Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04765

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,060,259	+		DDA3937_RS04760	0.31	-0.2
1,060,260	-		DDA3937_RS04760	0.32	-1.1
1,060,260	-		DDA3937_RS04760	0.32	-0.2
1,060,260	-		DDA3937_RS04760	0.32	+0.4
1,060,283	-		DDA3937_RS04760	0.33	-0.9
1,060,325	+		DDA3937_RS04760	0.36	-0.0
1,060,325	+		DDA3937_RS04760	0.36	+0.4
1,060,325	+		DDA3937_RS04760	0.36	-0.7
1,060,325	+		DDA3937_RS04760	0.36	+0.6
1,060,326	-		DDA3937_RS04760	0.36	-1.6
1,060,327	+		DDA3937_RS04760	0.36	+0.9
1,060,327	+		DDA3937_RS04760	0.36	+0.9
1,060,328	-		DDA3937_RS04760	0.36	-1.1
1,060,328	-		DDA3937_RS04760	0.36	+0.2
1,060,598	+		DDA3937_RS04760	0.56	-0.6
1,060,598	+		DDA3937_RS04760	0.56	-0.5
1,060,598	+		DDA3937_RS04760	0.56	-0.2
1,060,598	+		DDA3937_RS04760	0.56	-0.3
1,060,599	-		DDA3937_RS04760	0.56	+0.2
1,060,599	-		DDA3937_RS04760	0.56	-0.4
1,060,748	+		DDA3937_RS04760	0.67	+1.0
1,060,748	+		DDA3937_RS04760	0.67	-0.1
1,060,748	+		DDA3937_RS04760	0.67	-0.4
1,060,748	+		DDA3937_RS04760	0.67	-2.1
1,060,749	-		DDA3937_RS04760	0.67	+0.4
1,060,749	-		DDA3937_RS04760	0.67	+0.3
1,060,749	-		DDA3937_RS04760	0.67	-2.0
1,060,749	-		DDA3937_RS04760	0.67	+0.5
1,060,763	+		DDA3937_RS04760	0.68	+0.2
1,060,763	+		DDA3937_RS04760	0.68	-0.2
1,060,763	+		DDA3937_RS04760	0.68	-2.7
1,060,764	-		DDA3937_RS04760	0.68	+0.3
1,060,764	-		DDA3937_RS04760	0.68	-1.3
1,060,771	+		DDA3937_RS04760	0.69	+0.4
1,060,808	+		DDA3937_RS04760	0.72	+0.2
1,060,808	+				-1.1
1,060,808	+		DDA3937_RS04760	0.72	+0.2
1,060,808	+		DDA3937_RS04760	0.72	-0.8
1,060,809	-		DDA3937_RS04760	0.72	+0.6
1,060,809	-		DDA3937_RS04760	0.72	+0.2
1,060,809	-		DDA3937_RS04760	0.72	+1.4
1,060,816	+		DDA3937_RS04760	0.72	+0.6
1,060,816	+		DDA3937_RS04760	0.72	+0.6
1,060,817	-		DDA3937_RS04760	0.72	+1.4
1,060,983	-		DDA3937_RS04760	0.84	-0.9
1,061,009	+		DDA3937_RS04760	0.86	-0.7
1,061,009	+		DDA3937_RS04760	0.86	-1.0
1,061,009	+		DDA3937_RS04760	0.86	+0.8
1,061,010	-		DDA3937_RS04760	0.86	-0.4
1,061,010	-		DDA3937_RS04760	0.86	-2.3
1,061,010	-		DDA3937_RS04760	0.86	-1.9
1,061,010	-		DDA3937_RS04760	0.86	+0.4
1,061,010	-		DDA3937_RS04760	0.86	+0.6
1,061,011	+		DDA3937_RS04760	0.87	-1.0
1,061,011	+		DDA3937_RS04760	0.87	-0.4
1,061,012	-		DDA3937_RS04760	0.87	-0.0
1,061,012	-		DDA3937_RS04760	0.87	-1.4
1,061,045	+		DDA3937_RS04760	0.89	-0.6
1,061,045	+				-0.1
1,061,045	+		DDA3937_RS04760	0.89	-0.3
1,061,045	+		DDA3937_RS04760	0.89	-1.7
1,061,045	+		DDA3937_RS04760	0.89	-2.1
1,061,045	+		DDA3937_RS04760	0.89	-0.4
1,061,046	-		DDA3937_RS04760	0.89	-0.4
1,061,046	-		DDA3937_RS04760	0.89	-0.3
1,061,047	+		DDA3937_RS04760	0.89	+0.8
1,061,047	+		DDA3937_RS04760	0.89	-0.4
1,061,047	+		DDA3937_RS04760	0.89	+0.4
1,061,047	+		DDA3937_RS04760	0.89	-1.2
1,061,047	+		DDA3937_RS04760	0.89	-1.1
1,061,047	+		DDA3937_RS04760	0.89	-0.5
1,061,048	-		DDA3937_RS04760	0.89	+0.2
1,061,048	-		DDA3937_RS04760	0.89	-2.1
1,061,048	-		DDA3937_RS04760	0.89	-0.4
1,061,117	+				-1.6
1,061,229	-				-0.5
1,061,290	+				+0.6
1,061,290	+				+0.0
1,061,291	-				-1.2
1,061,479	+		DDA3937_RS04765	0.14	-0.1
1,061,480	-		DDA3937_RS04765	0.14	-0.1
1,061,480	-		DDA3937_RS04765	0.14	-0.1
1,061,634	-		DDA3937_RS04765	0.21	-1.7
1,061,634	-		DDA3937_RS04765	0.21	+0.1
1,061,653	+		DDA3937_RS04765	0.22	-0.8
1,061,654	-		DDA3937_RS04765	0.22	-1.0
1,061,654	-		DDA3937_RS04765	0.22	-1.0
1,061,654	-		DDA3937_RS04765	0.22	-0.8
1,061,680	+		DDA3937_RS04765	0.23	-0.6
1,061,680	+		DDA3937_RS04765	0.23	-0.4
1,061,680	+		DDA3937_RS04765	0.23	-2.1
1,061,681	-		DDA3937_RS04765	0.23	-0.5
1,061,681	-		DDA3937_RS04765	0.23	-1.9
1,061,681	-		DDA3937_RS04765	0.23	-1.9
1,061,704	+		DDA3937_RS04765	0.24	-0.1
1,061,711	+		DDA3937_RS04765	0.25	+0.4
1,061,851	+		DDA3937_RS04765	0.31	+1.4
1,061,851	+		DDA3937_RS04765	0.31	+0.1
1,061,851	+		DDA3937_RS04765	0.31	+1.7
1,061,852	-		DDA3937_RS04765	0.31	-1.3
1,061,853	+		DDA3937_RS04765	0.32	+0.6
1,061,853	+		DDA3937_RS04765	0.32	-1.5
1,061,854	-		DDA3937_RS04765	0.32	-1.7
1,061,952	+		DDA3937_RS04765	0.36	-0.8
1,062,048	+		DDA3937_RS04765	0.41	-1.0
1,062,048	+		DDA3937_RS04765	0.41	-0.0
1,062,077	-		DDA3937_RS04765	0.42	-0.8
1,062,083	+		DDA3937_RS04765	0.43	-1.6
1,062,092	+		DDA3937_RS04765	0.43	-1.5
1,062,139	+		DDA3937_RS04765	0.45	+0.5
1,062,139	+		DDA3937_RS04765	0.45	+0.1
1,062,139	+		DDA3937_RS04765	0.45	+0.9
1,062,140	-		DDA3937_RS04765	0.45	+0.8
1,062,140	-		DDA3937_RS04765	0.45	-1.9
1,062,244	+				+0.1
1,062,244	+		DDA3937_RS04765	0.50	+0.4
1,062,325	+		DDA3937_RS04765	0.54	-0.4
1,062,325	+		DDA3937_RS04765	0.54	+0.6
1,062,326	-		DDA3937_RS04765	0.54	-1.3
1,062,326	-		DDA3937_RS04765	0.54	-0.2
1,062,326	-		DDA3937_RS04765	0.54	+0.4
1,062,334	+		DDA3937_RS04765	0.55	-2.1
1,062,334	+		DDA3937_RS04765	0.55	+0.8
1,062,334	+		DDA3937_RS04765	0.55	-2.0
1,062,335	-		DDA3937_RS04765	0.55	+0.2
1,062,340	+		DDA3937_RS04765	0.55	-0.5
1,062,340	+		DDA3937_RS04765	0.55	-0.5
1,062,340	+		DDA3937_RS04765	0.55	-0.7
1,062,340	+		DDA3937_RS04765	0.55	-0.3
1,062,341	-		DDA3937_RS04765	0.55	-0.7
1,062,341	-				+1.4
1,062,341	-		DDA3937_RS04765	0.55	-0.5
1,062,341	-		DDA3937_RS04765	0.55	-0.0
1,062,375	+		DDA3937_RS04765	0.57	-0.5
1,062,375	+		DDA3937_RS04765	0.57	-2.1
1,062,375	+		DDA3937_RS04765	0.57	+0.7
1,062,375	+		DDA3937_RS04765	0.57	-1.4
1,062,375	+		DDA3937_RS04765	0.57	-0.6
1,062,376	-		DDA3937_RS04765	0.57	+0.9
1,062,376	-		DDA3937_RS04765	0.57	-1.1
1,062,376	-		DDA3937_RS04765	0.57	+2.8
1,062,376	-		DDA3937_RS04765	0.57	-0.2
1,062,376	-		DDA3937_RS04765	0.57	-2.1
1,062,501	+		DDA3937_RS04765	0.63	+0.0
1,062,502	-		DDA3937_RS04765	0.63	-0.4
1,062,502	-		DDA3937_RS04765	0.63	-2.1
1,062,827	+		DDA3937_RS04765	0.78	+0.8
1,062,836	+		DDA3937_RS04765	0.79	-2.7
1,062,836	+		DDA3937_RS04765	0.79	-1.9
1,062,836	+		DDA3937_RS04765	0.79	+0.2
1,062,836	+		DDA3937_RS04765	0.79	+0.7
1,062,836	+		DDA3937_RS04765	0.79	+0.4
1,062,837	-		DDA3937_RS04765	0.79	-0.0
1,062,837	-		DDA3937_RS04765	0.79	-0.8
1,062,913	+		DDA3937_RS04765	0.82	+0.8
1,062,913	+		DDA3937_RS04765	0.82	+3.8
1,062,914	-		DDA3937_RS04765	0.82	-1.6
1,062,914	-		DDA3937_RS04765	0.82	-2.2
1,062,966	+		DDA3937_RS04765	0.85	+0.9
1,062,966	+		DDA3937_RS04765	0.85	+0.2
1,062,976	-				+0.1
1,063,042	-		DDA3937_RS04765	0.89	-1.0
1,063,136	+				-2.1
1,063,149	+				+1.6
1,063,257	+				-0.4
1,063,287	-				-0.1
1,063,294	-				+0.5
1,063,294	-				-0.0
1,063,444	-		DDA3937_RS04770	0.12	-1.8
1,063,477	-		DDA3937_RS04770	0.15	+0.3
1,063,517	-		DDA3937_RS04770	0.19	-0.3
1,063,530	+		DDA3937_RS04770	0.21	+0.2
1,063,642	+		DDA3937_RS04770	0.32	-0.7
1,063,642	+		DDA3937_RS04770	0.32	-0.1
1,063,702	+		DDA3937_RS04770	0.38	-0.2
1,063,702	+		DDA3937_RS04770	0.38	+0.4
1,063,702	+		DDA3937_RS04770	0.38	+1.1
1,063,702	+		DDA3937_RS04770	0.38	-0.1
1,063,702	+		DDA3937_RS04770	0.38	+1.1
1,063,703	-		DDA3937_RS04770	0.38	-0.1
1,063,703	-		DDA3937_RS04770	0.38	+1.3
1,063,703	-		DDA3937_RS04770	0.38	-0.3
1,063,762	+		DDA3937_RS04770	0.44	+0.7
1,063,762	+		DDA3937_RS04770	0.44	-1.1
1,063,762	+		DDA3937_RS04770	0.44	+5.2
1,063,792	+		DDA3937_RS04770	0.47	-0.2
1,063,889	-		DDA3937_RS04770	0.57	-1.4
1,063,919	+		DDA3937_RS04770	0.60	-0.0
1,063,919	+		DDA3937_RS04770	0.60	-0.0
1,063,920	-		DDA3937_RS04770	0.60	-0.1
1,063,920	-		DDA3937_RS04770	0.60	-0.4
1,063,930	+		DDA3937_RS04770	0.61	-0.0
1,064,040	+		DDA3937_RS04770	0.72	-0.5
1,064,041	-		DDA3937_RS04770	0.72	-1.0
1,064,131	+		DDA3937_RS04770	0.81	-0.3
1,064,132	-		DDA3937_RS04770	0.82	-0.7
1,064,132	-		DDA3937_RS04770	0.82	-0.7
1,064,153	+		DDA3937_RS04770	0.84	-0.5
1,064,154	-		DDA3937_RS04770	0.84	+0.0
1,064,154	-		DDA3937_RS04770	0.84	-1.9
1,064,154	-		DDA3937_RS04770	0.84	-0.2
1,064,154	-		DDA3937_RS04770	0.84	-0.2
1,064,179	+		DDA3937_RS04770	0.86	-1.3
1,064,179	+		DDA3937_RS04770	0.86	-0.3
1,064,179	+		DDA3937_RS04770	0.86	+0.0
1,064,179	+		DDA3937_RS04770	0.86	+0.2
1,064,179	+		DDA3937_RS04770	0.86	-0.4
1,064,180	-		DDA3937_RS04770	0.86	-1.1
1,064,180	-		DDA3937_RS04770	0.86	-0.1
1,064,180	-		DDA3937_RS04770	0.86	-0.0
1,064,180	-		DDA3937_RS04770	0.86	-0.2
1,064,180	-		DDA3937_RS04770	0.86	-2.1
1,064,180	-		DDA3937_RS04770	0.86	+0.3
1,064,189	+		DDA3937_RS04770	0.87	-0.3
1,064,189	+				+5.1
1,064,190	-		DDA3937_RS04770	0.87	-0.0
1,064,190	-		DDA3937_RS04770	0.87	-0.9
1,064,250	+				-0.3
1,064,272	+				+0.7
1,064,272	+				-1.4