,067	+				+0.6
1,439,067	+				-0.4
1,439,067	+				-0.9
1,439,067	+				+0.1
1,439,068	-				-1.3
1,439,068	-				-0.9
1,439,092	+				+2.6
1,439,092	+				-0.2
1,439,093	-				+1.1
1,439,100	+		DDA3937_RS06445	0.11	-1.4
1,439,100	+		DDA3937_RS06445	0.11	+0.4
1,439,115	+		DDA3937_RS06445	0.15	-0.7
1,439,115	+		DDA3937_RS06445	0.15	+1.8
1,439,115	+		DDA3937_RS06445	0.15	-0.8
1,439,115	+		DDA3937_RS06445	0.15	-0.1
1,439,115	+		DDA3937_RS06445	0.15	-0.3
1,439,115	+		DDA3937_RS06445	0.15	-0.7
1,439,116	-		DDA3937_RS06445	0.15	-1.4
1,439,147	+		DDA3937_RS06445	0.24	+0.1
1,439,147	+		DDA3937_RS06445	0.24	+2.4
1,439,147	+		DDA3937_RS06445	0.24	-0.4
1,439,147	+		DDA3937_RS06445	0.24	-0.6
1,439,147	+		DDA3937_RS06445	0.24	+0.8
1,439,148	-		DDA3937_RS06445	0.24	+0.5
1,439,148	-		DDA3937_RS06445	0.24	+0.1
1,439,148	-		DDA3937_RS06445	0.24	-0.3
1,439,148	-		DDA3937_RS06445	0.24	-1.7
1,439,148	-		DDA3937_RS06445	0.24	+0.1
1,439,148	-		DDA3937_RS06445	0.24	+0.2
1,439,148	-		DDA3937_RS06445	0.24	-1.0
1,439,148	-		DDA3937_RS06445	0.24	+0.9
1,439,156	+		DDA3937_RS06445	0.27	-1.3
1,439,156	+		DDA3937_RS06445	0.27	+0.1
1,439,156	+		DDA3937_RS06445	0.27	-2.3
1,439,156	+		DDA3937_RS06445	0.27	+1.8
1,439,156	+		DDA3937_RS06445	0.27	+1.3
1,439,157	-		DDA3937_RS06445	0.27	-1.3
1,439,157	-		DDA3937_RS06445	0.27	+0.2
1,439,157	-		DDA3937_RS06445	0.27	+0.8
1,439,157	-		DDA3937_RS06445	0.27	-0.4
1,439,157	-		DDA3937_RS06445	0.27	-0.4
1,439,157	-		DDA3937_RS06445	0.27	+0.6
1,439,158	+		DDA3937_RS06445	0.27	+0.2
1,439,158	+		DDA3937_RS06445	0.27	+0.6
1,439,195	+		DDA3937_RS06445	0.38	+0.2
1,439,195	+		DDA3937_RS06445	0.38	+0.4
1,439,195	+		DDA3937_RS06445	0.38	+1.2
1,439,195	+		DDA3937_RS06445	0.38	-0.5
1,439,195	+		DDA3937_RS06445	0.38	+1.1
1,439,195	+		DDA3937_RS06445	0.38	+0.0
1,439,195	+		DDA3937_RS06445	0.38	-0.7
1,439,196	-		DDA3937_RS06445	0.38	-0.0
1,439,196	-		DDA3937_RS06445	0.38	-0.5
1,439,196	-		DDA3937_RS06445	0.38	-0.9
1,439,309	+		DDA3937_RS06445	0.71	-1.6
1,439,309	+		DDA3937_RS06445	0.71	+0.3
1,439,309	+		DDA3937_RS06445	0.71	+0.9
1,439,310	-		DDA3937_RS06445	0.71	-0.0
1,439,310	-		DDA3937_RS06445	0.71	-1.7
1,439,310	-		DDA3937_RS06445	0.71	-0.2
1,439,310	-		DDA3937_RS06445	0.71	+2.6
1,439,340	+		DDA3937_RS06445	0.80	-0.4
1,439,372	+		DDA3937_RS06445	0.89	+0.3
1,439,372	+		DDA3937_RS06445	0.89	-0.8
1,439,372	+		DDA3937_RS06445	0.89	+5.2
1,439,372	+				+1.0
1,439,373	-		DDA3937_RS06445	0.89	-0.7
1,439,373	-		DDA3937_RS06445	0.89	+1.6
1,439,373	-		DDA3937_RS06445	0.89	+0.7
1,439,373	-		DDA3937_RS06445	0.89	+0.9
1,439,381	+				-1.2
1,439,381	+				-0.5
1,439,381	+				+0.8
1,439,381	+				+0.0
1,439,382	-				+1.6
1,439,382	-				+0.4
1,439,382	-				+2.3
1,439,382	-				-0.7
1,439,382	-				+0.2
1,439,382	-				-0.0
1,439,466	+				-0.8
1,439,617	+		DDA3937_RS06450	0.12	+0.3
1,439,617	+		DDA3937_RS06450	0.12	+1.3
1,439,617	+		DDA3937_RS06450	0.12	-0.4
1,439,617	+		DDA3937_RS06450	0.12	-0.0
1,439,617	+		DDA3937_RS06450	0.12	+1.2
1,439,617	+		DDA3937_RS06450	0.12	-1.7
1,439,617	+		DDA3937_RS06450	0.12	+0.3
1,439,617	+		DDA3937_RS06450	0.12	-0.1
1,439,617	+		DDA3937_RS06450	0.12	-1.2
1,439,617	+		DDA3937_RS06450	0.12	-0.4
1,439,617	+		DDA3937_RS06450	0.12	-0.5
1,439,617	+		DDA3937_RS06450	0.12	+0.2
1,439,617	+		DDA3937_RS06450	0.12	-0.9
1,439,617	+		DDA3937_RS06450	0.12	+0.3
1,439,617	+		DDA3937_RS06450	0.12	+1.0
1,439,618	-		DDA3937_RS06450	0.12	-0.5
1,439,618	-		DDA3937_RS06450	0.12	+0.9
1,439,618	-		DDA3937_RS06450	0.12	-0.1
1,439,618	-		DDA3937_RS06450	0.12	+0.0
1,439,618	-		DDA3937_RS06450	0.12	-1.2
1,439,618	-		DDA3937_RS06450	0.12	-0.5
1,439,618	-		DDA3937_RS06450	0.12	-1.3
1,439,618	-		DDA3937_RS06450	0.12	-0.8
1,439,618	-		DDA3937_RS06450	0.12	-0.0
1,439,618	-		DDA3937_RS06450	0.12	-0.1
1,439,618	-		DDA3937_RS06450	0.12	+0.5
1,439,618	-		DDA3937_RS06450	0.12	+2.8
1,439,618	-		DDA3937_RS06450	0.12	+1.2
1,439,618	-		DDA3937_RS06450	0.12	-0.0
1,439,641	+		DDA3937_RS06450	0.13	+0.3
1,439,642	-		DDA3937_RS06450	0.13	-1.8
1,439,642	-		DDA3937_RS06450	0.13	+2.6
1,439,643	+		DDA3937_RS06450	0.13	-0.2
1,439,668	+		DDA3937_RS06450	0.15	+0.7
1,439,668	+		DDA3937_RS06450	0.15	+0.9
1,439,668	+		DDA3937_RS06450	0.15	-1.1
1,439,668	+		DDA3937_RS06450	0.15	-0.1
1,439,668	+		DDA3937_RS06450	0.15	+1.6
1,439,668	+		DDA3937_RS06450	0.15	+0.4
1,439,668	+		DDA3937_RS06450	0.15	+0.7
1,439,669	-		DDA3937_RS06450	0.15	+0.9
1,439,669	-		DDA3937_RS06450	0.15	-0.0
1,439,669	-		DDA3937_RS06450	0.15	-0.4
1,439,669	-		DDA3937_RS06450	0.15	+0.1
1,439,669	-		DDA3937_RS06450	0.15	+0.0
1,439,669	-		DDA3937_RS06450	0.15	+0.4
1,439,670	+		DDA3937_RS06450	0.15	+1.0
1,439,670	+		DDA3937_RS06450	0.15	+1.4
1,439,670	+		DDA3937_RS06450	0.15	+0.5
1,439,670	+		DDA3937_RS06450	0.15	-0.7
1,439,670	+		DDA3937_RS06450	0.15	+1.0
1,439,670	+		DDA3937_RS06450	0.15	+0.8
1,439,670	+		DDA3937_RS06450	0.15	-0.3
1,439,670	+		DDA3937_RS06450	0.15	+0.3
1,439,670	+		DDA3937_RS06450	0.15	+0.3
1,439,671	-		DDA3937_RS06450	0.15	+0.3
1,439,671	-		DDA3937_RS06450	0.15	+0.0
1,439,671	-		DDA3937_RS06450	0.15	-0.7
1,439,671	-		DDA3937_RS06450	0.15	-1.2
1,439,671	-		DDA3937_RS06450	0.15	-0.4
1,439,671	-		DDA3937_RS06450	0.15	-0.5
1,439,671	-		DDA3937_RS06450	0.15	+0.4
1,439,752	+		DDA3937_RS06450	0.19	+0.4
1,439,753	-		DDA3937_RS06450	0.19	-0.6
1,439,857	+		DDA3937_RS06450	0.25	+0.1
1,439,857	+		DDA3937_RS06450	0.25	+0.2
1,439,880	+		DDA3937_RS06450	0.27	+0.2
1,439,902	+		DDA3937_RS06450	0.28	-0.5
1,439,902	+		DDA3937_RS06450	0.28	-1.3
1,439,903	-		DDA3937_RS06450	0.28	-1.2
1,439,950	-		DDA3937_RS06450	0.31	+0.1
1,440,030	+		DDA3937_RS06450	0.35	+0.4
1,440,030	+		DDA3937_RS06450	0.35	+1.2
1,440,030	+		DDA3937_RS06450	0.35	-0.3
1,440,030	+		DDA3937_RS06450	0.35	+0.9
1,440,030	+		DDA3937_RS06450	0.35	-1.4
1,440,030	+		DDA3937_RS06450	0.35	+3.0
1,440,031	-		DDA3937_RS06450	0.35	-0.0
1,440,031	-		DDA3937_RS06450	0.35	+0.5
1,440,031	-		DDA3937_RS06450	0.35	-0.1
1,440,031	-		DDA3937_RS06450	0.35	+4.3
1,440,034	+				+1.4
1,440,034	+		DDA3937_RS06450	0.35	-0.7
1,440,034	+		DDA3937_RS06450	0.35	+0.4
1,440,034	+		DDA3937_RS06450	0.35	+0.5
1,440,034	+		DDA3937_RS06450	0.35	+0.5
1,440,034	+		DDA3937_RS06450	0.35	-1.0
1,440,035	-		DDA3937_RS06450	0.35	-0.8
1,440,035	-		DDA3937_RS06450	0.35	-0.2
1,440,035	-		DDA3937_RS06450	0.35	+1.3
1,440,235	+		DDA3937_RS06450	0.47	+0.7
1,440,273	-		DDA3937_RS06450	0.49	-0.4
1,440,342	+		DDA3937_RS06450	0.53	+5.7
1,440,428	+		DDA3937_RS06450	0.58	+1.8
1,440,428	+		DDA3937_RS06450	0.58	+2.7
1,440,428	+		DDA3937_RS06450	0.58	+1.7
1,440,428	+		DDA3937_RS06450	0.58	-0.1
1,440,428	+		DDA3937_RS06450	0.58	-1.6
1,440,429	-		DDA3937_RS06450	0.58	+0.4
1,440,429	-		DDA3937_RS06450	0.58	+1.2
1,440,429	-		DDA3937_RS06450	0.58	+0.4
1,440,472	+		DDA3937_RS06450	0.60	-1.6
1,440,472	+		DDA3937_RS06450	0.60	-0.0
1,440,472	+		DDA3937_RS06450	0.60	+0.4
1,440,472	+		DDA3937_RS06450	0.60	+0.2
1,440,473	-		DDA3937_RS06450	0.60	+1.0
1,440,473	-		DDA3937_RS06450	0.60	+0.9
1,440,473	-		DDA3937_RS06450	0.60	-1.4
1,440,473	-		DDA3937_RS06450	0.60	-0.5
1,440,473	-		DDA3937_RS06450	0.60	+1.1
1,440,486	+		DDA3937_RS06450	0.61	+0.6
1,440,590	+		DDA3937_RS06450	0.67	+0.4
1,440,591	-		DDA3937_RS06450	0.67	-0.5
1,440,657	+		DDA3937_RS06450	0.71	+0.2
1,440,666	-		DDA3937_RS06450	0.71	-0.1
1,440,666	-		DDA3937_RS06450	0.71	-0.0
1,440,756	+		DDA3937_RS06450	0.76	-0.7
1,440,807	+		DDA3937_RS06450	0.79	-0.2
1,440,807	+		DDA3937_RS06450	0.79	-0.0
1,440,808	-		DDA3937_RS06450	0.79	-0.3
1,440,808	-		DDA3937_RS06450	0.79	-0.9
1,440,816	+		DDA3937_RS06450	0.80	-1.8
1,440,817	-		DDA3937_RS06450	0.80	-2.9
1,440,817	-		DDA3937_RS06450	0.80	-1.1
1,440,912	+		DDA3937_RS06450	0.85	+0.6
1,440,912	+		DDA3937_RS06450	0.85	-1.5
1,440,913	-		DDA3937_RS06450	0.85	+0.5
1,440,913	-		DDA3937_RS06450	0.85	-1.2
1,440,913	-				+0.8
1,441,042	+				+0.1
1,441,084	+				-0.7
1,441,084	+				-0.6
1,441,085	-				-0.2
1,441,085	-				+0.3
1,441,135	-				+0.3
1,441,167	+				+1.2
1,441,167	+				+0.5
1,441,167	+				-0.0
1,441,167	+				-1.2
1,441,168	-				+0.8
1,441,168	-				+1.1
1,441,168	-				-0.6
1,441,168	-				-0.7
1,441,168	-				+0.5
1,441,171	+				-1.2
1,441,171	+				+1.4
1,441,172	-				-0.4
1,441,172	-				-0.7
1,441,172	-				+5.1
1,441,172	-				+0.5
1,441,172	-				+0.2
1,441,174	+				-0.1
1,441,174	+				+0.3
1,441,174	+				-0.1
1,441,175	-				-1.1
1,441,216	+				-0.9
1,441,216	+				-0.1
1,441,217	-				-1.2
1,441,217	-				-1.4
1,441,217	-				+0.2
1,441,217	-				+1.5
1,441,217	-				+0.5
1,441,223	-				-1.4
1,441,223	-				-0.5
1,441,261	+				+0.9
1,441,262	-				-1.6
1,441,262	-				-0.4
1,441,262	-				-0.6
1,441,262	-				+2.0
1,441,263	+				+3.8
1,441,263	+				-0.8
1,441,263	+				-0.6
1,441,264	-				-0.6
1,441,264	-				+0.7
1,441,264	-				-1.5
1,441,422	+		DDA3937_RS06455	0.32	+3.9
1,441,422	+		DDA3937_RS06455	0.32	+0.8
1,441,423	-		DDA3937_RS06455	0.32	+2.5
1,441,525	+		DDA3937_RS06455	0.46	-0.2
1,441,552	+		DDA3937_RS06455	0.50	-0.6
1,441,701	+		DDA3937_RS06455	0.71	+1.8
1,441,764	+		DDA3937_RS06455	0.79	-2.6
1,441,802	+		DDA3937_RS06455	0.85	-0.5
1,441,903	-				-1.2
1,441,927	-				+0.1
1,442,102	+				-0.3
1,442,102	+				+0.0
1,442,102	+				-1.0
1,442,102	+				-1.9
1,442,102	+				-0.1
1,442,135	+				-2.1
1,442,135	+				-1.2
1,442,135	+				+0.2
1,442,135	+				+0.7
1,442,138	+				+0.1
1,442,138	+				-1.3