Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06155

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,379,416	-		DDA3937_RS06145	0.41	-0.9
1,379,511	-		DDA3937_RS06145	0.54	-0.2
1,379,548	-		DDA3937_RS06145	0.59	-0.9
1,379,548	-		DDA3937_RS06145	0.59	-0.7
1,379,548	-		DDA3937_RS06145	0.59	+0.1
1,379,548	-		DDA3937_RS06145	0.59	-0.3
1,379,780	+				-1.1
1,379,783	+				-1.9
1,379,783	+				+1.4
1,379,783	+				+0.4
1,379,783	+				-2.6
1,379,798	+				+0.4
1,379,798	+				+0.4
1,379,799	-				-1.4
1,379,799	-				-0.6
1,379,799	-				-1.9
1,379,810	-				+0.6
1,379,819	+				-0.9
1,379,819	+				-0.9
1,379,819	+				+0.7
1,379,819	+				-1.9
1,379,819	+				-0.1
1,379,820	-				-1.0
1,379,820	-				-0.1
1,379,820	-				+0.7
1,379,820	-				-0.4
1,379,827	+				-1.6
1,379,827	+				-1.2
1,379,877	+				-1.6
1,379,877	+				-0.1
1,379,878	-				-0.1
1,379,878	-				-1.0
1,379,880	-				-1.6
1,379,893	+				-0.3
1,379,893	+				+0.4
1,379,894	-				+1.0
1,379,894	-				-0.7
1,379,894	-				-2.1
1,379,930	-				+0.4
1,380,245	-				+1.4
1,380,245	-				-0.2
1,380,282	-				+1.4
1,380,282	-				+0.8
1,380,282	-				+0.8
1,380,282	-				+0.3
1,380,282	-				-0.3
1,380,282	-				-0.6
1,380,282	-				-1.8
1,380,286	-				-0.2
1,380,286	-				-0.5
1,380,286	-				-0.3
1,380,314	-				-0.9
1,380,314	-				+0.8
1,380,334	-				+2.4
1,380,385	+				-0.4
1,380,386	-				+0.7
1,380,386	-				+0.8
1,380,390	+				+0.3
1,380,391	-				-2.0
1,380,391	-				-0.4
1,380,391	-				-0.2
1,380,438	-				-1.1
1,380,546	+		DDA3937_RS06155	0.16	+0.4
1,380,546	+		DDA3937_RS06155	0.16	-1.0
1,380,546	+		DDA3937_RS06155	0.16	-1.8
1,380,546	+		DDA3937_RS06155	0.16	+0.1
1,380,546	+		DDA3937_RS06155	0.16	-0.1
1,380,546	+		DDA3937_RS06155	0.16	-1.6
1,380,546	+		DDA3937_RS06155	0.16	-0.9
1,380,546	+		DDA3937_RS06155	0.16	-1.9
1,380,546	+		DDA3937_RS06155	0.16	+0.1
1,380,546	+		DDA3937_RS06155	0.16	-0.9
1,380,547	-		DDA3937_RS06155	0.16	-2.0
1,380,547	-		DDA3937_RS06155	0.16	+1.8
1,380,547	-		DDA3937_RS06155	0.16	-1.0
1,380,547	-		DDA3937_RS06155	0.16	-1.8
1,380,547	-		DDA3937_RS06155	0.16	-1.0
1,380,591	+		DDA3937_RS06155	0.19	-0.4
1,380,591	+		DDA3937_RS06155	0.19	-2.0
1,380,591	+		DDA3937_RS06155	0.19	-0.4
1,380,591	+		DDA3937_RS06155	0.19	-0.1
1,380,591	+		DDA3937_RS06155	0.19	-1.2
1,380,591	+		DDA3937_RS06155	0.19	-0.9
1,380,591	+		DDA3937_RS06155	0.19	-0.4
1,380,591	+		DDA3937_RS06155	0.19	-0.5
1,380,592	-		DDA3937_RS06155	0.19	+0.7
1,380,592	-		DDA3937_RS06155	0.19	-0.2
1,380,592	-		DDA3937_RS06155	0.19	-2.8
1,380,601	+		DDA3937_RS06155	0.20	+0.4
1,380,684	-				+0.4
1,380,765	-		DDA3937_RS06155	0.34	-1.6
1,380,815	-		DDA3937_RS06155	0.38	-1.3
1,380,815	-		DDA3937_RS06155	0.38	-3.2
1,380,905	-		DDA3937_RS06155	0.45	-2.0
1,380,933	+				-0.2
1,380,933	+		DDA3937_RS06155	0.48	-1.6
1,380,934	-		DDA3937_RS06155	0.48	+0.2
1,380,942	+		DDA3937_RS06155	0.48	-0.8
1,380,943	-		DDA3937_RS06155	0.48	-1.8
1,380,953	+		DDA3937_RS06155	0.49	-0.3
1,381,055	+				-0.2
1,381,069	+		DDA3937_RS06155	0.59	+0.6
1,381,069	+		DDA3937_RS06155	0.59	+1.4
1,381,074	+		DDA3937_RS06155	0.59	-0.6
1,381,115	+		DDA3937_RS06155	0.63	-1.0
1,381,115	+		DDA3937_RS06155	0.63	-0.4
1,381,115	+		DDA3937_RS06155	0.63	-0.9
1,381,115	+		DDA3937_RS06155	0.63	-0.8
1,381,116	-		DDA3937_RS06155	0.63	+0.1
1,381,116	-		DDA3937_RS06155	0.63	-0.6
1,381,116	-		DDA3937_RS06155	0.63	-0.6
1,381,116	-		DDA3937_RS06155	0.63	-0.9
1,381,119	+		DDA3937_RS06155	0.63	+0.2
1,381,119	+		DDA3937_RS06155	0.63	+0.4
1,381,120	-		DDA3937_RS06155	0.63	-1.2
1,381,120	-				-0.6
1,381,120	-		DDA3937_RS06155	0.63	-0.4
1,381,120	-		DDA3937_RS06155	0.63	-1.6
1,381,147	+		DDA3937_RS06155	0.65	-2.2
1,381,163	-		DDA3937_RS06155	0.67	-1.3
1,381,172	-		DDA3937_RS06155	0.67	-0.2
1,381,182	+		DDA3937_RS06155	0.68	+0.4
1,381,306	+		DDA3937_RS06155	0.78	+0.7
1,381,307	-		DDA3937_RS06155	0.78	+0.2
1,381,326	+		DDA3937_RS06155	0.80	+0.1
1,381,326	+		DDA3937_RS06155	0.80	-1.6
1,381,326	+		DDA3937_RS06155	0.80	-1.3
1,381,326	+		DDA3937_RS06155	0.80	+0.1
1,381,327	-		DDA3937_RS06155	0.80	-2.1
1,381,327	-		DDA3937_RS06155	0.80	+2.2
1,381,327	-		DDA3937_RS06155	0.80	-0.8
1,381,391	+		DDA3937_RS06155	0.85	-0.6
1,381,392	-		DDA3937_RS06155	0.85	-2.1
1,381,396	+		DDA3937_RS06155	0.86	-0.8
1,381,407	+		DDA3937_RS06155	0.87	+0.4
1,381,407	+		DDA3937_RS06155	0.87	-0.9
1,381,408	-		DDA3937_RS06155	0.87	-1.2
1,381,408	-		DDA3937_RS06155	0.87	-1.1
1,381,422	+		DDA3937_RS06155	0.88	-1.2
1,381,423	-		DDA3937_RS06155	0.88	-2.1
1,381,423	-		DDA3937_RS06155	0.88	-1.6
1,381,472	-				-1.0
1,381,472	-				-0.0
1,381,485	+				-1.0
1,381,531	+				-2.0
1,381,531	+				+0.2
1,381,531	+				-0.4
1,381,532	-				-0.8
1,381,532	-				-0.8
1,381,540	+				-1.8
1,381,541	-				-1.8
1,381,593	-				-0.7
1,381,593	-				+1.0
1,381,593	-				+0.4
1,381,594	+				-1.2
1,381,594	+				-2.2
1,381,594	+				-1.5
1,381,594	+				-1.7
1,381,594	+				-1.0
1,381,595	-				+0.5
1,381,595	-				-2.0
1,381,595	-				-2.3
1,381,616	+				-1.7
1,381,616	+				-0.8
1,381,616	+				-1.8
1,381,616	+				-2.2
1,381,617	-				-0.3
1,381,617	-				-0.2
1,381,617	-				-1.2
1,381,617	-				+2.0
1,381,617	-				-0.0
1,381,618	+				-0.3
1,381,619	-				-1.1
1,381,619	-				-0.8
1,381,619	-				-1.3
1,381,650	+				+5.1
1,381,650	+				+0.2
1,381,650	+				-0.5
1,381,650	+				+0.8
1,381,650	+				+0.4
1,381,650	+				-0.1
1,381,651	-				-1.0
1,381,699	-				+0.3
1,381,705	-				-1.6
1,381,742	+				-0.6
1,381,743	-				+0.5
1,381,743	-				+0.8
1,381,772	+				+1.0
1,381,863	+		DDA3937_RS06160	0.10	-0.3
1,381,864	-		DDA3937_RS06160	0.10	-1.4
1,381,871	+		DDA3937_RS06160	0.11	+2.8
1,381,893	+		DDA3937_RS06160	0.13	-1.4
1,381,894	-		DDA3937_RS06160	0.13	+0.7
1,382,432	+		DDA3937_RS06160	0.59	-1.3
1,382,432	+		DDA3937_RS06160	0.59	+0.1
1,382,432	+		DDA3937_RS06160	0.59	+0.4
1,382,432	+		DDA3937_RS06160	0.59	-0.2
1,382,432	+		DDA3937_RS06160	0.59	-0.4
1,382,432	+		DDA3937_RS06160	0.59	-1.2
1,382,433	-		DDA3937_RS06160	0.59	+0.4
1,382,433	-		DDA3937_RS06160	0.59	-1.2
1,382,433	-		DDA3937_RS06160	0.59	+0.2
1,382,495	+		DDA3937_RS06160	0.64	+1.0
1,382,495	+		DDA3937_RS06160	0.64	-1.6
1,382,495	+		DDA3937_RS06160	0.64	+2.8
1,382,495	+		DDA3937_RS06160	0.64	-0.5
1,382,495	+		DDA3937_RS06160	0.64	-1.1
1,382,495	+		DDA3937_RS06160	0.64	+2.1
1,382,495	+		DDA3937_RS06160	0.64	-1.3
1,382,495	+		DDA3937_RS06160	0.64	-0.6
1,382,496	-		DDA3937_RS06160	0.64	-0.8
1,382,496	-		DDA3937_RS06160	0.64	+0.3
1,382,496	-		DDA3937_RS06160	0.64	-0.1
1,382,497	+		DDA3937_RS06160	0.65	-0.8
1,382,497	+		DDA3937_RS06160	0.65	-0.6
1,382,497	+		DDA3937_RS06160	0.65	-0.4
1,382,497	+		DDA3937_RS06160	0.65	-0.8
1,382,498	-		DDA3937_RS06160	0.65	-1.4
1,382,563	+		DDA3937_RS06160	0.70	+0.1
1,382,563	+		DDA3937_RS06160	0.70	+1.4
1,382,563	+		DDA3937_RS06160	0.70	-1.6
1,382,563	+		DDA3937_RS06160	0.70	-0.0
1,382,564	-		DDA3937_RS06160	0.70	-0.1
1,382,564	-		DDA3937_RS06160	0.70	+0.1
1,382,564	-		DDA3937_RS06160	0.70	-1.9
1,382,564	-		DDA3937_RS06160	0.70	-0.6
1,382,564	-		DDA3937_RS06160	0.70	+0.1