Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS05405 and DDA3937_RS05410 are separated by 170 nucleotides DDA3937_RS05410 and DDA3937_RS05415 are separated by 35 nucleotides
DDA3937_RS05405: DDA3937_RS05405 - recombination-associated protein RdgC, at 1,205,066 to 1,205,977
_RS05405
DDA3937_RS05410: DDA3937_RS05410 - fructokinase, at 1,206,148 to 1,207,059
_RS05410
DDA3937_RS05415: DDA3937_RS05415 - hypothetical protein, at 1,207,095 to 1,210,778
_RS05415
Position (kb) 1206
1207
1208 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1205.512 kb on + strand, within DDA3937_RS05405 at 1205.513 kb on - strand, within DDA3937_RS05405 at 1205.608 kb on + strand, within DDA3937_RS05405 at 1205.950 kb on - strand at 1206.022 kb on - strand at 1206.022 kb on - strand at 1206.035 kb on + strand at 1206.035 kb on + strand at 1206.035 kb on + strand at 1206.035 kb on + strand at 1206.035 kb on + strand at 1206.036 kb on - strand at 1206.036 kb on - strand at 1206.133 kb on + strand at 1206.155 kb on + strand at 1206.155 kb on + strand at 1206.155 kb on + strand at 1206.155 kb on + strand at 1206.156 kb on - strand at 1206.156 kb on - strand at 1206.156 kb on - strand at 1206.156 kb on - strand at 1206.156 kb on - strand at 1206.160 kb on - strand at 1206.160 kb on - strand at 1206.168 kb on - strand at 1206.292 kb on - strand, within DDA3937_RS05410 at 1206.434 kb on + strand, within DDA3937_RS05410 at 1206.434 kb on + strand, within DDA3937_RS05410 at 1206.677 kb on - strand, within DDA3937_RS05410 at 1206.677 kb on - strand, within DDA3937_RS05410 at 1206.677 kb on - strand, within DDA3937_RS05410 at 1206.736 kb on + strand, within DDA3937_RS05410 at 1206.829 kb on + strand, within DDA3937_RS05410 at 1206.830 kb on - strand, within DDA3937_RS05410 at 1206.830 kb on - strand, within DDA3937_RS05410 at 1206.928 kb on + strand, within DDA3937_RS05410 at 1206.928 kb on + strand, within DDA3937_RS05410 at 1206.928 kb on + strand, within DDA3937_RS05410 at 1206.929 kb on - strand, within DDA3937_RS05410 at 1206.929 kb on - strand, within DDA3937_RS05410 at 1206.929 kb on - strand, within DDA3937_RS05410 at 1206.981 kb on + strand at 1207.096 kb on + strand at 1207.172 kb on + strand at 1207.173 kb on - strand at 1207.478 kb on - strand, within DDA3937_RS05415 at 1207.478 kb on - strand, within DDA3937_RS05415 at 1207.497 kb on + strand, within DDA3937_RS05415 at 1207.497 kb on + strand, within DDA3937_RS05415 at 1207.497 kb on + strand, within DDA3937_RS05415 at 1207.497 kb on + strand, within DDA3937_RS05415 at 1207.498 kb on - strand, within DDA3937_RS05415 at 1207.498 kb on - strand, within DDA3937_RS05415 at 1207.498 kb on - strand, within DDA3937_RS05415 at 1207.597 kb on + strand, within DDA3937_RS05415 at 1207.598 kb on - strand, within DDA3937_RS05415
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,205,512 + DDA3937_RS05405 0.49 +0.7 1,205,513 - DDA3937_RS05405 0.49 -0.4 1,205,608 + DDA3937_RS05405 0.59 -0.9 1,205,950 - -1.7 1,206,022 - -0.9 1,206,022 - -0.5 1,206,035 + -0.5 1,206,035 + -0.2 1,206,035 + -2.3 1,206,035 + -0.1 1,206,035 + -2.0 1,206,036 - -2.5 1,206,036 - -0.6 1,206,133 + +0.2 1,206,155 + +1.1 1,206,155 + -0.4 1,206,155 + +2.4 1,206,155 + +0.1 1,206,156 - -0.2 1,206,156 - -1.5 1,206,156 - +3.9 1,206,156 - +1.7 1,206,156 - -0.7 1,206,160 - -0.2 1,206,160 - -0.2 1,206,168 - +0.7 1,206,292 - DDA3937_RS05410 0.16 -1.0 1,206,434 + DDA3937_RS05410 0.31 +0.3 1,206,434 + DDA3937_RS05410 0.31 -1.9 1,206,677 - DDA3937_RS05410 0.58 +4.9 1,206,677 - DDA3937_RS05410 0.58 +0.5 1,206,677 - DDA3937_RS05410 0.58 +0.6 1,206,736 + DDA3937_RS05410 0.64 -0.4 1,206,829 + DDA3937_RS05410 0.75 +0.2 1,206,830 - DDA3937_RS05410 0.75 +1.5 1,206,830 - DDA3937_RS05410 0.75 -0.6 1,206,928 + DDA3937_RS05410 0.86 +0.7 1,206,928 + DDA3937_RS05410 0.86 +1.2 1,206,928 + DDA3937_RS05410 0.86 -0.7 1,206,929 - DDA3937_RS05410 0.86 -1.4 1,206,929 - DDA3937_RS05410 0.86 -0.3 1,206,929 - DDA3937_RS05410 0.86 +0.5 1,206,981 + -0.4 1,207,096 + +0.2 1,207,172 + +0.0 1,207,173 - -0.5 1,207,478 - DDA3937_RS05415 0.10 -0.3 1,207,478 - DDA3937_RS05415 0.10 +0.2 1,207,497 + DDA3937_RS05415 0.11 -0.6 1,207,497 + DDA3937_RS05415 0.11 -0.4 1,207,497 + DDA3937_RS05415 0.11 -0.3 1,207,497 + DDA3937_RS05415 0.11 +0.7 1,207,498 - DDA3937_RS05415 0.11 +2.6 1,207,498 - DDA3937_RS05415 0.11 -0.6 1,207,498 - DDA3937_RS05415 0.11 -3.0 1,207,597 + DDA3937_RS05415 0.14 -1.2 1,207,598 - DDA3937_RS05415 0.14 -0.3
Or see this region's nucleotide sequence