Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04775

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,063,444	-		DDA3937_RS04770	0.12	-1.8
1,063,477	-		DDA3937_RS04770	0.15	+0.3
1,063,517	-		DDA3937_RS04770	0.19	-0.3
1,063,530	+		DDA3937_RS04770	0.21	+0.2
1,063,642	+		DDA3937_RS04770	0.32	-0.7
1,063,642	+		DDA3937_RS04770	0.32	-0.1
1,063,702	+		DDA3937_RS04770	0.38	-0.2
1,063,702	+		DDA3937_RS04770	0.38	+0.4
1,063,702	+		DDA3937_RS04770	0.38	+1.1
1,063,702	+		DDA3937_RS04770	0.38	-0.1
1,063,702	+		DDA3937_RS04770	0.38	+1.1
1,063,703	-		DDA3937_RS04770	0.38	-0.1
1,063,703	-		DDA3937_RS04770	0.38	+1.3
1,063,703	-		DDA3937_RS04770	0.38	-0.3
1,063,762	+		DDA3937_RS04770	0.44	+0.7
1,063,762	+		DDA3937_RS04770	0.44	-1.1
1,063,762	+		DDA3937_RS04770	0.44	+5.2
1,063,792	+		DDA3937_RS04770	0.47	-0.2
1,063,889	-		DDA3937_RS04770	0.57	-1.4
1,063,919	+		DDA3937_RS04770	0.60	-0.0
1,063,919	+		DDA3937_RS04770	0.60	-0.0
1,063,920	-		DDA3937_RS04770	0.60	-0.1
1,063,920	-		DDA3937_RS04770	0.60	-0.4
1,063,930	+		DDA3937_RS04770	0.61	-0.0
1,064,040	+		DDA3937_RS04770	0.72	-0.5
1,064,041	-		DDA3937_RS04770	0.72	-1.0
1,064,131	+		DDA3937_RS04770	0.81	-0.3
1,064,132	-		DDA3937_RS04770	0.82	-0.7
1,064,132	-		DDA3937_RS04770	0.82	-0.7
1,064,153	+		DDA3937_RS04770	0.84	-0.5
1,064,154	-		DDA3937_RS04770	0.84	+0.0
1,064,154	-		DDA3937_RS04770	0.84	-1.9
1,064,154	-		DDA3937_RS04770	0.84	-0.2
1,064,154	-		DDA3937_RS04770	0.84	-0.2
1,064,179	+		DDA3937_RS04770	0.86	-1.3
1,064,179	+		DDA3937_RS04770	0.86	-0.3
1,064,179	+		DDA3937_RS04770	0.86	+0.0
1,064,179	+		DDA3937_RS04770	0.86	+0.2
1,064,179	+		DDA3937_RS04770	0.86	-0.4
1,064,180	-		DDA3937_RS04770	0.86	-1.1
1,064,180	-		DDA3937_RS04770	0.86	-0.1
1,064,180	-		DDA3937_RS04770	0.86	-0.0
1,064,180	-		DDA3937_RS04770	0.86	-0.2
1,064,180	-		DDA3937_RS04770	0.86	-2.1
1,064,180	-		DDA3937_RS04770	0.86	+0.3
1,064,189	+		DDA3937_RS04770	0.87	-0.3
1,064,189	+				+5.1
1,064,190	-		DDA3937_RS04770	0.87	-0.0
1,064,190	-		DDA3937_RS04770	0.87	-0.9
1,064,250	+				-0.3
1,064,272	+				+0.7
1,064,272	+				-1.4
1,064,293	+				+0.2
1,064,294	-				-1.9
1,064,294	-				-0.4
1,064,363	+				-1.0
1,064,363	+				-0.7
1,064,363	+				-0.7
1,064,363	+				+0.2
1,064,363	+				+0.4
1,064,363	+				-1.2
1,064,364	-				+0.7
1,064,364	-				-0.7
1,064,364	-				-0.5
1,064,364	-				+1.3
1,064,369	+				-1.1
1,064,370	-				-2.1
1,064,370	-				+0.1
1,064,411	-				+0.4
1,064,524	+		DDA3937_RS04775	0.16	-0.1
1,064,565	+		DDA3937_RS04775	0.20	+0.9
1,064,565	+		DDA3937_RS04775	0.20	-2.3
1,064,566	-		DDA3937_RS04775	0.20	-0.3
1,064,566	-		DDA3937_RS04775	0.20	-0.1
1,064,566	-		DDA3937_RS04775	0.20	-2.1
1,064,566	-		DDA3937_RS04775	0.20	+0.4
1,064,566	-		DDA3937_RS04775	0.20	+0.7
1,064,635	+		DDA3937_RS04775	0.27	-2.1
1,064,666	+		DDA3937_RS04775	0.31	-0.9
1,064,666	+		DDA3937_RS04775	0.31	-2.4
1,064,666	+		DDA3937_RS04775	0.31	-1.7
1,064,666	+		DDA3937_RS04775	0.31	-0.2
1,064,667	-		DDA3937_RS04775	0.31	+0.0
1,064,667	-		DDA3937_RS04775	0.31	-1.0
1,064,668	+		DDA3937_RS04775	0.31	-0.7
1,064,668	+		DDA3937_RS04775	0.31	-0.7
1,064,669	-		DDA3937_RS04775	0.31	-0.9
1,064,669	-		DDA3937_RS04775	0.31	+0.2
1,064,678	+		DDA3937_RS04775	0.32	+0.6
1,064,682	+		DDA3937_RS04775	0.32	+0.1
1,064,682	+		DDA3937_RS04775	0.32	-1.1
1,064,683	-		DDA3937_RS04775	0.32	-1.2
1,064,698	-		DDA3937_RS04775	0.34	-0.8
1,064,698	-		DDA3937_RS04775	0.34	-0.6
1,064,742	+		DDA3937_RS04775	0.38	-1.0
1,064,742	+		DDA3937_RS04775	0.38	-0.6
1,064,743	-		DDA3937_RS04775	0.38	+0.0
1,064,743	-		DDA3937_RS04775	0.38	-1.2
1,064,744	+		DDA3937_RS04775	0.39	-1.6
1,064,744	+		DDA3937_RS04775	0.39	-1.4
1,064,744	+		DDA3937_RS04775	0.39	-0.1
1,064,744	+		DDA3937_RS04775	0.39	-0.8
1,064,744	+		DDA3937_RS04775	0.39	+0.4
1,064,744	+		DDA3937_RS04775	0.39	-0.7
1,064,744	+		DDA3937_RS04775	0.39	-0.2
1,064,744	+		DDA3937_RS04775	0.39	-0.7
1,064,744	+		DDA3937_RS04775	0.39	-0.1
1,064,744	+		DDA3937_RS04775	0.39	-0.4
1,064,744	+		DDA3937_RS04775	0.39	+1.0
1,064,744	+		DDA3937_RS04775	0.39	+0.6
1,064,745	-		DDA3937_RS04775	0.39	-0.6
1,064,745	-		DDA3937_RS04775	0.39	-0.7
1,064,745	-		DDA3937_RS04775	0.39	-1.9
1,064,745	-		DDA3937_RS04775	0.39	-1.2
1,064,745	-		DDA3937_RS04775	0.39	-1.2
1,064,785	+		DDA3937_RS04775	0.43	-0.5
1,064,802	+		DDA3937_RS04775	0.44	-0.7
1,064,802	+		DDA3937_RS04775	0.44	-0.2
1,064,803	-		DDA3937_RS04775	0.44	-0.2
1,064,807	+		DDA3937_RS04775	0.45	+0.5
1,064,807	+		DDA3937_RS04775	0.45	+0.1
1,064,807	+		DDA3937_RS04775	0.45	+0.4
1,064,807	+		DDA3937_RS04775	0.45	-1.1
1,064,808	-		DDA3937_RS04775	0.45	+0.4
1,064,808	-		DDA3937_RS04775	0.45	+1.8
1,064,808	-		DDA3937_RS04775	0.45	-1.0
1,064,808	-		DDA3937_RS04775	0.45	-0.4
1,064,808	-		DDA3937_RS04775	0.45	+0.3
1,064,928	+		DDA3937_RS04775	0.57	-0.1
1,064,928	+		DDA3937_RS04775	0.57	-0.1
1,064,929	-		DDA3937_RS04775	0.57	-0.0
1,064,929	-		DDA3937_RS04775	0.57	-0.6
1,064,929	-				+1.4
1,064,929	-		DDA3937_RS04775	0.57	-1.1
1,064,929	-		DDA3937_RS04775	0.57	-0.8
1,064,929	-		DDA3937_RS04775	0.57	+0.3
1,064,929	-		DDA3937_RS04775	0.57	+0.4
1,064,929	-		DDA3937_RS04775	0.57	-0.1
1,064,929	-		DDA3937_RS04775	0.57	-0.3
1,064,931	+		DDA3937_RS04775	0.57	+0.6
1,064,931	+		DDA3937_RS04775	0.57	+0.4
1,065,015	+		DDA3937_RS04775	0.66	-0.7
1,065,016	-		DDA3937_RS04775	0.66	-3.0
1,065,016	-		DDA3937_RS04775	0.66	+1.1
1,065,017	+		DDA3937_RS04775	0.66	+0.9
1,065,018	-		DDA3937_RS04775	0.66	-0.7
1,065,018	-		DDA3937_RS04775	0.66	-1.4
1,065,018	-		DDA3937_RS04775	0.66	-0.3
1,065,018	-		DDA3937_RS04775	0.66	+0.3
1,065,132	+		DDA3937_RS04775	0.78	-0.3
1,065,213	+		DDA3937_RS04775	0.86	-0.9
1,065,213	+		DDA3937_RS04775	0.86	+0.4
1,065,214	-		DDA3937_RS04775	0.86	+1.1
1,065,220	-		DDA3937_RS04775	0.87	-0.0
1,065,220	-		DDA3937_RS04775	0.87	-1.1
1,065,220	-		DDA3937_RS04775	0.87	+3.8
1,065,240	+		DDA3937_RS04775	0.89	+0.6
1,065,244	-		DDA3937_RS04775	0.89	-0.5
1,065,244	-		DDA3937_RS04775	0.89	+1.1
1,065,244	-		DDA3937_RS04775	0.89	-0.7
1,065,258	+				-0.7
1,065,258	+				-0.6
1,065,306	+				-1.1
1,065,306	+				-2.3
1,065,306	+				-1.4
1,065,306	+				-2.1
1,065,306	+				+0.1
1,065,306	+				-1.1
1,065,307	-				+4.4
1,065,307	-				+0.1
1,065,307	-				+1.4
1,065,310	-				+0.6
1,065,310	-				+1.3
1,065,310	-				-0.3
1,065,337	+				-1.1
1,065,338	-				-1.3
1,065,338	-				-0.0
1,065,341	+				+1.4
1,065,341	+				+0.9
1,065,341	+				-1.0
1,065,342	-				+0.6
1,065,396	+				-1.6
1,065,396	+				-1.0
1,065,403	+				-0.6
1,065,403	+				-1.0
1,065,404	-				-0.8
1,065,404	-				-3.6
1,065,412	+				-1.5
1,065,421	+				-0.0
1,065,421	+				-0.8
1,065,421	+				-0.6
1,065,421	+				+0.4
1,065,422	-				+0.1
1,065,422	-				-0.1
1,065,422	-				-1.5
1,065,423	+				+1.3
1,065,423	+				-0.1
1,065,424	-				-0.6
1,065,482	+				-0.4
1,065,482	+				-0.4
1,065,482	+				-0.0
1,065,482	+				-0.3
1,065,483	-				-0.6
1,065,483	-				-1.7
1,065,487	+				-1.3
1,065,487	+				-0.1
1,065,502	-				+0.4
1,065,536	+				-1.2
1,065,536	+				-0.2
1,065,547	+				-1.4
1,065,547	+				-1.4
1,065,547	+				-0.1
1,065,548	-				-0.9
1,065,548	-				-0.6
1,065,548	-				-0.8
1,065,548	-				+1.1
1,065,551	+				+0.1
1,065,551	+				-0.2
1,065,551	+				-2.0
1,065,551	+				-2.6
1,065,551	+				-0.1
1,065,552	-				+3.8
1,065,581	+				-0.8
1,065,582	-				-1.4
1,065,615	+		DDA3937_RS04780	0.13	-2.4
1,065,616	-		DDA3937_RS04780	0.14	-0.9
1,065,618	+		DDA3937_RS04780	0.14	-0.3
1,065,619	-		DDA3937_RS04780	0.14	-1.5
1,065,752	-		DDA3937_RS04780	0.42	+0.4
1,065,752	-		DDA3937_RS04780	0.42	+1.3
1,065,791	+		DDA3937_RS04780	0.50	+2.2
1,065,792	-		DDA3937_RS04780	0.51	-0.6
1,065,845	+		DDA3937_RS04780	0.62	-0.8
1,065,845	+		DDA3937_RS04780	0.62	-1.1
1,065,845	+		DDA3937_RS04780	0.62	+0.4
1,065,846	-		DDA3937_RS04780	0.62	-1.1
1,065,846	-		DDA3937_RS04780	0.62	-1.7
1,065,846	-		DDA3937_RS04780	0.62	+1.2
1,065,891	+		DDA3937_RS04780	0.72	+1.6
1,065,892	-		DDA3937_RS04780	0.72	+0.2
1,065,892	-		DDA3937_RS04780	0.72	+0.8
1,065,915	+		DDA3937_RS04780	0.77	-0.1
1,065,916	-		DDA3937_RS04780	0.77	+0.6
1,065,917	+		DDA3937_RS04780	0.77	+0.4
1,065,918	-		DDA3937_RS04780	0.77	-0.6
1,065,948	+		DDA3937_RS04780	0.84	+0.4
1,065,948	+		DDA3937_RS04780	0.84	-0.3
1,065,948	+		DDA3937_RS04780	0.84	+2.7
1,065,948	+		DDA3937_RS04780	0.84	+1.4
1,065,948	+		DDA3937_RS04780	0.84	-0.7
1,065,948	+		DDA3937_RS04780	0.84	-0.1
1,065,948	+		DDA3937_RS04780	0.84	-0.4
1,065,949	-		DDA3937_RS04780	0.84	-0.4
1,065,949	-		DDA3937_RS04780	0.84	-1.0
1,065,949	-		DDA3937_RS04780	0.84	-0.8
1,065,949	-		DDA3937_RS04780	0.84	-0.6
1,065,949	-		DDA3937_RS04780	0.84	+0.3
1,065,949	-		DDA3937_RS04780	0.84	+0.9
1,066,050	-				-0.1
1,066,069	+				+0.1
1,066,070	-				+0.1
1,066,077	+				-0.1
1,066,078	-				-0.1
1,066,078	-				-0.0
1,066,078	-				-1.0
1,066,078	-				-0.1
1,066,096	-				-0.6
1,066,169	+				-0.1
1,066,330	+		DDA3937_RS04785	0.16	-1.0